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The Whereabouts of microRNA Actions: Cytoplasm and Beyond

Leung, Anthony K.L.·2015·Trends in Cell Biology
DOI 10.1016/j.tcb.2015.07.005PMC PMC4610250
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  1. La Rocca, 2015, In vivo, Argonaute-bound microRNAs exist predominantly in a reservoir of low molecular weight complexes not associated with mRNA, Proc. Natl. Acad. Sci. U.S.A., 112, 767, 10.1073/pnas.1424217112 · DOI
  2. Ohrt, 2008, Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells, Nucleic Acids Res., 36, 6439, 10.1093/nar/gkn693 · DOI
  3. Höck, 2007, Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells, EMBO Rep., 8, 1052, 10.1038/sj.embor.7401088 · DOI · Paper page
  4. Liu, 2005, MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies, Nat. Cell Biol., 7, 719, 10.1038/ncb1274 · DOI · Paper page
  5. Sen, 2005, Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies, Nat. Cell Biol., 7, 633, 10.1038/ncb1265 · DOI
  6. Leung, 2013, Quantifying Argonaute proteins in and out of GW/P-bodies: implications in microRNA activities, Adv. Exp. Med. Biol., 768, 165, 10.1007/978-1-4614-5107-5_10 · DOI
  7. Cougot, 2004, Cytoplasmic foci are sites of mRNA decay in human cells, J. Cell Biol., 165, 31, 10.1083/jcb.200309008 · DOI
  8. Leung, 2006, Quantitative analysis of Argonaute protein reveals microRNA-dependent localization to stress granules, Proc. Natl. Acad. Sci. U.S.A., 103, 18125, 10.1073/pnas.0608845103 · DOI
  9. Bhattacharyya, 2006, Relief of microRNA-mediated translational repression in human cells subjected to stress, Cell, 125, 1111, 10.1016/j.cell.2006.04.031 · DOI
  10. Aizer, 2014, Quantifying mRNA targeting to P-bodies in living human cells reveals their dual role in mRNA decay and storage, J. Cell Sci., 127, 4443, 10.1242/jcs.152975 · DOI
  11. Brengues, 2005, Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies, Science, 310, 486, 10.1126/science.1115791 · DOI
  12. Arribere, 2011, Reconsidering movement of eukaryotic mRNAs between polysomes and P bodies, Mol. Cell, 44, 745, 10.1016/j.molcel.2011.09.019 · DOI
  13. Cougot, 2008, Dendrites of mammalian neurons contain specialized P-body-like structures that respond to neuronal activation, J. Neurosci., 28, 13793, 10.1523/JNEUROSCI.4155-08.2008 · DOI · Paper page
  14. Savas, 2010, A role for huntington disease protein in dendritic RNA granules, J. Biol Chem., 285, 13142, 10.1074/jbc.M110.114561 · DOI
  15. Kim, 2014, Traffic into silence: endomembranes and post-transcriptional RNA silencing, EMBO J., 33, 968, 10.1002/embj.201387262 · DOI
  16. Cikaluk, 1999, GERp95, a membrane-associated protein that belongs to a family of proteins involved in stem cell differentiation, Mol. Biol. Cell, 10, 3357, 10.1091/mbc.10.10.3357 · DOI
  17. Brodersen, 2012, Isoprenoid biosynthesis is required for miRNA function and affects membrane association of ARGONAUTE 1 in Arabidopsis, Proc. Natl. Acad. Sci. U.S.A., 109, 1778, 10.1073/pnas.1112500109 · DOI
  18. Shi, 2012, The mevalonate pathway regulates microRNA activity in Caenorhabditis elegans, Proc. Natl. Acad. Sci. U.S.A., 109, 4568, 10.1073/pnas.1202421109 · DOI
  19. Stalder, 2013, The rough endoplasmatic reticulum is a central nucleation site of siRNA-mediated RNA silencing, EMBO J., 32, 1115, 10.1038/emboj.2013.52 · DOI
  20. Li, 2013, MicroRNAs inhibit the translation of target mRNAs on the endoplasmic reticulum in Arabidopsis, Cell, 153, 562, 10.1016/j.cell.2013.04.005 · DOI
  21. Wu, 2013, Functionally diverse microRNA effector complexes are regulated by extracellular signaling, Mol. Cell, 52, 113, 10.1016/j.molcel.2013.08.023 · DOI
  22. Reid, 2012, Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by ribosome profiling, J. Biol. Chem., 287, 5518, 10.1074/jbc.M111.312280 · DOI · Paper page
  23. Jan, 2014, Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling, Science, 346, 716, 10.1126/science.1257521 · DOI
  24. Lee, 2009, Silencing by small RNAs is linked to endosomal trafficking, Nat. Cell Biol., 11, 1150, 10.1038/ncb1930 · DOI
  25. Gibbings, 2009, Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity, Nat. Cell Biol., 11, 1143, 10.1038/ncb1929 · DOI
  26. Cortez, 2011, MicroRNAs in body fluids: the mix of hormones and biomarkers, Nat. Rev. Clin. Oncol., 8, 467, 10.1038/nrclinonc.2011.76 · DOI
  27. Squadrito, 2014, Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells, Cell Rep., 8, 1432, 10.1016/j.celrep.2014.07.035 · DOI · Paper page
  28. Ono, 2014, Exosomes from bone marrow mesenchymal stem cells contain a microRNA that promotes dormancy in metastatic breast cancer cells, Sci. Signal., 7, ra63, 10.1126/scisignal.2005231 · DOI
  29. Morel, 2013, Neuronal exosomal miRNA-dependent translational regulation of astroglial glutamate transporter GLT1, J. Biol. Chem., 288, 7105, 10.1074/jbc.M112.410944 · DOI · Paper page
  30. Ghosh, 2015, Polysome arrest restricts miRNA turnover by preventing their exosomal export in growth retarded mammalian cells, Mol. Biol. Cell, 26, 1072, 10.1091/mbc.e14-11-1521 · DOI
  31. Braun, 2013, The role of GW182 proteins in miRNA-mediated gene silencing, Adv. Exp. Med. Biol., 768, 147, 10.1007/978-1-4614-5107-5_9 · DOI
  32. Miyoshi, 2009, Characterization of the miRNA-RISC loading complex and miRNA-RISC formed in the Drosophila miRNA pathway, RNA, 15, 1282, 10.1261/rna.1541209 · DOI
  33. Frohn, 2012, Dicer-dependent and -independent Argonaute2 protein interaction networks in mammalian cells, Mol. Cell. Proteomics, 11, 1442, 10.1074/mcp.M112.017756 · DOI
  34. Gibbings, 2012, Human prion protein binds Argonaute and promotes accumulation of microRNA effector complexes, Nat. Struct. Mol. Biol., 19, 517, 10.1038/nsmb.2273 · DOI
  35. Olejniczak, 2013, Long-lived microRNA-Argonaute complexes in quiescent cells can be activated to regulate mitogenic responses, Proc. Natl. Acad. Sci. U.S.A., 110, 157, 10.1073/pnas.1219958110 · DOI
  36. Flores, 2014, Differential RISC association of endogenous human microRNAs predicts their inhibitory potential, Nucleic Acids Res., 42, 4629, 10.1093/nar/gkt1393 · DOI
  37. Janas, 2012, Alternative RISC assembly: binding and repression of microRNA-mRNA duplexes by human Ago proteins, RNA, 18, 2041, 10.1261/rna.035675.112 · DOI
  38. Eiring, 2010, miR-328 functions as an RNA decoy to modulate hnRNP E2 regulation of mRNA translation in leukemic blasts, Cell, 140, 652, 10.1016/j.cell.2010.01.007 · DOI
  39. King, 2014, The RNA-binding protein TDP-43 selectively disrupts microRNA-1/206 incorporation into the RNA-induced silencing complex, J. Biol. Chem., 289, 14263, 10.1074/jbc.M114.561902 · DOI
  40. Fabbri, 2012, MicroRNAs bind to Toll-like receptors to induce prometastatic inflammatory response, Proc. Natl. Acad. Sci. U.S.A., 109, E2110, 10.1073/pnas.1209414109 · DOI · Paper page
  41. Chen, 2014, MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production, Proc. Natl. Acad. Sci. U.S.A., 111, E2676, 10.1073/pnas.1408037111 · DOI
  42. Zamudio, 2014, Argonaute-bound small RNAs from promoter-proximal RNA polymerase II, Cell, 156, 920, 10.1016/j.cell.2014.01.041 · DOI
  43. Winter, 2011, Argonaute proteins regulate microRNA stability: increased microRNA abundance by Argonaute proteins is due to microRNA stabilization, RNA Biol., 8, 1149, 10.4161/rna.8.6.17665 · DOI
  44. Smibert, 2013, Homeostatic control of Argonaute stability by microRNA availability, Nat. Struct. Mol. Biol., 20, 789, 10.1038/nsmb.2606 · DOI
  45. Martinez, 2013, Argonaute2 expression is post-transcriptionally coupled to microRNA abundance, RNA, 19, 605, 10.1261/rna.036434.112 · DOI
  46. Leung, 2011, Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs, Nat. Struct. Mol. Biol., 18, 237, 10.1038/nsmb.1991 · DOI
  47. Karginov, 2013, Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates, Genes Dev., 27, 1624, 10.1101/gad.215939.113 · DOI
  48. Jee, 2014, Alteration of miRNA activity via context-specific modifications of Argonaute proteins, Trends Cell Biol., 24, 546, 10.1016/j.tcb.2014.04.008 · DOI
  49. Horman, 2013, Akt-mediated phosphorylation of Argonaute 2 downregulates cleavage and upregulates translational repression of microRNA targets, Mol. Cell, 50, 356, 10.1016/j.molcel.2013.03.015 · DOI
  50. Leung, 2011, Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm, Mol. Cell, 42, 489, 10.1016/j.molcel.2011.04.015 · DOI
  51. Seo, 2013, Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells, Cell Host Microbe, 14, 435, 10.1016/j.chom.2013.09.002 · DOI
  52. Wu, 2011, Hypoxia potentiates microRNA-mediated gene silencing through posttranslational modification of Argonaute2, Mol. Cell. Biol, 31, 4760, 10.1128/MCB.05776-11 · DOI
  53. Bronevetsky, 2013, T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire, J. Exp. Med., 210, 417, 10.1084/jem.20111717 · DOI
  54. Sahin, 2014, Sumoylation of human argonaute 2 at lysine-402 regulates its stability, PLoS ONE, 9, e102957, 10.1371/journal.pone.0102957 · DOI
  55. Mazumder, 2013, A transient reversal of miRNA-mediated repression controls macrophage activation, EMBO Rep., 14, 1008, 10.1038/embor.2013.149 · DOI
  56. Shen, 2013, EGFR modulates microRNA maturation in response to hypoxia through phosphorylation of AGO2, Nature, 497, 383, 10.1038/nature12080 · DOI
  57. Adams, 2014, Aberrant regulation and function of microRNAs in cancer, Curr. Biol., 24, R762, 10.1016/j.cub.2014.06.043 · DOI
  58. Meister, 2004, Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs, Mol. Cell, 15, 185, 10.1016/j.molcel.2004.07.007 · DOI · Paper page
  59. Hwang, 2007, A hexanucleotide element directs microRNA nuclear import, Science, 315, 97, 10.1126/science.1136235 · DOI
  60. Liao, 2010, Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers, PLoS ONE, 5, e10563, 10.1371/journal.pone.0010563 · DOI
  61. Park, 2010, Mature microRNAs identified in highly purified nuclei from HCT116 colon cancer cells, RNA Biol., 7, 606, 10.4161/rna.7.5.13215 · DOI
  62. Jeffries, 2011, Nuclear and cytoplasmic localization of neural stem cell microRNAs, RNA, 17, 675, 10.1261/rna.2006511 · DOI
  63. Gagnon, 2014, RNAi factors are present and active in human cell nuclei, Cell Rep., 6, 211, 10.1016/j.celrep.2013.12.013 · DOI · Paper page
  64. Roberts, 2014, The microRNA biology of the mammalian nucleus, Mol. Ther. Nucleic Acids, 3, e188, 10.1038/mtna.2014.40 · DOI
  65. Robb, 2005, Specific and potent RNAi in the nucleus of human cells, Nat. Struct. Mol. Biol., 12, 133, 10.1038/nsmb886 · DOI
  66. Weinmann, 2009, Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs, Cell, 136, 496, 10.1016/j.cell.2008.12.023 · DOI
  67. Hsu, 2014, Development and applications of CRISPR-Cas9 for genome engineering, Cell, 157, 1262, 10.1016/j.cell.2014.05.010 · DOI · Paper page
  68. Boulon, 2010, The nucleolus under stress, Mol. Cell, 40, 216, 10.1016/j.molcel.2010.09.024 · DOI · Paper page
  69. Politz, 2006, MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells, Proc. Natl. Acad. Sci. U.S.A., 103, 18957, 10.1073/pnas.0609466103 · DOI
  70. Marcon, 2008, miRNA and piRNA localization in the male mammalian meiotic nucleus, Chromosome Res., 16, 243, 10.1007/s10577-007-1190-6 · DOI
  71. Politz, 2009, MicroRNAs with a nucleolar location, RNA, 15, 1705, 10.1261/rna.1470409 · DOI
  72. Li, 2013, Dynamic localisation of mature microRNAs in Human nucleoli is influenced by exogenous genetic materials, PLoS ONE, 8, e70869, 10.1371/journal.pone.0070869 · DOI
  73. Bai, 2014, Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolus-associated microRNAs, FEBS Open Bio, 4, 441, 10.1016/j.fob.2014.04.010 · DOI
  74. Castanotto, 2009, CRM1 mediates nuclear-cytoplasmic shuttling of mature microRNAs, Proc. Natl. Acad. Sci. U.S.A., 106, 21655, 10.1073/pnas.0912384106 · DOI
  75. Reyes-Gutierrez, 2014, A mRNA and cognate microRNAs localize in the nucleolus, Nucleus, 5, 636, 10.4161/19491034.2014.990864 · DOI
  76. Temperley, 2010, Human mitochondrial mRNAs: like members of all families, similar but different, Biochim. Biophys. Acta, 1797, 1081, 10.1016/j.bbabio.2010.02.036 · DOI
  77. Bandiera, 2011, Nuclear outsourcing of RNA interference components to human mitochondria, PLoS ONE, 6, e20746, 10.1371/journal.pone.0020746 · DOI
  78. Lung, 2006, Identification of small non-coding RNAs from mitochondria and chloroplasts, Nucleic Acids Res., 34, 3842, 10.1093/nar/gkl448 · DOI
  79. Kren, 2009, MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis, RNA Biol., 6, 65, 10.4161/rna.6.1.7534 · DOI
  80. Bian, 2010, Identification of mouse liver mitochondria-associated miRNAs and their potential biological functions, Cell Res., 20, 1076, 10.1038/cr.2010.119 · DOI
  81. Barrey, 2011, Pre-microRNA and mature microRNA in human mitochondria, PLoS ONE, 6, e20220, 10.1371/journal.pone.0020220 · DOI
  82. Das, 2012, Nuclear miRNA regulates the mitochondrial genome in the heart, Circ. Res., 110, 1596, 10.1161/CIRCRESAHA.112.267732 · DOI
  83. Sripada, 2012, Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA, PLoS ONE, 7, e44873, 10.1371/journal.pone.0044873 · DOI
  84. Zhang, 2014, MicroRNA directly enhances mitochondrial translation during muscle differentiation, Cell, 158, 607, 10.1016/j.cell.2014.05.047 · DOI
  85. Das, 2014, miR-181c regulates the mitochondrial genome, bioenergetics, and propensity for heart failure in vivo, PLoS ONE, 9, e96820, 10.1371/journal.pone.0096820 · DOI
  86. Roux, 2012, A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells, J. Cell Biol., 196, 801, 10.1083/jcb.201112098 · DOI · Paper page
  87. Rhee, 2013, Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging, Science, 339, 1328, 10.1126/science.1230593 · DOI · Paper page
  88. Williams, 2014, Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling, Science, 346, 748, 10.1126/science.1257522 · DOI · Paper page
  89. Roy-Chaudhuri, 2014, Regulation of microRNA-mediated gene silencing by microRNA precursors, Nat. Struct. Mol. Biol., 21, 825, 10.1038/nsmb.2862 · DOI
  90. Wu, 2000, Human RNase III is a 160-kDa protein involved in preribosomal RNA processing, J. Biol. Chem., 275, 36957, 10.1074/jbc.M005494200 · DOI
  91. Shiohama, 2007, Nucleolar localization of DGCR8 and identification of eleven DGCR8-associated proteins, Exp. Cell Res., 313, 4196, 10.1016/j.yexcr.2007.07.020 · DOI
  92. Bosson, 2014, Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition, Mol. Cell, 56, 347, 10.1016/j.molcel.2014.09.018 · DOI
  93. Denzler, 2014, Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance, Mol. Cell, 54, 766, 10.1016/j.molcel.2014.03.045 · DOI

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Metadata

Authors
Leung, A. K. L.
Venue
Trends in Cell Biology
Publisher
Elsevier BV
Published
2015-10
Volume
25
Issue
10
Pages
601-610
ISSN
0962-8924
DOI
10.1016/j.tcb.2015.07.005
PMC
PMC4610250
Cited by
186
References
3
Language
en
Licence
www.elsevier.com/tdm/userlicense/1.0/ (tdm)

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