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Intrinsic Disorder and Protein Function
Abstract
0196237 to Z.O. and A.K.D and by NIH-1R01-LM06916 to A.K.D. and Z.O. Key words: native protein, random coil, molten globule, intrinsic disorder, protein structurefunction, genomics, proteomics, and bioinformatics Abbreviations: circular dichroism (CD), limited proteolysis (LP), nuclear magnetic resonance
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Many IDPs/IDRs are capable of at least partial ordering upon interaction with specific partners.
“Many IDPs/IDRs are capable of at least partial ordering upon interaction with specific partners [7–18].”
From Intrinsically disordered proteins play diverse roles in cell signaling (2022) · cites this paper as [9]
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Cites
Basic Methods in Molecular Biology
(1986) · Elsevier eBooks · doi:10.1016/b978-0-444-01082-7.x5001-2 · Cited by 3,163
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
Wright, P. E., & Dyson, H. J. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.3110 · Cited by 2,968
Intrinsically disordered protein
Dunker, A. K., Lawson, J. D., Brown, C. J., Williams, R. M., Romero, P., Oh, J. S., Oldfield, C. J., Campen, A. M., Ratliff, C. M., Hipps, K. W., et al. (2001) · Journal of Molecular Graphics and Modelling · doi:10.1016/s1093-3263(00)00138-8 · Cited by 2,272
Self-citationCoupling of folding and binding for unstructured proteins
Dyson, H. J., & Wright, P. E. (2002) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(02)00289-0 · Cited by 1,327
Complete Structure of the 11-Subunit Bovine Mitochondrial Cytochrome bc 1 Complex
Iwata, S., Lee, J. W., Okada, K., Lee, J. K., Iwata, M., Rasmussen, B., Link, T. A., Ramaswamy, S., & Jap, B. K. (1998) · Science · doi:10.1126/science.281.5373.64 · Cited by 1,253
Jeffery, C. J. (1999) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(98)01335-8 · Cited by 1,084
Yamamoto, K., Ichijo, H., & Korsmeyer, S. J. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.12.8469 · Cited by 1,003
Deininger, P. L. (1991) · Analytical Biochemistry · doi:10.1016/0003-2697(91)90283-y · Cited by 894
Intrinsic protein disorder in complete genomes.
Dunker, A. K., Zoran Obradovic, A., Romero, P. R., Garner, E. C., & Brown, C. J. (2000) · PubMed · Cited by 661
Self-citationImplications of macromolecular crowding for protein assembly
Minton, A. P. (2000) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(99)00045-7 · Cited by 649
Evolutionary Rate Heterogeneity in Proteins with Long Disordered Regions
Brown, C. J., Takayama, S., Campen, A., Vise, P., Marshall, T. W., Oldfield, C., Williams, C. J., & Dunker, A. (2002) · Journal of Molecular Evolution · doi:10.1007/s00239-001-2309-6 · Cited by 441
Self-citationStructure of Human Des(1-45) Factor Xa at 2·2 Å Resolution
Padmanabhan, K., Padmanabhan, K., Tulinsky, A., Park, C. H., Bode, W., Huber, R., Blankenship, D. T., Cardin, A. D., & Kisiel, W. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1441 · Cited by 391
Of urfs and orfs : a primer on how to analyze devised amino acid sequences
Doolittle, R. F. (1986) · University Science Books · Cited by 357
Higashiyama, S., Lau, K., Besner, G. E., Abraham, J. A., & Klagsbrun, M. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)42682-8 · Cited by 349
Gorman, M. A., Moréra, S., Rothwell, D. G., Fortelle, E. D. L., Mol, C. D., Tainer, J. A., Hickson, I. D., & Freemont, P. S. (1997) · The EMBO Journal · doi:10.1093/emboj/16.21.6548 · Cited by 322
The Crystal Structure of the DNA-Binding Domain of Yeast RAP1 in Complex with Telomeric DNA
König, P., Giraldo, R., Chapman, L., & Rhodes, D. (1996) · Cell · doi:10.1016/s0092-8674(00)81088-0 · Cited by 308
X-ray Structure of Active Site-inhibited Clotting Factor Xa
Brandstetter, H., Kühne, A., Bode, W., Huber, R., von der Saal, W., Wirthensohn, K., & Engh, R. A. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.47.29988 · Cited by 279
Clackson, T., Ultsch, M. H., Wells, J. A., & de Vos, A. M. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1669 · Cited by 277
Trombitás, K., Greaser, M. L., Labeit, S., Jin, J., Kellermayer, M., Helmes, M., & Granzier, H. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.140.4.853 · Cited by 239
Engel, J., Taylor, W. F., Paulsson, M., Sage, H., & Hogan, B. L. M. (1987) · Biochemistry · doi:10.1021/bi00396a015 · Cited by 212
Protein motifs that recognize structural features of DNA
Churchill, M. E. A., & TRAVERS, A. A. (1991) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(91)90040-3 · Cited by 199
Probing the conformational state of apomyoglobin by limited proteolysis 1 1Edited by P. E. Wright
Fontana, A., Zambonin, M., de Laureto, P. P., Filippis, V. D., Clementi, A., & Scaramella, E. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1996.0787 · Cited by 194
Goldgur, Y., Mosyak, L., Reshetnikova, L. S., Ankilova, V. N., Lavrik, O. I., Khodyreva, S. N., & Safro, M. G. (1997) · Structure · doi:10.1016/s0969-2126(97)00166-4 · Cited by 193
Roles of partly unfolded conformations in macromolecular self‐assembly
Namba, K. (2001) · Genes to Cells · doi:10.1046/j.1365-2443.2001.00384.x · Cited by 167
Baskakov, I. V., Kumar, P., Srinivasan, G., Ji, Y., Bolen, D. W., & Thompson, E. B. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.16.10693 · Cited by 163
The Conformation of Horse Heart Apocytochrome c
Stellwagen, E., Rysavy, R., & Babul, G. (1972) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(20)81811-0 · Cited by 161
Schmitz, M. L., Silva, M. A. D. S., Altmann, H., Czisch, M., Holak, T. A., & Baeuerle, P. A. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)47294-8 · Cited by 159
X-ray Crystal Structure of Human Dopamine Sulfotransferase, SULT1A3
Dajani, R., Cleasby, A., Neu, M., Wonacott, A. J., Jhoti, H., Hood, A. M., Modi, S. P., Hersey, A., Taskinen, J., Cooke, R. M., et al. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.53.37862 · Cited by 158
The Conformation of Histone H5
Avilés, F. X., Chapman, G. E., Kneale, G. G., Crane‐Robinson, C., & Bradbury, E. M. (1978) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1978.tb12457.x · Cited by 152
Laurberg, M., Kristensen, O., Martemyanov, K. A., Gudkov, A. T., Нагаев, И. Ю., Hughes, D., & Liljas, A. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4168 · Cited by 141
Terminal regions of flagellin are disordered in solution
Vonderviszt, F., Kanto, S., Aizawa, S.-I., & Namba, K. (1989) · Journal of Molecular Biology · doi:10.1016/0022-2836(89)90176-9 · Cited by 137
Chakravarthy, B., Morley, P., & Whitfield, J. (1999) · Trends in Neurosciences · doi:10.1016/s0166-2236(98)01288-0 · Cited by 135
Eketjäll, S., Fainzilber, M., Murray‐Rust, J., & Ibáñez, C. F. (1999) · The EMBO Journal · doi:10.1093/emboj/18.21.5901 · Cited by 129
NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein
Penkett, C. J., Redfield, C., Dodd, I. B., Hubbard, J., McBay, D. L., Mossakowska, D. E., Smith, R. A., Dobson, C. M., & Smith, L. J. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1369 · Cited by 125
Crystal structure of glycyl‐tRNA synthetase from Thermus thermophilus.
Logan, D. T., Mazauric, M., Kern, D., & Moras, D. (1995) · The EMBO Journal · doi:10.1002/j.1460-2075.1995.tb00089.x · Cited by 122
Crystal structure of human catecholamine sulfotransferase 1 1Edited by R. Huber
Bidwell, L. M., McManus, M. E., Gaedigk, A., Kakuta, Y., Negishi, M., Pedersen, L. C., & Martin, J. L. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.3153 · Cited by 116
Structure of tomato bushy stunt virus
Hopper, P., Harrison, S. C., & Sauer, R. T. (1984) · Journal of Molecular Biology · doi:10.1016/0022-2836(84)90045-7 · Cited by 112
Holliger, P., Riechmann, L., & Williams, R. L. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2720 · Cited by 106
Crystal Structure of the Complex of Diphtheria Toxin with an Extracellular Fragment of Its Receptor
Louie, G. V., Yang, W., Bowman, M. E., & Choe, S. (1997) · Molecular Cell · doi:10.1016/s1097-2765(00)80008-8 · Cited by 102
Geyer, M., Munte, C. E., Schorr, J., Kellner, R., & Kalbitzer, H. R. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2740 · Cited by 101
Jacobs, D. M., Lipton, A. S., Isern, N., Daughdrill, G. W., Lowry, D. F., Gomes, X. V., & Wold, M. S. (1999) · Journal of Biomolecular NMR · doi:10.1023/a:1008373009786 · Cited by 100
Conformational Changes in the Fibronectin Binding MSCRAMMs Are Induced by Ligand Binding
House‐Pompeo, K., Xu, Y., Joh, D., Speziale, P., & Höök, M. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.3.1379 · Cited by 99
Cary, P. D., KING, D. S., Crane‐Robinson, C., Bradbury, E. M., Rabbani, A., Goodwin, G. H., & Johns, E. W. (1980) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1980.tb06123.x · Cited by 99
High Resolution NMR Solution Structure of the Leucine Zipper Domain of the c-Jun Homodimer
Junius, F. K., O’Donoghue, S. I., Nilges, M., Weiss, A. S., & King, G. F. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.23.13663 · Cited by 97
Gutierrez-Cruz, G., van Heerden, A., & Wang, K. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m008851200 · Cited by 95
Donaldson, L. W., & Capone, J. P. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)45957-1 · Cited by 94
ABERCROMBIE, B. D., Kneale, G. G., Crane‐Robinson, C., Bradbury, E. M., Goodwin, G. H., WALKER, J. M., & Johns, E. W. (1978) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1978.tb12154.x · Cited by 91
Hershey, P. E. C., McWhirter, S. M., Gross, J. D., Wagner, G., Alber, T., & Sachs, A. B. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.30.21297 · Cited by 90
Mogridge, J., Legault, P., Li, J., Oene, M. D. V., Kay, L. E., & Greenblatt, J. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80027-1 · Cited by 88
NMR analysis of the structure of synaptobrevin and of its interaction with syntaxin
Hazzard, J. T., Südhof, T. C., & Rizo, J. (1999) · Journal of Biomolecular NMR · doi:10.1023/a:1008382027065 · Cited by 86
The C-terminal domain of Saccharomyces cerevisiae DNA topoisomerase II.
Caron, P. R., Watt, P. M., & Wang, J. C. (1994) · Molecular and Cellular Biology · doi:10.1128/mcb.14.5.3197 · Cited by 86
Josefsson, E., O'Connell, D. W., Foster, T. J., Durussel, I., & Cox, J. A. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.47.31145 · Cited by 78
Tucker, P. A., Tsernoglou, D., Tucker, A. D., Coenjaerts, F. E. J., Leenders, H. J., & van der Vliet, P. C. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06598.x · Cited by 76
Intrinsic structural disorder and sequence features of the cell cycle inhibitor p57Kip2
Adkins, J., & Lumb, K. J. (2001) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.10018 · Cited by 75
Aizawa, S.-I., Vonderviszt, F., Ishima, R., & Akasaka, K. (1990) · Journal of Molecular Biology · doi:10.1016/0022-2836(90)90064-s · Cited by 72
Nusspaumer, G., Remacha, M., & Ballesta, J. P. G. (2000) · The EMBO Journal · doi:10.1093/emboj/19.22.6075 · Cited by 69
Bergel, M., Herrera, J. E., Thatcher, B. J., Prymakowska-Bosak, M., Vassilev, A. P., Nakatani, Y., Martin, B., & Bustin, M. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.15.11514 · Cited by 66
Conformation of bovine myelin basic protein purified with bound lipids
Polverini, E., Fasano, A., Zito, F. A., Riccio, P., & CAVATORTA, P. (1999) · European Biophysics Journal · doi:10.1007/s002490050218 · Cited by 66
High-resolution solution structure of the retinoid X receptor DNA-binding domain
Holmbeck, S. M. A., Foster, M. P., Casimiro, D. R., Sem, D. S., Dyson, H. J., & Wright, P. E. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1908 · Cited by 64
Arnez, J. G., Dock‐Brégeon, A., & Moras, D. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2562 · Cited by 62
Mimori‐Kiyosue, Y., Vonderviszt, F., & Namba, K. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1111 · Cited by 56
Cho, H. S., Liu, C. W., Damberger, F. F., Pelton, J. G., Nelson, H. C. M., & Wemmer, D. E. (1996) · Protein Science · doi:10.1002/pro.5560050210 · Cited by 56
The refinement of southern bean mosaic virus in reciprocal space
Silva, A. M., & Rossmann, M. G. (1985) · Acta Crystallographica Section B Structural Science · doi:10.1107/s0108768185001781 · Cited by 51
Hayes, S., & O'Hare, P. (1993) · Journal of Virology · doi:10.1128/jvi.67.2.852-862.1993 · Cited by 50
Huang, Y., Komoto, J., Konishi, K., Takata, Y., Ogawa, H., Gomi, T., Fujioka, M., & Takusagawa, F. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3637 · Cited by 49
Structural and functional characterization of the HPV16 E7 protein expressed in bacteria.
Pahel, G. L., AULABAUGH, A. E., Short, S. A., Barnes, J. A., Painter, G. R., Ray, P. H., & Phelps, W. C. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)74487-1 · Cited by 43
Wissmann, R., Baukrowitz, T., Kalbacher, H., Kalbitzer, H., Ruppersberg, J., Pongs, O., Antz, C., & Fakler, B. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.50.35521 · Cited by 41
Comparing predictors of disordered protein.
Li, X., Zoran Obradovic, A., Brown, C. J., Garner, E. C., & Dunker, A. K. (2000) · PubMed · Cited by 39
Self-citationIntelligent Data Analysis for Protein Disorder Prediction
Romero, P. R., Zoran Obradovic, A., & Dunker, A. K. (2000) · Artificial Intelligence Review · doi:10.1023/a:1006678623815 · Cited by 38
Self-citationA folding transition and novel zinc finger accessory domain in the transcription factor ADR1.
Klevit, R. E., Bowers, P. M., & Schaufler, L. E. (1999) · Nature Structural Biology · doi:10.1038/8283 · Cited by 38
Mimori‐Kiyosue, Y., Yamashita, I., Fujiyoshi, Y., Yamaguchi, S., & Namba, K. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.2184 · Cited by 38
Tell, G., Perrone, L., Fabbro, D., Pellizzari, L., Pucillo, C. E. M., Felice, M. D., Acquaviva, R., Formisano, S., & Damante, G. (1998) · Biochemical Journal · doi:10.1042/bj3290395 · Cited by 38
Zhang, M., Vogel, H. J., & Zwiers, H. (1994) · Biochemistry and Cell Biology · doi:10.1139/o94-017 · Cited by 32
Cánaves, J. M., & Montal, M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.51.34214 · Cited by 30
Martemyanov, K. A., & Gudkov, A. T. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m002656200 · Cited by 27
Dimerization and DNA Binding Facilitate aaa-Helix Formation of Max in Solution
Horiuchi, M., Kurihara, Y., Katahira, M., Maeda, T., Saito, T., & Uesugi, S. (1997) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a021813 · Cited by 26
Domain Mapping of Human Apurinic/Apyrimidinic Endonuclease
Strauss, P. R., & Holt, C. M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.23.14435 · Cited by 25
Origin of the Napoleon's hat nebula around SN1987A and implications for the progenitor
Podsiadlowski, P., Fabian, A. C., & Stevens, I. R. (1991) · Nature · doi:10.1038/354043a0 · Cited by 25
Nilsson, N., Malmborg, A., & Borrebaeck, C. A. K. (2000) · Journal of Virology · doi:10.1128/jvi.74.9.4229-4235.2000 · Cited by 25
Dekker, J., Kanellopoulos, P. N., van Oosterhout, J. A. W. M., Stier, G., Tucker, P. A., & van der Vliet, P. C. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1652 · Cited by 23
Crystallization of the globular domain of histone H5
Graziano, V., Gerchman, S. E., Wonacott, A. J., Sweet, R. M., Wells, J. R. E., White, S. W., & Ramakrishnan, V. (1990) · Journal of Molecular Biology · doi:10.1016/0022-2836(90)90122-3 · Cited by 23
van Breukelen, B., Kanellopoulos, P. N., Tucker, P. A., & van der Vliet, P. C. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m005745200 · Cited by 17
Yazawa, M., Matsuzawa, F., & Yagi, K. (1990) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a123040 · Cited by 15
Shaiu, W.-L., Tao, H., & Hsieh, T. S. (1998) · Pacific Symposium on Biocomputing (PSB) · doi:10.1142/9789814447300_0057 · Cited by 15
Martinson, J. (1962) · Science · doi:10.1126/science.137.3533.900-a · Cited by 10
The Basic Subdomain of the c-Jun Oncoprotein. A Joint CD, Fourier-Transform Infrared and NMR Study
Krebs, D., Dahmani, B., Antri, S. E., Monnot, M., Convert, O., Mauffret, O., Troalen, F., & Fermandjian, S. (1995) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1995.tb20709.x · Cited by 10
Purification of histone core octamers and 2.15 Å X-ray analysis of crystals in KCl/phosphate
Lambert, S. J., Nicholson, J. M., Chantalat, L., Reid, A. J., Donovan, M. J., & Baldwin, J. P. (1999) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444999001912 · Cited by 9
Martinson, J. (1962) · Science · doi:10.1126/science.137.3533.900 · Cited by 7
Quality of the electron density map
Silva, A. B., Rossmann, M. G., Abad‐Zapatero, C., & Huber, R. (1983) · Journal of Molecular Biology · doi:10.1016/s0022-2836(83)80051-5 · Cited by 3
Flagged first, then by citations
Research works printed but not linked: 133
- Sigler P. B., 1988, Nature 333, 210−212
- Frankel A. D., 1991, Cell 65, 717−719
- Romero P., 1997, IEEE Intl. Conf. Neural Networks 1, 90−95
- Li X., 1999, Gen. Inform., 10, 40
- Romero P., 2001, Funct., Gen. 42, 38−48.
- Vucetic S., 2001, Intl
- Romero P., 1998, PSB 1998 3, 437−448
- Romero P., 1997, Gen. Inform. 8, 110−124
- Li X., 2000, Gen. Inform. 11, 172−184
- Dunker A. K., 2000, Gen. Inform. 11, 161−171
- Dunker A. K., 2001, Nat. Biotech. 19, 805−806
- Karush F., 1950, J. Am. Chem. Soc., 72
- Meador W. E., 1992, Science 257, 1251−1255
- Choo Y., 1998, Nat. Struct. Biol. 5, 253−255
- Morar A. S., 2001, Biochemistry 40, 281−285
- Flaugh S. L., 2001, Biomacromolecules 2, 538−540
- Zurdo J., 1997, Biochemistry 36, 9625−9635
- Zurdo J., 2000, Biochemistry 39, 8935−8943
- Johansson J., 1998, J. Biol. Chem., 273
- Mogridge J., 1998, Mol. Cell 1, 265−275
- Legault P., 1998, Cell 93, 289−299
- Mol C. D., 2000, Nature 403, 451−456
- Chang J. F., 1999, J. Mol. Biol., 288
- Yamamoto K., 1999, Mol. Cell. Biol. 19, 8469−8478
- Cheng E. H., 1997, Science 278
- Chang B. S., 1997, EMBO J., 16
- Clem R. J., 1998, Proc. Natl. Acad. Sci. U.S.A. 95, 554−559
- Rodi D. J., 1999, J. Mol. Biol., 285
- Rodi D. J., 1999, Pacific Symp. Biocomputing 4, 532−541
- Fang G., 1998, Cancer Res. 58, 3202−3208
- Kissinger C. R., 1995, Nature 378, 641−644
- Yang S. A., 2000, Biochemistry 39, 16147−16154
- Bhattacharyya J., 1999, J. Biol. Chem., 274
- Ostedgaard L. S., 2000, Proc. Natl. Acad. Sci. U.S.A. 97, 5657−5662
- Lapthorn A. J., 1994, Nature 369, 455−461
- Wu H., 1994, Structure 2, 545−558
- Bailey R. W., 2001, Biochemistry 40, 11828−11840
- Brandstetter H., 1995, Proc. Natl. Acad. Sci. U.S.A. 92, 9796−9800
- Thomas J., 1991, J. Biol. Chem., 266
- Knighton D. R., 1991, Science 253, 414−420
- Kriwacki R. W., 1996, Proc. Natl. Acad. Sci. U.S.A. 93, 11504−11509
- Russo A. A., 1996, Nature 382, 325−331
- Evarsson A., 1994, EMBO J., 13
- Eom J., 1996, Plant Sci., 115, 24
- Ghosh D., 1995, Structure 3, 503−513
- Penkett C. J., 1998, Biochemistry 37, 17054−17067
- Penkett C. J., 2000, Biochemistry 39, 2887−2893
- Samatey F. A., 2001, Nature 410, 331−337
- Daughdrill G. W., 1997, Nat. Struct. Biol. 4, 285−291
- Daughdrill G. W., 1998, Biochemistry 37, 1076−1082
- Fletcher C. M., 1998, Biochemistry, 37, 15
- Fletcher C. M., 1998, Protein Sci. 7, 1639−1642
- Gingras A. C., 1999, Genes Dev. 13, 1422−1437
- Eigenbrot C., 1997, Nat. Struct. Biol. 4, 435−438
- Clackson T., 1995, Science 267, 383−386
- Holliger P., 1997, Structure 5, 265−275
- Coleman D. E., 1994, Science 265, 1405−1412
- Coleman D. E., 1999, J. Biol. Chem., 274
- Cary P. D., 1980, Eur. J. Biochem., 112
- Louie D. F., 2000, Protein Sci. 9, 170−179
- Huth J. R., 1997, Nat. Struct. Biol. 4, 657−665
- Pierantoni G. M., 2001, Oncogene 20, 6132−6141
- Munshi N., 2001, Science 293, 1133−1136
- Cary P. D., 1981, Eur. J. Biochem., 119
- Nakayama J., 2001, Science 292, 110−113
- Ramakrishnan V., 1993, Nature 362, 219−223
- Focia P. J., 1998, Biochemistry 37, 15066−15075
- Love J. J., 1995, Nature 376, 791−795
- Lee C. H., 1996, Cell 85, 931−942
- Arold S., 1997, Structure 5, 1361−1372
- Arold S. T., 2001, Trends Biochem. Sci. 26, 356−363
- Berkovits H. J., 1999, Biochemistry 38, 16826−168230
- Brown H. G., 1997, Biochemistry 36, 15035−15040
- Hoh J. H., 1998, Proteins 32, 223−228
- Zhang M., 1994, Biochem. Cell Biol. 72, 109−116
- Grishin N. V., 1999, Biochemistry 38, 15174−15184
- Mosyak L., 1995, Nat. Struct. Biol. 2, 537−547
- Rao V. D., 1998, Cell 94, 829−839
- Grobler J. A., 1996, Nat. Struct. Biol. 3, 788−795
- Essen L. O., 1996, Nature 380, 595−602
- Lopez Garcia F., 2000, Proc. Natl. Acad. Sci. U.S.A. 97, 8334−8339
- Gatewood J. M., 1990, J. Biol. Chem., 265
- Gast K., 1995, Biochemistry 34, 13211−13218
- McEwan I. J., 1996, Biochemistry 35, 9584−93
- Gong W., 1997, Nucleic Acids Res. 25, 2702−2715
- Ban N., 1999, Nature 400, 841−847
- Tesmer J. J., 1997, Cell 89, 251−261
- Moy F. J., 2000, Biochemistry 39, 7063−7073
- Chatterjee T. K., 2000, J. Biol. Chem., 275
- Choi H. K., 1996, J. Mol. Biol., 262
- Kim K. K., 1998, Nature 394, 595−599
- Kim R., 1998, Proc. Natl. Acad. Sci. U.S.A. 95, 9129−9133
- Fasshauer D., 1997, J. Biol. Chem., 272
- Fasshauer D., 1997, J. Biol. Chem., 272
- Fasshauer D., 1998, Biochemistry 37, 10354−10362
- Sutton R. B., 1998, Nature 395, 347−353
- Weinreb P. H., 1996, Biochemistry 35, 13709−13715
- Nielsen M. S., 2001, J. Biol. Chem., 18, 18
- Labeit S., 1995, Science 270, 293−296
- Kellermayer M. S. Z., 1997, Science 276, 1112−1116
- Helmes M., 1999, Circ. Res. 84, 1339−1352
- Stewart L., 1996, J. Biol. Chem., 271
- Shaiu W. L., 1999, Pacific Symp. Biocomput. 4, 578−589
- Berger J. M., 1996, Nature 379, 225−232
- Caron P. R., 1994, Mol. Cell Biol. 14, 3197−3207
- Parraga G., 1988, Science 241, 1489−1492
- Klevit R. E., 1990, Proteins 7, 215−226
- Hyre D. E., 1998, J. Mol. Biol., 279
- Bowers P. M., 1999, Nat. Struct. Biol. 6, 478−485
- Campbell K. M., 2000, Biochemistry 39, 2708−2713
- John M., 1996, Pept. Res., 9, 78
- Glover J. N., 1995, Nature 373, 257−61
- Chen L., 1998, Nature, 392, 48
- Richards J. P., 1996, J. Biol. Chem., 271
- Liu D., 1998, Cell 94, 573−583
- Weiss M. A., 1990, Nature 347, 575−578
- Chang J., 1995, J. Biol. Chem., 270
- Kussie P. H., 1996, Science 274, 948−953
- Shen F., 1996, J. Biol. Chem., 271
- Uesugi M., 1997, Science 277, 1310−1313
- Liu Y., 1999, Genes Dev. 13, 1692−1703
- O'Hare P., 1992, Biochemistry 31, 4150−4156
- Wilmanns M., 1995, Proc. Natl. Acad. Sci. U.S.A. 92, 11955−11959
- Abramson J., 2000, Nat. Struct. Biol. 7, 910−917
- Iakoucheva L. M., 2001, Protein Sci. 10, 560−571
- Schulz G. E., 1979, Molecular Mechanism of Biological Recognition
- Meador W. E., 1993, Science 262, 1718−1721
- Pontius B. W., 1993, Trends Biochem. Sci. 18, 181−186
- Pappu R. V., 2000, Proc. Natl. Acad. Sci. U.S.A. 97, 12565−12570
- Fontana A., 1997, R17−R26.
- Hubbard S. J., 1994, Protein Sci. 3, 757−768
- Ban N., 2000, Science 289, 905−920
- Treiber D. K., 2001, Curr. Opin. Struct. Biol. 11, 309−314
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“jpg" NDATA ITEM> ]> The occurrence of unstructured regions of significant size (>50 residues) is surprisingly common in functional protein”
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Classification of Intrinsically Disordered Regions and Proteins
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“com nition; second, molecular assembly; third, protein modification; fourth, entropic chain activities [33].”
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Peng, K., Predrag Radivojac, A., Vučetić, S., Dunker, A. K., & Zoran Obradovic, A. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-208 · Cited by 940
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“They include: PONDR (Romero et al., 1997; Dunker et al., 2002, http://www.disprot. org), NORSP (Liu and Rost, 2003, http://cubic.bioc.columbia.edu/ services/NORSp), DisEMBL™(Linding et al., 2003a, http://dis.”
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Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
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Self-citationCoupled Folding and Binding with α-Helix-Forming Molecular Recognition Elements
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Self-citationUnfolded Proteins and Protein Folding Studied by NMR
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Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
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Self-citationIdentification, analysis, and prediction of protein ubiquitination sites
Predrag Radivojac, A., Vacic, V., Haynes, C. A., Cocklin, R., Mohan, A., Heyen, J. W., Goebl, M. G., & Iakoucheva, L. M. (2009) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.22555 · Cited by 588
Self-citationIntrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes
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Self-citationUnusual biophysics of intrinsically disordered proteins
Uversky, V. N. (2012) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2012.12.008 · Cited by 581
Neuropathology, biochemistry, and biophysics of α‐synuclein aggregation
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“…numerous biological functions despite the lack of unique structure (Wright and Dyson 1999; Uversky et al. 2000, 2005a; Dunker and Obradovic 2001; Dunker et al. 2001, 2002a,b, 2005; Tompa 2002, 2005; Uversky 2002a,b, 2003; Tompa and Csermely 2004; Daughdrill et al. 2005; Dyson and Wright 2005;…”
BackgroundWhat Macromolecular Crowding Can Do to a Protein
Kuznetsova, I. М., Константинович, Т. К., & Uversky, V. N. (2014) · International Journal of Molecular Sciences · doi:10.3390/ijms151223090 · Cited by 574
Net charge per residue modulates conformational ensembles of intrinsically disordered proteins
Mao, A. H., Crick, S. L., Vitalis, A., Chicoine, C. L., & Pappu, R. V. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0911107107 · Cited by 555
Xue, B., Dunker, A. K., & Uversky, V. N. (2012) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2012.675145 · Cited by 557
Self-citationXie, H. M., Vučetić, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Uversky, V. N., & Zoran Obradovic, A. (2007) · Journal of Proteome Research · doi:10.1021/pr060392u · Cited by 572
Self-citationThe role of structural disorder in the function of RNA and protein chaperones
Tompa, P., & Csermely, P. (2004) · The FASEB Journal · doi:10.1096/fj.04-1584rev · Cited by 555
Exploiting heterogeneous sequence properties improves prediction of protein disorder
Zoran Obradovic, A., Peng, K., Vučetić, S., Predrag Radivojac, A., & Dunker, A. K. (2005) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.20735 · Cited by 554
Self-citationIntrinsically Disordered Proteins and Their “Mysterious” (Meta)Physics
Uversky, V. N. (2019) · Frontiers in Physics · doi:10.3389/fphy.2019.00010 · Cited by 542
“Consequently, the list of experimentally validated IDPs was extended first to 157 proteins [41] and later to more than 200 proteins containing at least one IDPR of 30 consecutive residues or longer [7, 29, 30].”
BackgroundThe SARS coronavirus nucleocapsid protein – Forms and functions
Chang, C., Hou, M., Chang, C., Hsiao, C., & Huang, T.-H. (2014) · Antiviral Research · doi:10.1016/j.antiviral.2013.12.009 · Cited by 522
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
Fuxreiter, M., Simon, I., Friedrich, P., & Tompa, P. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.03.017 · Cited by 518
Maiti, N. C., Apetri, M. M., Zagorski, M. G., CAREY, P. R., & Anderson, V. E. (2004) · Journal of the American Chemical Society · doi:10.1021/ja0356176 · Cited by 523
Physicochemical Properties of Cells and Their Effects on Intrinsically Disordered Proteins (IDPs)
Theillet, F., Binolfi, A., Frembgen-Kesner, T., Hingorani, K. S., Sarkar, M., Kyne, C., Li, C., Crowley, P. B., Gierasch, L. M., Pielak, G. J., et al. (2014) · Chemical Reviews · doi:10.1021/cr400695p · Cited by 518
A decade and a half of protein intrinsic disorder: Biology still waits for physics
Uversky, V. N. (2013) · Protein Science · doi:10.1002/pro.2261 · Cited by 511
Uversky, V. N. (2003) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2003.10506918 · Cited by 514
OPTIMIZING LONG INTRINSIC DISORDER PREDICTORS WITH PROTEIN EVOLUTIONARY INFORMATION
PENG, K., Vučetić, S., Predrag Radivojac, A., Brown, C. J., Dunker, A. K., & Zoran Obradovic, A. (2005) · Journal of Bioinformatics and Computational Biology · doi:10.1142/s0219720005000886 · Cited by 499
Self-citationRomero, P. R., Zaidi, S., Fang, Y. Y., Uversky, V. N., Radivojac, P., Oldfield, C. J., Cortese, M. S., Sickmeier, M., LeGall, T., Obradovic, Z., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507916103 · Cited by 480
Self-citationStructural disorder throws new light on moonlighting
Tompa, P., Szász, C., & Buday, L. (2005) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2005.07.008 · Cited by 468
“This chloride channel, which is involved in cystic fibrosis, is blocked and inhibited when its disordered regulatory domain R is dephosphorylated [ 9 ].”
BackgroundMethodInfluentialProbing protein structure by limited proteolysis.
Fontana, A., de Laureto, P. P., Spolaore, B., Frare, E., Picotti, P., & Zambonin, M. (2004) · Acta Biochimica Polonica · doi:10.18388/abp.2004_3573 · Cited by 476
Predicting intrinsic disorder from amino acid sequence
Zoran Obradovic, A., Peng, K., Vučetić, S., Predrag Radivojac, A., Brown, C. J., & Dunker, A. K. (2003) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.10532 · Cited by 455
Self-citationGnad, F., Ren, S., Cox, J., Olsen, J. V., Maček, B., Oroshi, M., & Mann, M. (2007) · Genome biology · doi:10.1186/gb-2007-8-11-r250 · Cited by 454
Assessing protein disorder and induced folding
Receveur‐Brechot, V., Bourhis, J., Uversky, V. N., Canard, B., & Longhi, S. (2005) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.20750 · Cited by 458
Intrinsically disordered proteins from A to Z
Uversky, V. N. (2011) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2011.04.001 · Cited by 434
Bernadó, P., Blanchard, L., Timmins, P. A., Marion, D., Ruigrok, R. W. H., & Blackledge, M. J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506202102 · Cited by 436
Predicting intrinsic disorder in proteins: an overview
He, B., Wang, K., Liu, Y., Xue, B., Uversky, V. N., & Dunker, A. K. (2009) · Cell Research · doi:10.1038/cr.2009.87 · Cited by 426
Self-citationTOP-IDP-Scale: A New Amino Acid Scale Measuring Propensity for Intrinsic Disorder
Campen, A., Williams, R. M., Brown, C. J., Meng, J., Uversky, V. N., & Dunker, A. K. (2008) · Protein and Peptide Letters · doi:10.2174/092986608785849164 · Cited by 422
Self-citationPOPP the question: what do LEA proteins do?
Wise, M. J., & Tunnacliffe, A. (2003) · Trends in Plant Science · doi:10.1016/j.tplants.2003.10.012 · Cited by 418
Butkinaree, C., Park, K., & Hart, G. W. (2009) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2009.07.018 · Cited by 430
Relating sequence encoded information to form and function of intrinsically disordered proteins
Das, R. K., Ruff, K. M., & Pappu, R. V. (2015) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2015.03.008 · Cited by 410
Identification and functions of usefully disordered proteins
Dunker, A. K., Brown, C. J., & Zoran Obradovic, A. (2002) · Advances in protein chemistry · doi:10.1016/s0065-3233(02)62004-2 · Cited by 410
“We have carefully studied the literature of more than 90 example proteins selected from our disordered protein databases and found reports on the functions most of the disordered regions (Dunker et al., 2002).”
BackgroundSelf-citationLocal structural disorder imparts plasticity on linear motifs
Fuxreiter, M., Tompa, P., & Simon, I. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm035 · Cited by 405
Filming Biomolecular Processes by High-Speed Atomic Force Microscopy
Ando, T., Uchihashi, T., & Scheuring, S. (2014) · Chemical Reviews · doi:10.1021/cr4003837 · Cited by 408
Recent atomic models of amyloid fibril structure
Nelson, R. A., & Eisenberg, D. S. (2006) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2006.03.007 · Cited by 393
“Natively disordered models Certain proteins, or segments of proteins, are poorly ordered in their native states [17].”
BackgroundTreeck, M., Sanders, J. L., Elias, J. E., & Boothroyd, J. C. (2011) · Cell Host & Microbe · doi:10.1016/j.chom.2011.09.004 · Cited by 374
“As observed in other organisms (Dunker et al., 2002; Huttlin et al., 2010; Iakoucheva et al., 2004; Jimenez et al., 2007), we found phosphorylation sites are preferentially found in regions of disorder and, to a lesser degree, appear somewhat enriched in secondary structures classified as coils (Figure 1E).”
BackgroundLinding, R., Schymkowitz, J. W. H., Rousseau, F., Diella, F., & Serrano, L. G. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.06.088 · Cited by 386
Vučetić, S., Brown, C. J., Dunker, A. K., & Zoran Obradovic, A. (2003) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.10437 · Cited by 381
Self-citationPeng, Z., Yan, J. R., Fan, X., Mizianty, M. J., Xue, B., Wang, K., Hu, G., Uversky, V. N., & Kurgan, L. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1661-9 · Cited by 389
Xie, H. M., Vučetić, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Zoran Obradovic, A., & Uversky, V. N. (2007) · Journal of Proteome Research · doi:10.1021/pr060394e · Cited by 394
Self-citationEkman, D. S., Light, S., Björklund, Å. K., & Elofsson, A. (2006) · Genome biology · doi:10.1186/gb-2006-7-6-r45 · Cited by 378
Borcherds, W. M., Bremer, A., Borgia, M. B., & Mittag, T. (2020) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2020.09.004 · Cited by 358
“IDRs often harbor many post-translation modification (PTM) sites because they are accessible for modifying enzymes, offering a mechanism for biology to regulate phase behavior [32-34].”
BackgroundOzenne, V., Bauer, F., Salmon, L., Huang, J., Jensen, M. R., Segard, S., Bernadó, P., Charavay, C., & Blackledge, M. J. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts172 · Cited by 356
Uversky, V. N. (2009) · The Protein Journal · doi:10.1007/s10930-009-9201-4 · Cited by 367
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Metadata
- Authors
- Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., & Obradović, Z.
- Affiliations
- Washington State University (US)
- School of Molecular Biosciences, Washington State University, Pullman, Washington 99164 and Center for Information Science and Technology, Temple University, Philadelphia, Pennsylvania 19122
- Corresponding author
- Dunker, A. Keith
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2002-05-01
- Volume
- 41
- Issue
- 21
- Pages
- 6573-6582
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- OpenAlex
- W2073745520
- Cited by
- 1,731
- References
- 89
- Citations by year
- 2026: 16 · 2025: 33 · 2024: 40 · 2023: 39 · 2022: 64 · 2021: 52 · 2020: 70 · 2019: 71 · 2018: 60 · 2017: 69 · 2016: 89 · 2015: 78 · 2014: 97 · 2013: 96 · 2012: 109
- FWCI
- 25.50
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. National Library of Medicine (1R01-LM06916, R01LM006916)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Interaction Studies and Fluorescence Analysis
- Keywords
- intrinsic disorder, protein function, random coil, molten globule, protein structure-function relationship, native proteins, limited proteolysis, circular dichroism, nuclear magnetic resonance
- MeSH terms
- Apoproteins, Cytochrome c Group, DNA Helicases, Glycoproteins, Proteins, Structure-Activity Relationship, Molecular Structure, Protein Folding, Molecular Chaperones, Computational Biology, Cytochromes c, Clusterin
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