Cited by 153Gut microbiota and healthNutritional Studies and DietGastrointestinal motility and disorders

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Human gut microbiome composition and tryptophan metabolites were changed differently by fast food and Mediterranean diet in 4 days: a pilot study

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Zhu, Chenghao, Sawrey-Kubicek, Lisa, Beals, Elizabeth, Rhodes, Chris H., Houts, Hannah Eve, Sacchi, Romina, Zivkovic, Angela M.·2020·Nutrition Research

DOI 10.1016/j.nutres.2020.03.005

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Abstract

Diets rich in animal source foods vs plant-based diets have different macronutrient composition, and they have been shown to have differential effects on the gut microbiome. In this study, we hypothesized that diets with very different nutrient composition are able to change gut microbiome composition and metabolites in a very short period. We compared a fast food (FF) diet (ie, burgers and fries) with a Mediterranean (Med) diet, which is rich in vegetables, whole grains, olive oil, nuts, and fish. Ten healthy subjects participated in a controlled crossover study in which they consumed a Med diet and FF diet in randomized order for 4 days each, with a 4-day washout between treatments. Fecal DNA was extracted and the 16S V4 region amplified using polymerase chain reaction followed by sequencing on an Illumina MiSeq. Plasma metabolites and bile acids were analyzed using liquid chromatography-mass spectrometry. Certain bile-tolerant microbial genera and species including Collinsella, Parabacteroides, and Bilophila wadsworthia significantly increased after the FF diet. Some fiber-fermenting bacteria, including Lachnospiraceae and Butyricicoccus, increased significantly after the Med diet and decreased after the FF diet. Bacterially produced metabolites indole-3-lactic acid and indole-3-propionic acid, which have been shown to confer beneficial effects on neuronal cells, increased after the Med diet and decreased after the FF diet. Interindividual variability in response to the treatments may be related to differences in background diet, for example as shown by differences in Bilophila response in relationship to the saturated fat content of the baseline diet. In conclusion, an animal fat-rich, low-fiber FF diet v. a high-fiber Med diet altered human gut microbiome composition and its metabolites after just 4 days.

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limma powers differential expression analyses for RNA-sequencing and microarray studies
Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., & Smyth, G. K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv007 · Cited by 40,458
DADA2: High–resolution sample inference from Illumina amplicon data
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016) · Nature Methods · doi:10.1038/nmeth.3869 · Cited by 35,698
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
McMurdie, P. J., & Holmes, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061217 · Cited by 21,942
Diet rapidly and reproducibly alters the human gut microbiome
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823
A metagenome-wide association study of gut microbiota in type 2 diabetes
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., et al. (2011) · Nature · doi:10.1038/nature09922 · Cited by 5,597
Primary Prevention of Cardiovascular Disease with a Mediterranean Diet Supplemented with Extra-Virgin Olive Oil or Nuts
Estruch, R., Ros, E., Salas-Salvadó, J., Covas, M.-I., Corella, D., Arós, F., Gómez-Gracia, E., Ruiz-Gutiérrez, V., Fiol, M., Lapetra, J., et al. (2018) · New England Journal of Medicine · doi:10.1056/nejmoa1800389 · Cited by 3,616
Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk
Tang, W. H. W., Wang, Z., Levison, B. S., Koeth, R. A., Britt, E. B., Fu, X., Wu, Y., & Hazen, S. L. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1109400 · Cited by 3,400
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
Callahan, B. J., McMurdie, P. J., & Holmes, S. (2017) · The ISME Journal · doi:10.1038/ismej.2017.119 · Cited by 3,253
The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
Turnbaugh, P. J., Ridaura, V. K., Faith, J. J., Rey, F. E., Knight, R., & Gordon, J. I. (2009) · Science Translational Medicine · doi:10.1126/scitranslmed.3000322 · Cited by 3,058
Mediterranean Diet, Traditional Risk Factors, and the Rate of Cardiovascular Complications After Myocardial Infarction: Final Report of the Lyon Diet Heart Study
de Lorgeril, M., Salen, P., Martin, J.-L., Monjaud, I., Delaye, J., & Mamelle, N. (1999) · Circulation · doi:10.1161/01.cir.99.6.779 · Cited by 2,910
Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics
Matyash, V., Liebisch, G., Kurzchalia, T. V., Shevchenko, A., & Schwudke, D. (2008) · Journal of Lipid Research · doi:10.1194/jlr.d700041-jlr200 · Cited by 2,633
Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22
Zelante, T., Iannitti, R. G., Cunha, C., De Luca, A., Giovannini, G., Pieraccini, G., Zecchi, R., D’Angelo, C., Massi-Benedetti, C., Fallarino, F., et al. (2013) · Immunity · doi:10.1016/j.immuni.2013.08.003 · Cited by 2,614
Mediterranean diet pyramid: a cultural model for healthy eating
Willett, W., Sacks, F., Trichopoulou, A., Drescher, G., Ferro-Luzzi, A., Helsing, E., & Trichopoulos, D. (1995) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/61.6.1402s · Cited by 2,461
Effect of a Mediterranean-Style Diet on Endothelial Dysfunction and Markers of Vascular Inflammation in the Metabolic Syndrome: A Randomized Trial
Esposito, K., Marfella, R., Ciotola, M., Di Palo, C., Giugliano, F., Giugliano, G., D'Armiento, M., D'Andrea, F., & Giugliano, D. (2004) · JAMA · doi:10.1001/jama.292.12.1440 · Cited by 2,126
Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice
Devkota, S., Wang, Y., Musch, M. W., Leone, V., Fehlner-Peach, H., Nadimpalli, A., Antonopoulos, D. A., Jabri, B., & Chang, E. B. (2012) · Nature · doi:10.1038/nature11225 · Cited by 1,904
High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome
De Filippis, F., Pellegrini, N., Vannini, L., Jeffery, I. B., La Storia, A., Laghi, L., Serrazanetti, D. I., Di Cagno, R., Ferrocino, I., Lazzi, C., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-309957 · Cited by 1,638
CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands
Lamas, B., Richard, M. L., Leducq, V., Pham, H.-P., Michel, M.-L., Da Costa, G., Bridonneau, C., Jegou, S., Hoffmann, T. W., Natividad, J. M., et al. (2016) · Nature Medicine · doi:10.1038/nm.4102 · Cited by 1,482
Symptomatic atherosclerosis is associated with an altered gut metagenome
Karlsson, F. H., Fåk, F., Nookaew, I., Tremaroli, V., Fagerberg, B., Petranovic, D., Bäckhed, F., & Nielsen, J. (2012) · Nature Communications · doi:10.1038/ncomms2266 · Cited by 1,371
Impact of the Gut Microbiota on Intestinal Immunity Mediated by Tryptophan Metabolism
Gao, J., Xu, K., Liu, H., Liu, G., Bai, M., Peng, C., Li, T., & Yin, Y. (2018) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2018.00013 · Cited by 1,357
Comparison of Sequencing Utility Programs
Aronesty, E. (2013) · The Open Bioinformatics Journal · doi:10.2174/1875036201307010001 · Cited by 1,144
Symbiotic bacterial metabolites regulate gastrointestinal barrier function via the xenobiotic sensor PXR and Toll-like receptor 4
Venkatesh, M., Mukherjee, S., Wang, H., Li, H., Sun, K., Benechet, A. P., Qiu, Z., Maher, L., Redinbo, M. R., Phillips, R. S., et al. (2014) · Immunity · doi:10.1016/j.immuni.2014.06.014 · Cited by 1,066
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
Duncan, S. H., Belenguer, A., Holtrop, G., Johnstone, A. M., Flint, H. J., & Lobley, G. E. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02340-06 · Cited by 941
Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
Wlodarska, M., Luo, C., Kolde, R., d'Hennezel, E. B., Annand, J. W., Heim, C. E., Krastel, P., Schmitt, E. K., Omar, A. S., Creasey, E. A., et al. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.06.007 · Cited by 918
Reduction in the Incidence of Type 2 Diabetes With the Mediterranean Diet
Salas-Salvadó, J., Bulló, M., Babio, N., Martínez-González, M. Á., Ibarrola-Jurado, N., Basora, J., Estruch, R., Covas, M. I., Corella, D., Arós, F., et al. (2011) · Diabetes Care · doi:10.2337/dc10-1288 · Cited by 901
Association between dietary patterns and plasma biomarkers of obesity and cardiovascular disease risk
Fung, T. T., Rimm, E. B., Spiegelman, D. L., Rifai, N., Tofler, G. H., Willett, W. C., & Hu, F. B. (2001) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/73.1.61 · Cited by 862
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data sciencePreprint
Bolyen, E. K., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al‐Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2018) · doi:10.7287/peerj.preprints.27295v1 · Cited by 838
Cross-Over Trials in Clinical Research
Senn, S. J. (1994) · Technometrics · doi:10.1080/00401706.1994.10485798 · Cited by 777
Mediterranean diet improves cognition: the PREDIMED-NAVARRA randomised trial
Martínez-Lapiscina, E. H., Clavero, P., Toledo, E., Estruch, R., Salas-Salvadó, J., San Julián, B., Sanchez-Tainta, A., Ros, E., Valls-Pedret, C., & Martinez-Gonzalez, M. Á. (2013) · Journal of Neurology, Neurosurgery & Psychiatry · doi:10.1136/jnnp-2012-304792 · Cited by 747
Adherence to the Mediterranean food pattern predicts the prevalence of hypertension, hypercholesterolemia, diabetes and obesity, among healthy adults; the accuracy of the MedDietScore
Panagiotakos, D. B., Pitsavos, C., Arvaniti, F., & Stefanadis, C. (2006) · Preventive Medicine · doi:10.1016/j.ypmed.2006.12.009 · Cited by 653
Dietary patterns and the risk of coronary heart disease in women.
Fung, T., Willett, W., Stampfer, M., Manson, J., & Hu, F. (2001) · Archives of Internal Medicine · doi:10.1001/archinte.161.15.1857 · Cited by 606
Scientific Evidence of Interventions Using the Mediterranean Diet: A Systematic Review
Serra‐Majem, L., Román, B., & Estruch, R. (2006) · Nutrition Reviews · doi:10.1111/j.1753-4887.2006.tb00232.x · Cited by 583
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data sciencePreprint
Bolyen, E. K., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al‐Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2018) · doi:10.7287/peerj.preprints.27295v2 · Cited by 555
Diet shapes the gut microbiome of pigs during nursing and weaning
Frese, S. A., Parker, K., Calvert, C. C., & Mills, D. A. (2015) · Microbiome · doi:10.1186/s40168-015-0091-8 · Cited by 545
Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions
Zhang, L., & Davies, S. S. (2016) · Genome Medicine · doi:10.1186/s13073-016-0296-x · Cited by 521
Impact of chronic dietary red meat, white meat, or non-meat protein on trimethylamine N-oxide metabolism and renal excretion in healthy men and women
Wang, Z., Bergeron, N., Levison, B. S., Li, X. S., Chiu, S., Jia, X., Koeth, R. A., Li, L., Wu, Y., Tang, W. H. W., et al. (2019) · European Heart Journal · doi:10.1093/eurheartj/ehy799 · Cited by 496
Dietary patterns are associated with biochemical markers of inflammation and endothelial activation in the Multi-Ethnic Study of Atherosclerosis (MESA)
Nettleton, J. A., Steffen, L. M., Mayer-Davis, E. J., Jenny, N. S., Jiang, R., Herrington, D. M., & Jacobs, D. R. (2006) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/83.6.1369 · Cited by 484
Dietary pattern, inflammation, and incidence of type 2 diabetes in women
Schulze, M. B., Hoffmann, K., Manson, J. E., Willett, W. C., Meigs, J. B., Weikert, C., Heidemann, C., Colditz, G. A., & Hu, F. B. (2005) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/82.3.675 · Cited by 457
Potent Neuroprotective Properties against the Alzheimer β-Amyloid by an Endogenous Melatonin-related Indole Structure, Indole-3-propionic Acid
Chyan, Y., Pöeggeler, B., Omar, R., Chain, D. G., Frangione, B., Ghiso, J. A., & Pappolla, M. A. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.31.21937 · Cited by 409
Kynurenines in CNS disease: regulation by inflammatory cytokines.
Campbell, B. M., Charych, E., Lee, A. W., & Möller, T. (2014) · Frontiers in Neuroscience · doi:10.3389/fnins.2014.00012 · Cited by 409
Trimethylamine‐ N ‐oxide (TMAO) response to animal source foods varies among healthy young men and is influenced by their gut microbiota composition: A randomized controlled trial
Cho, C. E., Taesuwan, S., Malysheva, O. V., Bender, E., Tulchinsky, N. F., Yan, J., Sutter, J. L., & Caudill, M. A. (2017) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201600324 · Cited by 405
Anti-inflammatory effects of the Mediterranean diet: the experience of the PREDIMED study
Estruch, R. (2010) · Proceedings of The Nutrition Society · doi:10.1017/s0029665110001539 · Cited by 359
l-Carnitine in omnivorous diets induces an atherogenic gut microbial pathway in humans
Koeth, R. A., Lam-Galvez, B. R., Kirsop, J., Wang, Z., Levison, B. S., Gu, X., Copeland, M. F., Bartlett, D., Cody, D. B., Dai, H. J., et al. (2018) · Journal of Clinical Investigation · doi:10.1172/jci94601 · Cited by 327
Heart Failure is Associated with Depletion of Core Intestinal Microbiota
Luedde, M., Winkler, T., Heinsen, F., Rühlemann, M. C., Spehlmann, M. E., Bajrovic, A., Lieb, W., Franke, A., Ott, S. J., & Frey, N. (2017) · ESC Heart Failure · doi:10.1002/ehf2.12155 · Cited by 317
Substituting whole grains for refined grains in a 6-wk randomized trial has a modest effect on gut microbiota and immune and inflammatory markers of healthy adults
Vanegas, S. M., Meydani, M., Barnett, J. B., Goldin, B., Kane, A., Rasmussen, H., Brown, C., Vangay, P., Knights, D., Jonnalagadda, S., et al. (2017) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.116.146928 · Cited by 277
Dietary Inflammatory Index and Incidence of Cardiovascular Disease in the PREDIMED Study
García‐Arellano, A., Ramallal, R., Ruiz‐Canela, M., Salas‐Salvadó, J., Corella, D., Shivappa, N., Schröder, H., Hébert, J. R., Ros, E., Gómez‐Gracia, E., et al. (2015) · Nutrients · doi:10.3390/nu7064124 · Cited by 252
Gut Microbiota Signature in Heart Failure Defined From Profiling of 2 Independent Cohorts
Kummen, M., Mayerhofer, C. C. K., Vestad, B., Broch, K., Awoyemi, A., Storm-Larsen, C., Ueland, T., Yndestad, A., Hov, J. R., & Trøseid, M. (2018) · Journal of the American College of Cardiology · doi:10.1016/j.jacc.2017.12.057 · Cited by 227
Tryptophan Nutrition and Metabolism: An Overview
Peters, J. C. (1991) · Advances in experimental medicine and biology · doi:10.1007/978-1-4684-5952-4_32 · Cited by 212
Tryptophan metabolism, disposition and utilization in pregnancy
Badawy, A. A.-B. (2015) · Bioscience Reports · doi:10.1042/bsr20150197 · Cited by 208
Walnut consumption alters the gastrointestinal microbiota, microbially derived secondary bile acids, and health markers in healthy adults: a randomized controlled trial
Holscher, H. D., Guetterman, H. M., Swanson, K. S., An, R., Matthan, N. R., Lichtenstein, A. H., Novotny, J. A., & Baer, D. J. (2018) · The Journal of Nutrition · doi:10.1093/jn/nxy004 · Cited by 182
Consumption of Mediterranean versus Western Diet Leads to Distinct Mammary Gland Microbiome Populations
Shively, C. A., Register, T. C., Appt, S. E., Clarkson, T. B., Uberseder, B., Clear, K. Y. J., Wilson, A. S., Chiba, A., Tooze, J. A., & Cook, K. L. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.08.078 · Cited by 180
Mediterranean diet and faecal microbiota: a transversal study
Gutiérrez-Díaz, I., Fernández-Navarro, T., Sánchez, B., Margolles, A., & González, S. (2016) · Food & Function · doi:10.1039/c6fo00105j · Cited by 176
Increased Secondary/Primary Bile Acid Ratio in Chronic Heart Failure
Mayerhofer, C. C. K., Ueland, T., Broch, K., Vincent, R. P., Cross, G. F., Dahl, C. P., Aukrust, P., Gullestad, L. L., Hov, J. R., & Trøseid, M. (2017) · Journal of Cardiac Failure · doi:10.1016/j.cardfail.2017.06.007 · Cited by 169
Indoleamine 2,3-dioxygenase enzyme activity correlates with risk factors for atherosclerosis: the Cardiovascular Risk in Young Finns Study
Pertovaara, M., Raitala, A., Juonala, M., Lehtimäki, T. J., Huhtala, H., Oja, S. S., Jokinen, E. V., Viikari, J. S. A., Raitakari, O. T., & Hurme, M. (2007) · Clinical & Experimental Immunology · doi:10.1111/j.1365-2249.2007.03325.x · Cited by 148
Trimethylamine N-oxide, Mediterranean diet, and nutrition in healthy, normal-weight adults: also a matter of sex?
Barrea, L., Annunziata, G., Muscogiuri, G., Laudisio, D., Somma, C. D., Maisto, M., Tenore, G. C., Colao, A., & Savastano, S. (2018) · Nutrition · doi:10.1016/j.nut.2018.11.015 · Cited by 133
Protein type, protein dose, and age modulate dietary protein digestion and phenylalanine absorption kinetics and plasma phenylalanine availability in humans
Gorissen, S. H., Trommelen, J., Kouw, I. W., Kouw, I. W., Pennings, B., Pennings, B., Wall, B. T., Churchward-Venne, T. A., Horstman, A. M., Koopman, R., et al. (2020) · The Journal of Nutrition · doi:10.1093/jn/nxaa024 · Cited by 131
Effect of fasting on free and esterified carnitine levels in human serum and urine: Correlation with serum levels of free fatty acids and β-hydroxybutyrate
Frohlich, J. J., Seccombe, D. W., Hahn, P., Dodek, P., & Hynie, I. (1978) · Metabolism · doi:10.1016/0026-0495(78)90022-7 · Cited by 130
Association between diet-related inflammation, all-cause, all-cancer, and cardiovascular disease mortality, with special focus on prediabetics: findings from NHANES III
Deng, F. E., Shivappa, N., Tang, Y., Mann, J. R., & Hébert, J. R. (2016) · European Journal of Nutrition · doi:10.1007/s00394-016-1158-4 · Cited by 128
High‐fat Diet‐induced Intestinal Hyperpermeability is Associated with Increased Bile Acids in the Large Intestine of Mice
Murakami, Y., Tanabe, S., & Suzuki, T. (2015) · Journal of Food Science · doi:10.1111/1750-3841.13166 · Cited by 125
Carnitine metabolism in normal-weight and obese human subjects during fasting
Hoppel, C. L., & GENUTH, S. M. (1980) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.1980.238.5.e409 · Cited by 111
Unconjugated and secondary bile acid profiles in response to higher-fat, lower-carbohydrate diet and associated with related gut microbiota: A 6-month randomized controlled-feeding trial
Wan, Y., Yuan, J., Li, J., Li, H., Zhang, J., Tang, J., Ni, Y., Huang, T., Wang, F., Zhao, F., et al. (2019) · Clinical Nutrition · doi:10.1016/j.clnu.2019.02.037 · Cited by 109
Buccal administration of human colostrum: impact on the oral microbiota of premature infants
Sohn, K., Kalanetra, K. M., Mills, D. A., & Underwood, M. A. (2015) · Journal of Perinatology · doi:10.1038/jp.2015.157 · Cited by 103
Plant polyphenols alter a pathway of energy metabolism by inhibiting fecal Bacteroidetes and Firmicutes in vitro
Xue, B., Xie, J., Huang, J., Chen, L., Gao, L., Ou, S., Wang, Y., & Peng, X. (2016) · Food & Function · doi:10.1039/c5fo01438g · Cited by 100
Coarse, but not finely ground, dietary fibre increases intestinalFirmicutes:Bacteroidetesratio and reduces diarrhoea induced by experimental infection in piglets
Molist, F., Manzanilla, E. G., Pérez, J. F., & Nyachoti, C. M. (2011) · British Journal Of Nutrition · doi:10.1017/s0007114511005216 · Cited by 94
Mediterranean diet and nonalcoholic fatty liver disease: molecular mechanisms of protection
Godos, J., Federico, A., Dallio, M., & Scazzina, F. (2016) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2016.1214239 · Cited by 94
Pro-inflammatory dietary intake as a risk factor for CVD in men: a 5-year longitudinal study
O'Neil, A. E., Shivappa, N., Jacka, F. N., Kotowicz, M. A., Kibbey, K. J., Hébert, J. R., & Pasco, J. A. (2015) · British Journal Of Nutrition · doi:10.1017/s0007114515003815 · Cited by 80
Fast food consumption in Iranian adults; dietary intake and cardiovascular risk factors: Tehran Lipid and Glucose Study.
Bahadoran, Z., Mirmiran, P., Golzarand, M., Hosseini‐Esfahani, F., & Azizi, F. (2012) · PubMed · Cited by 53
A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium
Barupal, D. K., Zhang, Y., Shen, T., Fan, S., Roberts, B. S., Fitzgerald, P., Wancewicz, B., Valdiviez, L., Wohlgemuth, G., Byram, G., et al. (2019) · Metabolites · doi:10.3390/metabo9050101 · Cited by 53
How diet can impact gut microbiota to promote or endanger health
Chassaing, B., Vijay-Kumar, M., & Gewirtz, A. T. (2017) · Current Opinion in Gastroenterology · doi:10.1097/mog.0000000000000401 · Cited by 52
The HDL lipidome is widely remodeled by fast food versus Mediterranean diet in 4 days
Zhu, C., Sawrey-Kubicek, L., Beals, E., Hughes, R. L., Rhodes, C. H., Sacchi, R., & Zivkovic, A. M. (2019) · Metabolomics · doi:10.1007/s11306-019-1579-1 · Cited by 40
Urinary excretion of acetylcarnitine during human diabetic and fasting ketosis
Hoppel, C. L., & GENUTH, S. M. (1982) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.1982.243.2.e168 · Cited by 37
Site-Specific Glycoprofiles of HDL-Associated ApoE are Correlated with HDL Functional Capacity and Unaffected by Short-Term Diet
Zhu, C., Wong, M., Li, Q., Sawrey‐Kubicek, L., Beals, E., Rhodes, C. H., Sacchi, R., Lebrilla, C. B., & Zivkovic, A. M. (2019) · Journal of Proteome Research · doi:10.1021/acs.jproteome.9b00450 · Cited by 33
Metabolic perturbations of postnatal growth restriction and hyperoxia-induced pulmonary hypertension in a bronchopulmonary dysplasia model
Frano, M. R. L., Fahrmann, J. F., Grapov, D., Fiehn, O., Pedersen, T. L., Newman, J. W. I., Underwood, M. A., Steinhorn, R. H., & Wedgwood, S. (2017) · Metabolomics · doi:10.1007/s11306-017-1170-6 · Cited by 21
Gut fermentation induced by a resistant starch rich whole grain diet explains serum concentration of dihydroferulic acid and hippuric acid in a model of ZDF rats
Vitaglione, P., Mennella, I., Ferracane, R., Goldsmith, F., Guice, J. L., Page, R. C., Raggio, A. M., Coulon, D. B., Martin, R. J., & Keenan, M. J. (2019) · Journal of Functional Foods · doi:10.1016/j.jff.2018.12.041 · Cited by 11
Introduction
Senn, S. J. (2002) · doi:10.1002/0470854596.ch1 · Cited by 5

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1 of the 80 references couldn’t be matched to a known paper.

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Diet and the Microbiota–Gut–Brain Axis: Sowing the Seeds of Good Mental Health
Berding, K., Vlckova, K., Marx, W., Schellekens, H., Stanton, C., Clarke, G., Jacka, F., Dinan, T. G., & Cryan, J. F. (2021) · Advances in Nutrition · doi:10.1093/advances/nmaa181 · Cited by 451
Nutritional Components in Western Diet Versus Mediterranean Diet at the Gut Microbiota–Immune System Interplay. Implications for Health and Disease
Montero, C. G., Fraile‐Μartinez, O., Gomez-Lahoz, A. M., Pekarek, L., Castellanos, A. J., Noguerales-Fraguas, F., Coca, S., Guijarro, L. G., García‐Honduvilla, N., Asúnsolo, Á., et al. (2021) · Nutrients · doi:10.3390/nu13020699 · Cited by 487
Mediterranean Diet Effects on Type 2 Diabetes Prevention, Disease Progression, and Related Mechanisms. A Review
Martín-Peláez, S., Fito, M., & Castaner, O. (2020) · Nutrients · doi:10.3390/nu12082236 · Cited by 330
The kynurenine pathway in major depressive disorder, bipolar disorder, and schizophrenia: a meta-analysis of 101 studies
Marx, W., McGuinness, A. J., Rocks, T., Ruusunen, A. A., Cleminson, J. R., Walker, A. J., Gomes‐da‐Costa, S., Lane, M. M., Sanches, M., Díaz, A. P., et al. (2020) · Molecular Psychiatry · doi:10.1038/s41380-020-00951-9 · Cited by 339
Ultra-processed foods and human health: from epidemiological evidence to mechanistic insights
Srour, B., Kordahi, M. C., Bonazzi, E., Deschasaux-Tanguy, M., Touvier, M., & Chassaing, B. (2022) · The Lancet Gastroenterology & Hepatology · doi:10.1016/s2468-1253(22)00169-8 · Cited by 303

See all 153

Authors: Zhu, C., Sawrey-Kubicek, L., Beals, E., Rhodes, C. H., Houts, H. E., Sacchi, R., & Zivkovic, A. M.
Affiliations: University of California, Davis (US)
Corresponding author: Zivkovic, Angela M.
ORCID: Zhu, Chenghao
Beals, Elizabeth
Houts, Hannah Eve
Zivkovic, Angela M.
Venue: Nutrition Research
Publisher: Elsevier BV
Published: 2020-05
Volume: 77
Pages: 62-72
ISSN: 0271-5317 (ISSN-L)
DOI: 10.1016/j.nutres.2020.03.005
OpenAlex: W3013916601
Cited by: 153
References: 80
Citations by year: 2026: 10 · 2025: 25 · 2024: 32 · 2023: 32 · 2022: 28 · 2021: 20 · 2020: 5
FWCI: 6.89
Type: journal article
Language: en
Open access: hybrid
doi.org
Licence: cc-by-nc-nd
www.elsevier.com/tdm/userlicense/1.0/ (tdm)
www.elsevier.com/legal/tdmrep-license (tdm)
creativecommons.org/licenses/by-nc-nd/4.0/ (vor)
Locations: Nutrition Research (publishedVersion, cc-by-nc-nd)
PubMed (publishedVersion)
eScholarship (California Digital Library) (submittedVersion)
Funders: West Coast Metabolomics Center, University of California, Davis
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Nutritional Studies and Diet
Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
Keywords: gut microbiota, tryptophan metabolites, fast food diet, Mediterranean diet, short-term dietary intervention, bile acids, Collinsella, Parabacteroides, Bilophila wadsworthia, Lachnospiraceae, Butyricicoccus, indole-3-lactic acid, indole-3-propionic acid, saturated fat, interindividual variability
MeSH terms: Gastrointestinal Microbiome, Adolescent, Adult, Bacteria, Bile Acids and Salts, Biogenic Amines, Diet, Feces, Humans, Phylogeny, Pilot Projects, Tryptophan, Cross-Over Studies, Diet, Mediterranean, Young Adult, Fast Foods

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Human gut microbiome composition and tryptophan metabolites were changed differently by fast food and Mediterranean diet in 4 days: a pilot study

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