Quantitative Proteomics Using Ultralow Flow Capillary Electrophoresis–Mass Spectrometry

Global analysis of protein expression in yeast

Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., & Weissman, J. S. (2003) · Nature · doi:10.1038/nature02046 · Cited by 3,750 · see citing works

An Automated Multidimensional Protein Identification Technology for Shotgun Proteomics

Wolters, D. A., Washburn, M. P., & Yates, J. R. (2001) · Analytical Chemistry · doi:10.1021/ac010617e · Cited by 1,821 · see citing works

Highly Selective Enrichment of Phosphorylated Peptides from Peptide Mixtures Using Titanium Dioxide Microcolumns

Larsen, M. R., Thingholm, T. E., Jensen, O. N., Roepstorff, P., & Jørgensen, T. J. D. (2005) · Molecular & Cellular Proteomics · doi:10.1074/mcp.t500007-mcp200 · Cited by 1,478 · see citing works

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

de Godoy, L. M. F., Olsen, J. V., Cox, J., Nielsen, M. L., Hubner, N. C., Fröhlich, F., Walther, T. C., & Mann, M. (2008) · Nature · doi:10.1038/nature07341 · Cited by 873 · see citing works

On-line mass spectrometric detection for capillary zone electrophoresis

Olivares, J. A., Nhung, N. T., Yonker, C. R., & Smith, R. D. (1987) · Analytical Chemistry · doi:10.1021/ac00135a034 · Cited by 635 · see citing works

Effect of different solution flow rates on analyte ion signals in nano-ESI MS, or: when does ESI turn into nano-ESI?

Schmidt, A., Karas, M., & Dülcks, T. (2003) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(03)00128-4 · Cited by 535 · see citing works

Improved electrospray ionization interface for capillary zone electrophoresis-mass spectrometry

Smith, R. D., Barinaga, C. J., & Udseth, H. R. (1988) · Analytical Chemistry · doi:10.1021/ac00169a022 · Cited by 534 · see citing works

Two‐dimensional separation of peptides using RP‐RP‐HPLC system with different pH in first and second separation dimensions

Gilár, M., Olivova, P., Daly, A. E., & Gebler, J. C. (2005) · Journal of Separation Science · doi:10.1002/jssc.200500116 · Cited by 427 · see citing works

Endosomal transport function in yeast requires a novel AAA‐type ATPase, Vps4p

Babst, M., Sato, T. K., Banta, L. M., & Emr, S. D. (1997) · The EMBO Journal · doi:10.1093/emboj/16.8.1820 · Cited by 424 · see citing works

Simplifying CE−MS Operation. 2. Interfacing Low-Flow Separation Techniques to Mass Spectrometry Using a Porous Tip

Moini, M. (2007) · Analytical Chemistry · doi:10.1021/ac0704560 · Cited by 322 · see citing works

Simplified capillary electrophoresis nanospray sheath‐flow interface for high efficiency and sensitive peptide analysis

Wojcik, R., Dada, O. O., Sadilek, M., & Dovichi, N. J. (2010) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.4672 · Cited by 234 · see citing works

Twenty years of interface development for capillary electrophoresis–electrospray ionization–mass spectrometry

Maxwell, E. J., & Chen, D. D. Y. (2008) · Analytica Chimica Acta · doi:10.1016/j.aca.2008.06.034 · Cited by 197 · see citing works

Evaluation and Optimization of ZIC-HILIC-RP as an Alternative MudPIT Strategy

Boersema, P. J., Divecha, N., Heck, A. J. R., & Mohammed, S. (2007) · Journal of Proteome Research · doi:10.1021/pr060589m · Cited by 190 · see citing works

Liquid junction coupling for capillary zone electrophoresis/ion spray mass spectrometry

Lee, E. D., Mück, W. M., Henion, J. D., & Covey, T. R. (1989) · Journal of Mass Spectrometry · doi:10.1002/bms.1200180932 · Cited by 180 · see citing works

Intact protein analysis in the biopharmaceutical field

Staub, A., Guillarme, D., Schappler, J., Veuthey, J., & Rudaz, S. L. (2011) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2011.01.031 · Cited by 179 · see citing works

Capillary electrophoresis and isoelectric focusing in peptide and protein analysis

Righetti, P. G., Sebastiano, R., & Citterio, A. (2012) · PROTEOMICS · doi:10.1002/pmic.201200378 · Cited by 166 · see citing works

High Capacity Capillary Electrophoresis-Electrospray Ionization Mass Spectrometry: Coupling a Porous Sheathless Interface with Transient-Isotachophoresis

Busnel, J., Schoenmaker, B., Ramautar, R., Carrasco‐Pancorbo, A., Ratnayake, C. K., Feitelson, J. S., Chapman, J. D., Deelder, A. M., & Mayboroda, O. A. (2010) · Analytical Chemistry · doi:10.1021/ac102159d · Cited by 165 · see citing works

Optimization and Evaluation of a Sheathless Capillary Electrophoresis–Electrospray Ionization Mass Spectrometry Platform for Peptide Analysis: Comparison to Liquid Chromatography–Electrospray Ionization Mass Spectrometry

Faserl, K., Sarg, B., Kremser, L., & Lindner, H. H. (2011) · Analytical Chemistry · doi:10.1021/ac2010372 · Cited by 153 · see citing works

Decoupling CE and ESI for a more robust interface with MS

Maxwell, E. J., Zhong, X., Zhang, H., van Zeijl, N., & Chen, D. D. Y. (2010) · Electrophoresis · doi:10.1002/elps.200900517 · Cited by 150 · see citing works

Low-Flow Sheathless Capillary Electrophoresis–Mass Spectrometry for Sensitive Glycoform Profiling of Intact Pharmaceutical Proteins

Haselberg, R., de Jong, G. J., & Somsen, G. W. (2013) · Analytical Chemistry · doi:10.1021/ac303158f · Cited by 149 · see citing works

Improving the Comprehensiveness and Sensitivity of Sheathless Capillary Electrophoresis–Tandem Mass Spectrometry for Proteomic Analysis

Wang, Y., Fonslow, B. R., Wong, C. C. L., Nakorchevsky, A., & Yates, J. R. (2012) · Analytical Chemistry · doi:10.1021/ac301091m · Cited by 144 · see citing works

Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry as an Alternative Proteomics Platform to Ultraperformance Liquid Chromatography-Electrospray Ionization-Tandem Mass Spectrometry for Samples of Intermediate Complexity

Li, Y., Champion, M. M., Sun, L., Champion, P. A. D., Wojcik, R., & Dovichi, N. J. (2012) · Analytical Chemistry · doi:10.1021/ac202899p · Cited by 128 · see citing works

A simple and robust conductive graphite coating for sheathless electrospray emitters used in capillary electrophoresis/mass spectrometry

Nilsson, S., Wetterhall, M., Bergquist, J., Nyholm, L., & Markides, K. E. (2001) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.466 · Cited by 110 · see citing works

Performance of a sheathless porous tip sprayer for capillary electrophoresis–electrospray ionization-mass spectrometry of intact proteins

Haselberg, R., Ratnayake, C. K., de Jong, G. J., & Somsen, G. W. (2010) · Journal of Chromatography A · doi:10.1016/j.chroma.2010.10.006 · Cited by 109 · see citing works

Single-Shot Proteomics Using Capillary Zone Electrophoresis–Electrospray Ionization-Tandem Mass Spectrometry with Production of More than 1 250 <i>Escherichia coli</i> Peptide Identifications in a 50 min Separation

Zhu, G., Sun, L., Yan, X., & Dovichi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac303750g · Cited by 103 · see citing works

Ultra-Low Flow Electrospray Ionization-Mass Spectrometry for Improved Ionization Efficiency in Phosphoproteomics

Heemskerk, A. A. M., Busnel, J., Schoenmaker, B., Derks, R. J. E., Klychnikov, O. I., Hensbergen, P. J., Deelder, A. M., & Mayboroda, O. A. (2012) · Analytical Chemistry · doi:10.1021/ac300641x · Cited by 100 · see citing works

Over 10 000 Peptide Identifications from the HeLa Proteome by Using Single‐Shot Capillary Zone Electrophoresis Combined with Tandem Mass Spectrometry

Sun, L., Hebert, A. S., Yan, X., Zhao, Y., Westphall, M. S., Rush, M. J. P., Zhu, G., Champion, M. M., Coon, J. J., & Dovic̀hi, N. J. (2014) · Angewandte Chemie International Edition · doi:10.1002/anie.201409075 · Cited by 91 · see citing works

Rapid and multi-level characterization of trastuzumab using sheathless capillary electrophoresis-tandem mass spectrometry

Gahoual, R., Burr, A., Busnel, J.-M., Kuhn, L., Hammann, P., Beck, A., François, Y.-N., & Leize-Wagner, E. (2013) · mAbs · doi:10.4161/mabs.23995 · Cited by 90 · see citing works

CE–MS for proteomics: Advances in interface development and application

Ramautar, R., Heemskerk, A. A. M., Hensbergen, P. J., Deelder, A. M., Busnel, J.-M., & Mayboroda, O. A. (2012) · Journal of Proteomics · doi:10.1016/j.jprot.2012.04.050 · Cited by 86 · see citing works

Long-lived metallized tips for nanoliter electrospray mass spectrometry

Valaskovic, G. A., & McLafferty, F. W. (1996) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(96)00152-3 · Cited by 83 · see citing works

Comparing and Combining Capillary Electrophoresis Electrospray Ionization Mass Spectrometry and Nano–Liquid Chromatography Electrospray Ionization Mass Spectrometry for the Characterization of Post-translationally Modified Histones

Sarg, B., Faserl, K., Kremser, L., Halfinger, B., Sebastiano, R., & Lindner, H. H. (2013) · Molecular &amp; Cellular Proteomics · doi:10.1074/mcp.m112.024109 · Cited by 76 · see citing works

High-performance capillary electrophoresis of core histones and their acetylated modified derivatives

Lindner, H. H., Helliger, W., Dirschlmayer, A., Jaquemar, M., & Puschendorf, B. (1992) · Biochemical Journal · doi:10.1042/bj2830467 · Cited by 67 · see citing works

Flow-Through Microvial Facilitating Interface of Capillary Isoelectric Focusing and Electrospray Ionization Mass Spectrometry

Zhong, X., Maxwell, E. J., Ratnayake, C. K., Mack, S., & Chen, D. D. Y. (2011) · Analytical Chemistry · doi:10.1021/ac202130f · Cited by 66 · see citing works

The Microheterogeneity of the Mammalian H10Histone

Lindner, H. H., Sarg, B., Hoertnagl, B., & Helliger, W. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.21.13324 · Cited by 63 · see citing works

Hydrophilic Strong Anion Exchange (hSAX) Chromatography for Highly Orthogonal Peptide Separation of Complex Proteomes

Ritorto, M. S., Cook, K., Tyagi, K., Pedrioli, P. G. A., & Trost, M. (2013) · Journal of Proteome Research · doi:10.1021/pr301011r · Cited by 61 · see citing works

Integrated Capillary Zone Electrophoresis–Electrospray Ionization Tandem Mass Spectrometry System with an Immobilized Trypsin Microreactor for Online Digestion and Analysis of Picogram Amounts of RAW 264.7 Cell Lysate

Sun, L., Zhu, G., & Dovic̀hi, N. J. (2013) · Analytical Chemistry · doi:10.1021/ac400523x · Cited by 55 · see citing works

Novel sheathless CE-MS interface as an original and powerful infusion platform for nanoESI study: from intact proteins to high molecular mass noncovalent complexes

Gahoual, R., Busnel, J., Wolff, P., François, Y., & Leize‐Wagner, E. (2013) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-013-7226-1 · Cited by 48 · see citing works

Toward Proteome-Scale Identification and Quantification of Isoaspartyl Residues in Biological Samples

Yang, H., Fung, Y. M. E., Zubarev, A. R., et al. (2009) · Journal of Proteome Research · doi:10.1021/pr900428m · Cited by 43 · see citing works

Separation of phosphorylated histone H1 variants by high-performance capillary electrophoresis

Lindner, H. H., Helliger, W., Dirschlmayer, A., Talasz, H., Wurm, M., Sarg, B., Jaquemar, M., & Puschendorf, B. (1992) · Journal of Chromatography A · doi:10.1016/0021-9673(92)87126-s · Cited by 38 · see citing works

Application of high‐performance capillary electrophoresis to the analysis of H1 histones

Lindner, H. H., Wurm, M., Dirschlmayer, A., Sarg, B., & Helliger, W. (1993) · Electrophoresis · doi:10.1002/elps.1150140174 · Cited by 36 · see citing works

Testis-specific Linker Histone H1t Is Multiply Phosphorylated during Spermatogenesis

Sarg, B., Chwatal, S., Talasz, H., & Lindner, H. H. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m805925200 · Cited by 35 · see citing works

Analysis of histones, histone variants, and their post‐translationally modified forms

Lindner, H. H. (2008) · Electrophoresis · doi:10.1002/elps.200800094 · Cited by 33 · see citing works

Differentiating N-Terminal Aspartic and Isoaspartic Acid Residues in Peptides

Sargaeva, N. P., Lin, C. T., & O’Connor, P. B. (2011) · Analytical Chemistry · doi:10.1021/ac201223d · Cited by 30 · see citing works

Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring

Girolamo, F. D., Righetti, P. G., Soste, M., et al. (2013) · Journal of Proteomics · doi:10.1016/j.jprot.2013.05.037 · Cited by 15 · see citing works

Egisto Boschetti and Pier Giorgio Righetti: Low-abundance proteome discovery: state of the art and protocols

Boschetti, E., & Giorgio, P. (2014) · Cited by 13 · see citing works

Capillary electrophoresis analysis of histones, histone variants, and their post-translationally modified forms: a review.

Lindner, H. H., Sarg, B., & Helliger, W. (2004) · PubMed · Cited by 9 · see citing works

Recent trends of capillary electrophoresis‐mass spectrometry in proteomics research

Gomes, F. P., & Yates, J. R. (2019) · Mass Spectrometry Reviews · doi:10.1002/mas.21599 · Cited by 112 · see citing works

Single-Shot Top-Down Proteomics with Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry for Identification of Nearly 600 <i>Escherichia coli</i> Proteoforms

Lubeckyj, R. A., McCool, E. N., Shen, X., Kou, Q., Liu, X., & Sun, L. (2017) · Analytical Chemistry · doi:10.1021/acs.analchem.7b02532 · Cited by 96 · see citing works

Capillary zone electrophoresis-mass spectrometry for bottom-up proteomics

Zhang, Z., Qu, Y., & Dovichi, N. J. (2018) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2018.08.008 · Cited by 61 · see citing works

Over 2300 Phosphorylated Peptide Identifications with Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry in a 100 min Separation

Ludwig, K. R., Sun, L., Zhu, G., Dovichi, N. J., & Hummon, A. B. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b02457 · Cited by 56 · see citing works

Predicting Electrophoretic Mobility of Tryptic Peptides for High-Throughput CZE-MS Analysis

Krokhin, O. V., Anderson, G., Spicer, V., Sun, L., & Dovichi, N. J. (2017) · Analytical Chemistry · doi:10.1021/acs.analchem.6b04544 · Cited by 53 · see citing works

Capillary Electrophoresis–Nanoelectrospray Ionization–Selected Reaction Monitoring Mass Spectrometry via a True Sheathless Metal-Coated Emitter Interface for Robust and High-Sensitivity Sample Quantification

Guo, X., Fillmore, T. L., Gao, Y., & Tang, K. (2016) · Analytical Chemistry · doi:10.1021/acs.analchem.5b04912 · Cited by 54 · see citing works

Dynamic pH junction preconcentration in capillary electrophoresis- electrospray ionization-mass spectrometry for proteomics analysis

Zhu, G., Sun, L., & Dovichi, N. J. (2016) · The Analyst · doi:10.1039/c6an01140c · Cited by 52 · see citing works

Strong cation exchange-reversed phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry platform with high peak capacity for deep bottom-up proteomics

Chen, D., Shen, X., & Sun, L. (2018) · Analytica Chimica Acta · doi:10.1016/j.aca.2018.01.037 · Cited by 47 · see citing works

Quantitative Proteomics for Differential Protein Expression Profiling

Frese, C. K., van den Toorn, H., Heck, A. J. R., & Mohammed, S. (2019) · Wiley eBooks · doi:10.1002/9781119081661.ch1 · Cited by 4 · see citing works

Comparison of LFQ and IPTL for Protein Identification and Relative Quantification

Johannsen, C., Koehler, C. J., & Thiede, B. (2021) · Molecules · doi:10.3390/molecules26175330 · Cited by 3 · see citing works

Quantification by SRM-MS

Hossain, M. (2020) · Springer eBooks · doi:10.1007/978-3-030-53433-2_6

In Vivo Termini Amino Acid Labeling for Quantitative Proteomics

Nie, A., Zhang, L., Yan, G., Yao, J., Zhang, Y., Lu, H., Yang, P., & He, F. (2011) · Analytical Chemistry · doi:10.1021/ac201035f · Cited by 25 · see citing works

mTMT: An Alternative, Nonisobaric, Tandem Mass Tag Allowing for Precursor-Based Quantification

Paulo, J. A., & Gygi, S. P. (2019) · Analytical Chemistry · doi:10.1021/acs.analchem.9b03162 · Cited by 14 · see citing works