Topological domains in mammalian genomes identified by analysis of chromatin interactions

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Items 101–200 of 1,052

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4. The Energetics and Physiological Impact of Cohesin Extrusion
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5. High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome
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7. Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors
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8. Three-dimensional genome architecture: players and mechanisms
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9. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
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10. Complexity of chromatin folding is captured by the strings and binders switch model
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11. The interplay of epigenetic marks during stem cell differentiation and development
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12. Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin
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13. Roles and regulation of histone methylation in animal development
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14. The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
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15. Mapping Human Epigenomes
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16. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
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17. Enhancer loops appear stable during development and are associated with paused polymerase
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18. CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
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19. Evolutionarily Conserved Principles Predict 3D Chromatin Organization
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20. HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
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21. DNA replication origin activation in space and time
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22. Topology of mammalian developmental enhancers and their regulatory landscapes
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23. Transcription factors and 3D genome conformation in cell-fate decisions
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24. Allelic reprogramming of 3D chromatin architecture during early mammalian development
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25. Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA
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26. Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance
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27. 3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis
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28. DNMT3A in haematological malignancies
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29. Genome folding through loop extrusion by SMC complexes
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30. CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation
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31. Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
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32. Methods for mapping 3D chromosome architecture
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33. Epigenetic control of CD8+ T cell differentiation
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34. Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics
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35. Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
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36. Spatial heterogeneity in the mammalian liver
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37. Three-dimensional genome structures of single diploid human cells
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38. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
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39. Emerging roles of linker histones in regulating chromatin structure and function
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40. Mechanisms of Programmed DNA Lesions and Genomic Instability in the Immune System
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41. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation
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42. Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
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43. Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
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44. Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
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45. Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging
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46. Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation
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47. Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
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48. Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
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49. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
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50. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
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51. Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element
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52. Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
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53. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
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54. Functional and topological characteristics of mammalian regulatory domains
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55. Transcription Elongation Can Affect Genome 3D Structure
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56. Integrative detection and analysis of structural variation in cancer genomes
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57. Roles of transposable elements in the regulation of mammalian transcription
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58. The Intersection of Epigenetics and Metabolism in Trained Immunity
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59. The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
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60. Visualizing DNA folding and RNA in embryos at single-cell resolution
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61. Breaking TADs: How Alterations of Chromatin Domains Result in Disease
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62. Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
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63. Membrane and Nuclear Estrogen Receptor Alpha Actions: From Tissue Specificity to Medical Implications
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65. Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
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66. CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
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67. Functional implications of genome topology
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68. Genome-wide Mapping and Characterization of Notch-Regulated Long Noncoding RNAs in Acute Leukemia
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69. The Many Roles of BAF (mSWI/SNF) and PBAF Complexes in Cancer
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70. Structural organization of the inactive X chromosome in the mouse
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71. A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
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72. Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1
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73. Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
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74. The Role of Chromosome Domains in Shaping the Functional Genome
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75. 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
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77. Towards a comprehensive catalogue of validated and target-linked human enhancers
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78. Cohesin-mediated interactions organize chromosomal domain architecture
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79. The 3D genome in transcriptional regulation and pluripotency
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80. The Spatial Organization of the Human Genome
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81. The Genetics of Transcription Factor DNA Binding Variation
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82. Comparative analysis of metazoan chromatin organization
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83. Understanding 3D genome organization by multidisciplinary methods
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85. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
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86. Epigenetic Regulation in Neurodegenerative Diseases
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87. dbSUPER: a database of super-enhancers in mouse and human genome
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88. Genome-wide association studies of cancer: current insights and future perspectives
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89. High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation
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90. The role of enhancers in cancer
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91. The Hitchhiker’s guide to Hi-C analysis: Practical guidelines
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92. Robust 4C-seq data analysis to screen for regulatory DNA interactions
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94. Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
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95. Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
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96. The Three-Dimensional Organization of Mammalian Genomes
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97. An atlas of dynamic chromatin landscapes in mouse fetal development
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98. A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture
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99. A compendium of promoter-centered long-range chromatin interactions in the human genome
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100. On the existence and functionality of topologically associating domains
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