Histone modifications at human enhancers reflect global cell-type-specific gene expression
Heintzman, Nathaniel D., Hon, Gary C., Hawkins, R. David, Kheradpour, Pouya, Stark, Alexander, Harp, Lindsey F., Ye, Zhen, Lee, Leonard K., Stuart, Rhona K., Ching, Christina W., Ching, Keith A., Antosiewicz-Bourget, Jessica E., Liu, Hui, Zhang, Xinmin, Green, Roland D., Lobanenkov, Victor V., Stewart, Ron, Thomson, James A., Crawford, Gregory E., Kellis, Manolis, Ren, Bing·2009·Nature
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Items 401–500 of 1,009
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- Long-range enhancers regulating Myc expression are required for normal facial morphogenesisVeli Vural Uslu, M. Petretich, Sandra Ruf, Katja Langenfeld, Nuno A. Fonseca, John C. Marioni, François Spitz · 2014 · Nature Genetics
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- Promoter or enhancer, what’s the difference? Deconstruction of established distinctions and presentation of a unifying modelAndersson, Robin · 2015 · BioEssays
- DNA methylation and chromatin accessibility profiling of mouse and human fetal germ cellsHongshan Guo, Boqiang Hu, Liying Yan, Jun Yong, Yan Wu, Yun Gao, Fan Guo, Yu Hou, Xiaoying Fan, Ji Dong et al. · 2016 · Cell Research
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- An Epigenetic Role of Mitochondria in CancerYue Liu, Chao Chen, Xinye Wang, Yihong Sun, Jin Zhang, Juxiang Chen, Yufeng Shi · 2022 · Cells
- Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limbJustin L. Cotney, Jing Leng, Sunghee Oh, Laura E. DeMare, Steven K. Reilly, Mark Gerstein, James P. Noonan · 2012 · Genome Research
- QDMR: a quantitative method for identification of differentially methylated regions by entropyYan Zhang, Hongbo Liu, Jie Lv, Xue Xiao, Jiang Zhu, Xiaojuan Liu, Jianzhong Su, Xia Li, Qiong Wu, Fang Wang et al. · 2011 · Nucleic Acids Research
- Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscapeAurélien Griffon, Quentin Barbier, Jordi Dalino, Jacques van Helden, Salvatore Spicuglia, Benoît Ballester · 2014 · Nucleic Acids Research
- DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanismAli Sharifi‐Zarchi, Daniela Gerovska D, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans Robert Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand et al. · 2017 · BMC Genomics
- Glucocorticoid receptor activates poised FKBP51 locus through long-distance interactionsPaakinaho, Ville, Makkonen, Harri, Jääskeläinen, Tiina, Palvimo, Jorma J. · 2010 · Molecular Endocrinology
- MIR retrotransposon sequences provide insulators to the human genomeJianrong Wang, Cristina Vicente‐García, Davide Seruggia, Eduardo Moltó, Ana Fernández‐Miñán, Ana Neto, Elbert Lee, José Luis Gómez-Skármeta, Lluı́s Montoliu, Victoria V. Lunyak et al. · 2015 · Proceedings of the National Academy of Sciences
- Emerging epigenetic mechanisms of long non-coding RNAsKatie Schaukowitch, Tae-Kyung Kim · 2013 · Neuroscience
- Long non-coding RNAs and enhancersUlf Andersson Ørom, Ramin Shiekhattar · 2011 · Current Opinion in Genetics & Development
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- Genetic basis of autoimmunityAlexander Marson, William J. Housley, David A. Hafler · 2015 · Journal of Clinical Investigation
- Molecular targets of epigenetic regulation and effectors of environmental influences☆☆☆Supratim Choudhuri, Yue Cui, Curtis D. Klaassen · 2010 · Toxicology and Applied Pharmacology
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- Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machinesMichael Fernández, Diego Miranda‐Saavedra · 2012 · Nucleic Acids Research
- Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locusXiaoyang Zhang, Richard C. Sallari, Swneke Donovan Bailey, Jason H. Moore, Mathieu Lupien · 2012 · Genome Research
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- KDM5B is a master regulator of the H3K4-methylome in stem cells, development and cancerBesa Xhabija, Benjamin L. Kidder · 2018 · Seminars in Cancer Biology
- Dynamic Regulation of Schwann Cell Enhancers after Peripheral Nerve InjuryHolly A. Hung, Guannan Sun, Sündüz Keleş, John P. Svaren · 2015 · Journal of Biological Chemistry
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- Enhancer RNA profiling predicts transcription factor activityJoseph G. Azofeifa, Mary Ann Allen, Josephina Hendrix, Timothy Read, Jonathan D. Rubin, Robin D. Dowell · 2018 · Genome Research
- Cell-Type-Specific Control of Enhancer Activity by H3K9 TrimethylationYina Zhu, Dominic van Essen, Simona Saccani · 2012 · Molecular Cell
- Intronic enhancers coordinate epithelial-specific looping of the active CFTR locusChristopher J. Ott, Neil P. Blackledge, Jenny L. Kerschner, Shih‐Hsing Leir, Gregory E. Crawford, Calvin U. Cotton, Ann Harris · 2009 · Proceedings of the National Academy of Sciences
- Genome-wide discovery of human heart enhancersLeelavati Narlikar, Noboru J. Sakabe, Alexander A. Blanski, F.E. Arimura, John M. Westlund, Marcelo A. Nóbrega, Ivan Ovcharenko · 2010 · Genome Research
- Genome-wide prediction of transcription factor binding sites using an integrated modelWon, Kyoung-Jae, Ren, Bing, Wang, Wei · 2010 · Genome Biology
- Helper T-cell differentiation and plasticity: insights from epigeneticsKiyoshi Hirahara, Golnaz Vahedi, Kamran Ghoreschi, Xiang‐Ping Yang, Shingo Nakayamada, Yuka Kanno, John J. O’Shea, Arian D. J. Laurence · 2011 · Immunology
- Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmentJan Jakub Żylicz, Sabine Dietmann, Ufuk Günesdogan, Jamie A. Hackett, Delphine Cougot, Caroline Guat Lay Lee, M. Azim Surani · 2015 · eLife
- Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenomeAndrea J. Cohen, Alina Saiakhova, Olivia Corradin, Jennifer M. Luppino, Katreya Lovrenert, Cynthia F. Bartels, James J. Morrow, Stephen C. Mack, Gursimran K. Dhillon, Lydia Beard et al. · 2017 · Nature Communications
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- Chromatin signatures of active enhancersSalvatore Spicuglia, Laurent Vanhille · 2012 · Nucleus
- What does our genome encode?John A. Stamatoyannopoulos · 2012 · Genome Research
- Enhancer methylation dynamics contribute to cancer plasticity and patient mortalityRachel E. Bell, Tamar Golan, Danna Sheinboim, Hagar Malcov, David Amar, Avi Salamon, Tamar Liron, Sahar Gelfman, Yankel Gabet, Ron Shamir A et al. · 2016 · Genome Research
- Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liverHoffman, Brad G., Robertson, Gordon, Zavaglia, Bogard, Beach, Mike, Cullum, Rebecca, Lee, Sam, Soukhatcheva, Galina, Li, Leping, Wederell, Elizabeth D., Thiessen, Nina et al. · 2010 · Genome Research
- In the loop: promoter–enhancer interactions and bioinformaticsAntonio Mora, Geir Kjetil Sandve, Odd S. Gabrielsen, Ragnhild Eskeland · 2015 · Briefings in Bioinformatics
- Small Cell Lung Cancer Exhibits Frequent Inactivating Mutations in the Histone Methyltransferase KMT2D/MLL2 : CALGB 151111 (Alliance)Arnaud Augert, Qing Zhang, Breanna M. Bates, Min Cui, Xiaofei Wang, Gary M. Wildey, Afshin Dowlati, David P MacPherson · 2016 · Journal of Thoracic Oncology
- Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed bindingIan C. McDowell, Alejandro Barrera, Anthony M. D’Ippolito, Christopher M. Vockley, Linda K. Hong, Sarah M. Leichter, Luke C. Bartelt, William H. Majoros, Lingyun Song, Alexias Safi et al. · 2018 · Genome Research
- The genomic landscape of cohesin-associated chromatin interactionsDeMare, Laura E., Leng, Jing, Cotney, Justin, Reilly, Steven K., Yin, Jun, Sarro, Richard, Noonan, James P. · 2013 · Genome Research
- Predicting the human epigenome from DNA motifsJohn W. Whitaker, Zhao Chen, Wei Ting Wang · 2014 · Nature Methods
- DNA methylation dynamics in cellular commitment and differentiationMònica Suelves, Elvira Carrió, Yaiza Núñez‐Álvarez, Miguel Angel Peinado · 2016 · Briefings in Functional Genomics
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- Tyrosine phosphorylation of histone H2A by CK2 regulates transcriptional elongationHarihar Basnet, Xue Bessie Su, Yuliang Tan, Jill Meisenhelder, Daria Merkurjev, Kenneth A. Ohgi, Tony R. Hunter, Lorraine Pillus, Michael G. Rosenfeld · 2014 · Nature
- Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencingFaizaan Mohammad, Gaurav Kumar Pandey, Tanmoy Mondal, Stefan Enroth, Lisa Redrup, Ulf B Gyllensten, Chandrasekhar Kanduri · 2012 · Development
- Cis-regulatory mutations in human diseaseDouglas J. Epstein · 2009 · Briefings in Functional Genomics and Proteomics
- Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in miceMina L. Kojima, Dirk G. de Rooij, David C. Page · 2019 · eLife