Capillary electrophoresis with Orbitrap-Velos mass spectrometry detection
Open accessAbstract
Capillary electrophoresis can provide fast and efficient separations of peptides. However, the high speed separation and limited loading capacity of capillary electrophoresis requires the use of a fast and sensitive detector. While laser-induced fluorescence provides exquisite sensitivity and millisecond response time, it inherently generates a low information content signal. In contrast, mass spectrometry provides an information rich signal that is attractive for peptide analysis. The recently introduced Velos-Orbitrap mass spectrometer is capable of fast and sensitive tandem MS acquisition and simultaneous high accuracy MS acquisition, which is well suited for coupling with fast and efficient separation methods for peptide analysis. We evaluated this instrument as a detector for peptide separation by capillary electrophoresis. In MS mode, we observed low attomole detection limits for a number of peptides in a tryptic digest of standard proteins with high mass resolution (30,000 at m/z 400). The response time of the Orbitrap at this resolution was ∼0.70s, which was adequate to reconstruct the peak shape and area of our electrophoretic peaks. The linear ion-trap successfully recorded tandem MS spectra of tryptic peptides at 20 nM concentration.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Effective removal of SDS was demonstrated in both neutral and positively charged coated capillaries for antibody separations.
“In this approach, effective removal of SDS was demonstrated in both neutral and positively charged coated capillaries.”
From Recent trends of capillary electrophoresis‐mass spectrometry in proteomics research (2019) · cites this paper as [111]
CE-MS characterized and quantitated individual molecular proteoforms of interferon-β.
“Bush et al. characterized and quantitated individual molecular proteoforms of interferon-β111.”
From Recent trends of capillary electrophoresis‐mass spectrometry in proteomics research (2019) · cites this paper as [111]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Global analysis of protein expression in yeast
Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., & Weissman, J. S. (2003) · Nature · doi:10.1038/nature02046 · Cited by 3,750 · see citing works
Semi-supervised learning for peptide identification from shotgun proteomics datasets
Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., & MacCoss, M. J. (2007) · Nature Methods · doi:10.1038/nmeth1113 · Cited by 2,424 · see citing works
Self-citationZone electrophoresis in open-tubular glass capillaries
Jorgenson, J. W., & Lukacs, K. D. A. (1981) · Analytical Chemistry · doi:10.1021/ac00231a037 · Cited by 1,942 · see citing works
Analytical Properties of the Nanoelectrospray Ion Source
Wilm, M. S., & Mann, M. (1996) · Analytical Chemistry · doi:10.1021/ac9509519 · Cited by 1,871 · see citing works
The Orbitrap: a new mass spectrometer
Hu, Q., Noll, R. J., Li, H., Makarov, A., Hardman, M., & Cooks, R. G. (2005) · Journal of Mass Spectrometry · doi:10.1002/jms.856 · Cited by 1,338 · see citing works
Capillary Zone Electrophoresis
Jorgenson, J. W., & Lukacs, K. D. (1983) · Science · doi:10.1126/science.6623076 · Cited by 1,289 · see citing works
A common open representation of mass spectrometry data and its application to proteomics research
Pedrioli, P. G. A., Eng, J. K., Hubley, R. M., Vogelzang, M., Deutsch, E. W., Raught, B., Pratt, B. S., Nilsson, E. J., Angeletti, R. H., Apweiler, R., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt1031 · Cited by 782 · see citing works
On-line mass spectrometric detection for capillary zone electrophoresis
Olivares, J. A., Nhung, N. T., Yonker, C. R., & Smith, R. D. (1987) · Analytical Chemistry · doi:10.1021/ac00135a034 · Cited by 635 · see citing works
Capillary zone electrophoresis of proteins in untreated fused silica tubing
Lauer, H. H., & McManigill, D. (1986) · Analytical Chemistry · doi:10.1021/ac00292a041 · Cited by 617 · see citing works
Improved electrospray ionization interface for capillary zone electrophoresis-mass spectrometry
Smith, R. D., Barinaga, C. J., & Udseth, H. R. (1988) · Analytical Chemistry · doi:10.1021/ac00169a022 · Cited by 534 · see citing works
Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency
Zhang, B., Chambers, M., & Tabb, D. L. (2007) · Journal of Proteome Research · doi:10.1021/pr070230d · Cited by 374 · see citing works
McDonald, W. H., Tabb, D. L., Sadygov, R. G., MacCoss, M. J., Venable, J. D., Graumann, J., Johnson, J. R., Cociorva, D., & Yates, J. R. (2004) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.1603 · Cited by 345 · see citing works
Self-citationMoini, M. (2007) · Analytical Chemistry · doi:10.1021/ac0704560 · Cited by 322 · see citing works
Current trends in quantitative proteomics
Elliott, M. H., SMITH, D. S. H., Parker, C. E., & Borchers, C. H. (2009) · Journal of Mass Spectrometry · doi:10.1002/jms.1692 · Cited by 274 · see citing works
Free-zone electrophoresis in glass capillaries.
Jorgenson, J. W., & Lukacs, K. D. (1981) · Clinical Chemistry · doi:10.1093/clinchem/27.9.1551 · Cited by 234 · see citing works
Wojcik, R., Dada, O. O., Sadilek, M., & Dovichi, N. J. (2010) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.4672 · Cited by 234 · see citing works
Self-citationBerkel, G. J. V., Zhou, F., & Aronson, J. T. (1997) · International Journal of Mass Spectrometry and Ion Processes · doi:10.1016/s0168-1176(96)04476-x · Cited by 201 · see citing works
Maxwell, E. J., & Chen, D. D. Y. (2008) · Analytica Chimica Acta · doi:10.1016/j.aca.2008.06.034 · Cited by 197 · see citing works
Approaching complete peroxisome characterization by gas-phase fractionation
Yi, E. C., Marelli, M., Lee, H., Purvine, S. O., Aebersold, R. H., Aitchison, J. D., & Goodlett, D. R. (2002) · Electrophoresis · doi:10.1002/1522-2683(200209)23:18 · Cited by 183 · see citing works
Liquid junction coupling for capillary zone electrophoresis/ion spray mass spectrometry
Lee, E. D., Mück, W. M., Henion, J. D., & Covey, T. R. (1989) · Journal of Mass Spectrometry · doi:10.1002/bms.1200180932 · Cited by 180 · see citing works
Hoopmann, M. R., Finney, G. L., & MacCoss, M. J. (2007) · Analytical Chemistry · doi:10.1021/ac0700833 · Cited by 166 · see citing works
Self-citationBusnel, J., Schoenmaker, B., Ramautar, R., Carrasco‐Pancorbo, A., Ratnayake, C. K., Feitelson, J. S., Chapman, J. D., Deelder, A. M., & Mayboroda, O. A. (2010) · Analytical Chemistry · doi:10.1021/ac102159d · Cited by 165 · see citing works
Faserl, K., Sarg, B., Kremser, L., & Lindner, H. H. (2011) · Analytical Chemistry · doi:10.1021/ac2010372 · Cited by 153 · see citing works
Decoupling CE and ESI for a more robust interface with MS
Maxwell, E. J., Zhong, X., Zhang, H., van Zeijl, N., & Chen, D. D. Y. (2010) · Electrophoresis · doi:10.1002/elps.200900517 · Cited by 150 · see citing works
Online Time-of-Flight Mass Spectrometric Analysis of Peptides Separated by Capillary Electrophoresis
Fang, L., Zhang, R., Williams, E. R., & Zare, R. N. (1994) · Analytical Chemistry · doi:10.1021/ac00093a025 · Cited by 129 · see citing works
Comparison of Database Search Strategies for High Precursor Mass Accuracy MS/MS Data
Hsieh, E. J., Hoopmann, M. R., MacLean, B., & MacCoss, M. J. (2009) · Journal of Proteome Research · doi:10.1021/pr900816a · Cited by 123 · see citing works
Self-citationInteraction of capillary zone electrophoresis with a sheath flow cuvette detector
Cheng, Y. F., Wu, S., Chen, D. D. Y., & Dovic̀hi, N. J. (1990) · Analytical Chemistry · doi:10.1021/ac00204a014 · Cited by 98 · see citing works
Self-citationComprehensive on-line RPLC-CZE-MS of peptides
Lewis, K. C., Opiteck, G. J., Jorgenson, J. W., & Sheeley, D. M. (1997) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(97)00009-3 · Cited by 96 · see citing works
Zamfir, A. D. (2007) · Journal of Chromatography A · doi:10.1016/j.chroma.2007.03.115 · Cited by 87 · see citing works
On-line capillary electrophoresis with Fourier transform ion cyclotron resonance mass spectrometry
Hofstadler, S. A., Wahl, J. H., Bruce, J. E., & Smith, R. D. (1993) · Journal of the American Chemical Society · doi:10.1021/ja00068a070 · Cited by 72 · see citing works
Wu, J.-T., Qian, M. G., Li, M. X., Liu, L., & Lubman, D. M. (1996) · Analytical Chemistry · doi:10.1021/ac960405v · Cited by 63 · see citing works
Finney, G. L., Blackler, A. R., Hoopmann, M. R., Canterbury, J. D., Wu, C. C., & MacCoss, M. J. (2008) · Analytical Chemistry · doi:10.1021/ac701649e · Cited by 61 · see citing works
Self-citationRecent advances in CE‐MS: Synergy of wet chemistry and instrumentation innovations
Pantůčková, P., Gebauer, P., Boček, P., & Křivánková, L. (2010) · Electrophoresis · doi:10.1002/elps.201000382 · Cited by 54 · see citing works
Muddiman, D. C., Rockwood, A. L., Gao, Q., Severs, J. C., Udseth, H. R., Smith, R. D., & Proctor, A. (1995) · Analytical Chemistry · doi:10.1021/ac00119a027 · Cited by 53 · see citing works
Hofstadler, S. A., Wahl, J. H., Bakhtiar, R., Anderson, G., Bruce, J. E., & Smith, R. D. (1994) · Journal of the American Society for Mass Spectrometry · doi:10.1016/1044-0305(94)87014-4 · Cited by 50 · see citing works
Dada, O. O., Essaka, D. C., Hindsgaul, O., Palcic, M. M., Prendergast, J. M., Schnaar, R. L., & Dovic̀hi, N. J. (2011) · Analytical Chemistry · doi:10.1021/ac103374x · Cited by 40 · see citing works
Self-citationExchange of comments on data acquisition for chromatographic peaks
Guiochon, G. A., & Sepaniak, M. J. (1991) · Analytical Chemistry · doi:10.1021/ac00001a013 · Cited by 14 · see citing works
Reply to comment on "Data acquisition for chromatographic peaks"
Duell, K. A., Avery, J. P., Rowlen, K. L., & Birks, J. W. (1991) · Analytical Chemistry · doi:10.1021/ac00001a014 · Cited by 7 · see citing works
Flagged first, then by citations
1 of the 39 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Wang, Y., Fonslow, B. R., Wong, C. C. L., Nakorchevsky, A., & Yates, J. R. (2012) · Analytical Chemistry · doi:10.1021/ac301091m · Cited by 144 · see citing works
Recent developments in capillary and microchip electroseparations of peptides (2011–2013)
Kašička, V. (2013) · Electrophoresis · doi:10.1002/elps.201300331 · Cited by 130 · see citing works
Li, Y., Champion, M. M., Sun, L., Champion, P. A. D., Wojcik, R., & Dovichi, N. J. (2012) · Analytical Chemistry · doi:10.1021/ac202899p · Cited by 128 · see citing works
Self-citationRecent trends of capillary electrophoresis‐mass spectrometry in proteomics research
Gomes, F. P., & Yates, J. R. (2019) · Mass Spectrometry Reviews · doi:10.1002/mas.21599 · Cited by 112 · see citing works
Ibáñez, C., Simó, C., García‐Cañas, V., Cifuentes, A., & Castro‐Puyana, M. (2013) · Analytica Chimica Acta · doi:10.1016/j.aca.2013.07.042 · Cited by 109 · see citing works
Zhu, G., Sun, L., Yan, X., & Dovichi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac303750g · Cited by 103 · see citing works
Self-citationOptimizing capillary electrophoresis for top‐down proteomics of 30–80 kDa proteins
Li, Y., Compton, P. D., Tran, J. C., Ntai, I., & Kelleher, N. L. (2014) · PROTEOMICS · doi:10.1002/pmic.201300381 · Cited by 95 · see citing works
Self-citationMetabolome analysis based on capillary electrophoresis-mass spectrometry
Hirayama, A., Wakayama, M., & Soga, T. (2014) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2014.05.005 · Cited by 91 · see citing works
CE–MS for proteomics: Advances in interface development and application
Ramautar, R., Heemskerk, A. A. M., Hensbergen, P. J., Deelder, A. M., Busnel, J.-M., & Mayboroda, O. A. (2012) · Journal of Proteomics · doi:10.1016/j.jprot.2012.04.050 · Cited by 86 · see citing works
Klepárnı́k, K. (2012) · Electrophoresis · doi:10.1002/elps.201200488 · Cited by 81 · see citing works
CE‐MS‐based proteomics in biomarker discovery and clinical application
Pontillo, C., Filip, S., Borràs, D. M., Mullen, W., Vlahou, A., & Mischak, H. (2015) · PROTEOMICS – Clinical Applications · doi:10.1002/prca.201400115 · Cited by 77 · see citing works
Lindenburg, P. W., Haselberg, R., Rozing, G. P., & Ramautar, R. (2014) · Chromatographia · doi:10.1007/s10337-014-2795-5 · Cited by 74 · see citing works
Zhong, X., Zhang, Z., Jiang, S., & Li, L. (2013) · Electrophoresis · doi:10.1002/elps.201300451 · Cited by 74 · see citing works
Sun, L., Knierman, M. D., Zhu, G., & Dovic̀hi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac4008122 · Cited by 65 · see citing works
Self-citationCapillary zone electrophoresis-mass spectrometry for bottom-up proteomics
Zhang, Z., Qu, Y., & Dovichi, N. J. (2018) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2018.08.008 · Cited by 61 · see citing works
Self-citationCE–ESI‐MS for bottom‐up proteomics: Advances in separation, interfacing and applications
Heemskerk, A. A. M., Deelder, A. M., & Mayboroda, O. A. (2016) · Mass Spectrometry Reviews · doi:10.1002/mas.21432 · Cited by 61 · see citing works
Wang, Z., Ma, H., Smith, K., & Wu, S. (2017) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2017.09.001 · Cited by 57 · see citing works
Sun, L., Zhu, G., & Dovic̀hi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac400523x · Cited by 55 · see citing works
Self-citationZhang, Z., Sun, L., Zhu, G., Yan, X., & Dovichi, N. J. (2015) · Talanta · doi:10.1016/j.talanta.2015.01.040 · Cited by 53 · see citing works
Self-citationLi, Y., Wojcik, R., Dovic̀hi, N. J., & Champion, M. M. (2012) · Analytical Chemistry · doi:10.1021/ac300926h · Cited by 52 · see citing works
Self-citationA Comprehensive Guide for Performing Sample Preparation and Top-Down Protein Analysis
Padula, M. P., Berry, I. J., O’Rourke, M. B., Raymond, B. B. A., Santos, J., & Djordjevic, S. P. (2017) · Proteomes · doi:10.3390/proteomes5020011 · Cited by 52 · see citing works
Yan, X., Essaka, D. C., Sun, L., Zhu, G., & Dovic̀hi, N. J. (2013) · PROTEOMICS · doi:10.1002/pmic.201300062 · Cited by 40 · see citing works
Self-citationSchiavone, N. M., Sarver, S. A., Sun, L., Wojcik, R., & Dovichi, N. J. (2015) · Journal of Chromatography B · doi:10.1016/j.jchromb.2015.04.001 · Cited by 39 · see citing works
Self-citationSun, L., Zhu, G., Li, Y., Wojcik, R., Yang, P., & Dovic̀hi, N. J. (2012) · PROTEOMICS · doi:10.1002/pmic.201200100 · Cited by 37 · see citing works
Self-citationOn-line amino acid-based capillary isoelectric focusing-ESI-MS/MS for protein digests analysis
Zhu, G., Sun, L., Yang, P., & Dovic̀hi, N. J. (2012) · Analytica Chimica Acta · doi:10.1016/j.aca.2012.04.026 · Cited by 35 · see citing works
Self-citationProfiling of nanoparticle–protein interactions by electrophoresis techniques
Zarei, M., & Aalaie, J. (2018) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-018-1401-3 · Cited by 32 · see citing works
Sun, L., Zhu, G., Mou, S., Zhao, Y., Champion, M. M., & Dovic̀hi, N. J. (2014) · Journal of Chromatography A · doi:10.1016/j.chroma.2014.07.024 · Cited by 31 · see citing works
Self-citationSun, L., Li, Y., Champion, M. M., Zhu, G., Wojcik, R., & Dovic̀hi, N. J. (2013) · The Analyst · doi:10.1039/c3an00287j · Cited by 31 · see citing works
Self-citationZhu, G., Sun, L., Keithley, R. B., & Dovic̀hi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac4009868 · Cited by 30 · see citing works
Self-citationSun, L., Zhu, G., Yan, X., & Dovic̀hi, N. J. (2013) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2013.07.018 · Cited by 30 · see citing works
Self-citationBoley, D. A., Zhang, Z., & Dovichi, N. J. (2017) · Journal of Chromatography A · doi:10.1016/j.chroma.2017.07.022 · Cited by 29 · see citing works
Self-citationIto, E., Nakajima, K., Waki, H., Miseki, K., Shimada, T., Sato, T.-A., Kakehi, K., Suzuki, M., Taniguchi, N., & Suzuki, A. (2013) · Analytical Chemistry · doi:10.1021/ac401460f · Cited by 29 · see citing works
Zhu, G., Sun, L., Linkous, T., Kernaghan, D., McGivney, J. B., & Dovic̀hi, N. J. (2014) · Electrophoresis · doi:10.1002/elps.201300545 · Cited by 28 · see citing works
Self-citationZhu, G., Sun, L., Yan, X., & Dovic̀hi, N. J. (2013) · Analytica Chimica Acta · doi:10.1016/j.aca.2013.11.057 · Cited by 20 · see citing works
Self-citationSurvival of Host Blood Proteins in Ixodes scapularis (Acari: Ixodidae) Ticks: A Time Course Study
Laskay, Ü. A., Breci, L. A., Vilcins, I.-M. E., Dietrich, G., Barbour, A. G., Piesman, J. F., & Wysocki, V. H. (2013) · Journal of Medical Entomology · doi:10.1603/me12125 · Cited by 17 · see citing works
Gusenkov, S., & Stutz, H. (2018) · Electrophoresis · doi:10.1002/elps.201700413 · Cited by 12 · see citing works
Rinas, A., Jenkins, C., & Orsburn, B. C. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/559591 · Cited by 6 · see citing works
Electrospray Ionization Interface Development for Capillary Electrophoresis-Mass Spectrometry
Risley, J. M., Jong, C. A. G. D., & Chen, D. D. Y. (2016) · Wiley-VCH eBooks · doi:10.1002/9783527693801.ch2 · Cited by 6 · see citing works
Prasse, C., & Ternes, T. A. (2016) · Comprehensive analytical chemistry · doi:10.1016/bs.coac.2016.02.010 · Cited by 6 · see citing works
Orsburn, B. C., Miller, S. D., & Jenkins, C. (2022) · Proteomes · doi:10.3390/proteomes10010003 · Cited by 6 · see citing works
Therapeutic Monoclonal Antibody Intact Mass Analysis by Capillary Electrophoresis–Mass Spectrometry
Han, M., Rock, B. M., Pearson, J. T., Wang, Y., & Rock, D. A. (2016) · Springer eBooks · doi:10.1007/978-3-319-46240-0_3 · Cited by 2 · see citing works
Desiderio, C., & Muntiu, A. (2025) · Journal of Chromatography Open · doi:10.1016/j.jcoa.2025.100293
- Authors
- Wojcik, R., Li, Y., MacCoss, M. J., & Dovichi, N. J.
- Affiliations
- University of Notre Dame (US)
- University of Washington (US)
- Venue
- Talanta
- Publisher
- Elsevier BV
- Published
- 2012-01
- Volume
- 88
- Pages
- 324-329
- ISSN
- 0039-9140 (ISSN-L)
- PMC
- PMC3266533
- OpenAlex
- W2029739770
- Cited by
- 43
- References
- 39
- Citations by year
- 2025: 1 · 2022: 1 · 2019: 2 · 2018: 3 · 2017: 3 · 2016: 3 · 2015: 3 · 2014: 6 · 2013: 14 · 2012: 6
- FWCI
- 3.91
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Talanta (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (R01GM096767)
- Topics
- Physical Sciences › Chemistry › Spectroscopy › Mass Spectrometry Techniques and Applications
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Physical Sciences › Engineering › Biomedical Engineering › Microfluidic and Capillary Electrophoresis Applications
- Keywords
- capillary electrophoresis, mass spectrometry detection, peptide separation, tandem mass spectrometry, linear ion trap, tryptic peptides, detection limit, mass resolution, response time (sensor)
- MeSH terms
- Molecular Weight, Peptides, Saccharomyces cerevisiae, Sensitivity and Specificity, Time Factors, Electrophoresis, Capillary, Saccharomyces cerevisiae Proteins, Tandem Mass Spectrometry
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review