The accessible chromatin landscape of the human genome

Cited by (1,010)

Items 401–500 of 1,010

1. Characterization of noncoding regulatory DNA in the human genome
   Ran Elkon, Reuven Agami · 2017 · Nature Biotechnology
2. DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements
   Tim R. Mercer, Stacey L. Edwards, Michael B. Clark, Shane J. Neph, Hao Wang, Andrew B. Stergachis, Sam John, Richard S. Sandstrom, Guoliang Li, Kuljeet Singh Sandhu et al. · 2013 · Nature Genetics
3. Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation
   Catherine Do, Charles F. Lang, J. P. Lin, Huferesh K. Darbary, Izabela Krupska, Aulona Gaba, Lynn Petukhova, Jean‐Paul Vonsattel, MARY PAT GALLAGHER, Robin Goland et al. · 2016 · The American Journal of Human Genetics
4. Molecular classification of Crohn's disease reveals two clinically relevant subtypes
   Matthew Weiser, Jeremy M. Simon, Bharati D. Kochar, Adelaide Tovar, Jennifer W. Israel, Adam Robinson, Gregory R. Gipson, Matthew S. Schaner, Hans H. Herfarth, Ryan Balfour Sartor et al. · 2016 · Gut
5. De Novo Synonymous Mutations in Regulatory Elements Contribute to the Genetic Etiology of Autism and Schizophrenia
   Atsushi Takata, Iuliana Ionita‐Laza, Joseph A. Gogos, Bin Xu, Maria Karayiorgou · 2016 · Neuron
6. Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts
   Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L. · 2020 · Molecular Cell
7. North Carolina Macular Dystrophy Is Caused by Dysregulation of the Retinal Transcription Factor PRDM13
   Kent W. Small, Adam P. DeLuca, S. Scott Whitmore, Thomas Rosenberg, Rosemary Silva-Garcia, Nitin Udar, Bernard Puech, CHARLES A. GARCIA, Thomas A. Rice, Gerald Allen Fishman et al. · 2015 · Ophthalmology
8. Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair
   Paz P Polak, Michael S. Lawrence, Eric Haugen, Nina Stoletzki, Petar Stojanov, Robert E. Thurman, Levi A. Garraway, Sergei M. Mirkin, Gad A. Getz, John A. Stamatoyannopoulos et al. · 2013 · Nature Biotechnology
9. Promoter or enhancer, what’s the difference? Deconstruction of established distinctions and presentation of a unifying model
   Andersson, Robin · 2015 · BioEssays
10. Origins of aberrant DNA methylation in acute myeloid leukemia
    Till Schoofs, Wolfgang E. Berdel, Carsten Müller‐Tidow · 2013 · Leukemia
11. Massively parallel cis-regulatory analysis in the mammalian central nervous system
    Susan Q. Shen, Connie A. Myers, Andrew E.O. Hughes, Leah C. Byrne, John G. Flannery, Joseph C. Corbo · 2015 · Genome Research
12. Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants
    Zhang, Siwei, Zhang, Hanwen, Zhou, Yifan, Qiao, Min, Zhao, Siming, Kozlova, Alena, Shi, Jianxin, Sanders, Alan R., Wang, Gao, Luo, Kaixuan et al. · 2020 · Science
13. In the loop: promoter–enhancer interactions and bioinformatics
    Antonio Mora, Geir Kjetil Sandve, Odd S. Gabrielsen, Ragnhild Eskeland · 2015 · Briefings in Bioinformatics
14. Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes
    Dan Su, Xuting Wang, Michelle R. Campbell, Devin K. Porter, Gary S. Pittman, Brian D. Bennett, Ma Wan, Neal A. Englert, Christopher L. Crowl, Ryan C. Gimple et al. · 2016 · PLoS ONE
15. Chromosome 17q21 Genes ORMDL3 and GSDMB in Asthma and Immune Diseases
    Sudipta Das, Marina Miller, David H. Broide · 2017 · Advances in immunology
16. Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
    Xiaoyang Zhang, Peter S. Choi, Joshua M. Francis, Galen F. Gao, Joshua David Campbell, Aruna Ramachandran, Yoichiro Mitsuishi, Gavin Ha, Juliann Shih, Francisca Vázquez et al. · 2017 · Cancer Discovery
17. Universal annotation of the human genome through integration of over a thousand epigenomic datasets
    Ha Vu, Jason Ernst · 2022 · Genome biology
18. Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding
    Ian C. McDowell, Alejandro Barrera, Anthony M. D’Ippolito, Christopher M. Vockley, Linda K. Hong, Sarah M. Leichter, Luke C. Bartelt, William H. Majoros, Lingyun Song, Alexias Safi et al. · 2018 · Genome Research
19. Interferon-γ Signaling in Melanocytes and Melanoma Cells Regulates Expression of CTLA-4
    Xuan Mo, Hanghang Zhang, Sarah Preston, Kayla A. Martin, Bo Zhou, Nish Vadalia, Ana M. Gamero, Jonathan Soboloff, Italo Tempera, M. Raza Zaidi · 2017 · Cancer Research
20. A Brief Review on the Human Encyclopedia of DNA Elements (ENCODE) Project
    Hongzhu Qu, Xiangdong Fang · 2013 · Genomics Proteomics & Bioinformatics
21. Building Transcription Factor Binding Site Models to Understand Gene Regulation in Plants
    Xuelei Lai, Arnaud Stigliani, Gilles Vachon, Cristel C. Carles, Cezary Smaczniak, Chloé Zubieta, Kerstin Kaufmann, François Parcy · 2018 · Molecular Plant
22. Chromatin-Driven Behavior of Topologically Associating Domains
    Filippo Ciabrelli, Giacomo Cavalli · 2014 · Journal of Molecular Biology
23. A predictive modeling approach for cell line-specific long-range regulatory interactions
    Sushmita Roy, Alireza Fotuhi Siahpirani, Deborah A. Chasman, Sara Knaack, Ferhat Ay, Ron M. Stewart, Michael D. Wilson, Rupa Sridharan · 2015 · Nucleic Acids Research
24. Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells
    Andrew King, Kevin Y. Huang, Liudmilla Rubbi, Shuo Liu, Cun‐Yu Wang, Yinsheng Wang, Matteo A. Pellegrini, Guoping Fan · 2016 · Cell Reports
25. 3DIV: A 3D-genome Interaction Viewer and database
    Dongchan Yang, Insu Jang, Jinhyuk Choi, Min-Seo Kim, Andrew Lee, Hyun-Woong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, Byung-Wook Lee · 2017 · Nucleic Acids Research
26. Genome-Wide Analysis of Wilms’ Tumor 1-Controlled Gene Expression in Podocytes Reveals Key Regulatory Mechanisms
    Martin Kann, Sandrine S. Ettou, Youngsook Lucy Jung, Maximilian O. Lenz, Mary E. Taglienti, Peter J. Park, Bernhard Schermer, Thomas R. Benzing, Jordan A. Kreidberg · 2015 · Journal of the American Society of Nephrology
27. rSNPBase: a database for curated regulatory SNPs
    Liyuan Guo, Yang Du, Suhua Chang, Kunlin Zhang, Jing Wang · 2013 · Nucleic Acids Research
28. Gene regulatory mechanisms underpinning prostate cancer susceptibility
    Thomas Whitington, Ping Hui Gao, Wei Song, Helen Ross‐Adams, Alastair D.G. Lamb, Yuehong Yang, Ilaria Svezia, Daniel Klevebring, Ian Geoffrey Mills, Robert Karlsson et al. · 2016 · Nature Genetics
29. Genomic discovery of potent chromatin insulators for human gene therapy
    Liu, Mingdong, Maurano, Matthew T, Wang, Hao, Qi, Heyuan, Song, Chao-Zhong, Navas, Patrick A, Emery, David W, Stamatoyannopoulos, John A, Stamatoyannopoulos, George · 2015 · Nature Biotechnology
30. Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response
    Goldstein, Ido, Baek, Songjoon, Presman, Diego M., Paakinaho, Ville, Swinstead, Erin E., Hager, Gordon L. · 2017 · Genome Research
31. A MITE Transposon Insertion Is Associated with Differential Methylation at the Maize Flowering Time QTL Vgt1
    Castelletti, Sara, Tuberosa, Roberto, Pindo, Massimo, Salvi, Silvio · 2014 · G3 Genes|Genomes|Genetics
32. 52 Genetic Loci Influencing Myocardial Mass
    Pim van der Harst, Jessica van Setten, Niek Verweij, Georg Vogler, Lude Franke, Matthew T. Maurano, Xinchen Wang, Irene Mateo Leach, Mark Eijgelsheim, Nona Sotoodehnia et al. · 2016 · Journal of the American College of Cardiology
33. ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
    Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang et al. · 2016 · BMC Bioinformatics
34. DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation
    Anne Y. Lai, Deepak Mav, Ruchir Shah, Sara A. Grimm, Dhiral P. Phadke, Katerina Hatzi, Ari M. Melnick, Cissy Geigerman, Steve E. Sobol, David L. Jaye et al. · 2013 · Genome Research
35. Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
    Larry D. Mesner, Veena Valsakumar, Marcin P. Cieslik, Rebecca Roche Pickin, Joyce L. Hamlin, Stefan Bekiranov · 2013 · Genome Research
36. Linking Stochastic Fluctuations in Chromatin Structure and Gene Expression
    Christopher R. Brown, Changhui Mao, Elena Falkovskaia, Melissa S. Jurica, Hinrich Boeger · 2013 · PLoS Biology
37. ETS1 is a genome-wide effector of RAS/ERK signaling in epithelial cells
    Joshua P. Plotnik, Justin A. Budka, Mary W. Ferris, Peter C. Hollenhorst · 2014 · Nucleic Acids Research
38. Partially Redundant Enhancers Cooperatively Maintain Mammalian Pomc Expression Above a Critical Functional Threshold
    Daniel D. Lam, Flávio S. J. de Souza, Sofía Nasif, Miho Yamashita, Rodrigo López‐Leal, Veronica Otero-Corchón, Kana Meece, Harini Sampath, Aaron J. Mercer, Sharon L. Wardlaw et al. · 2015 · PLoS Genetics
39. Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci
    Marc P. Forrest, Hanwen Zhang, Winton Moy, Heather McGowan, Catherine Leites, Leonardo E. Dionisio, Zihui Xu, Jianxin Shi, Alan R. Sanders, William James Greenleaf et al. · 2017 · Cell stem cell
40. Protein−DNA binding in the absence of specific base-pair recognition
    Ariel Afek, J.L. Schipper, John Horton, Raluca Gordân, David B. Lukatsky · 2014 · Proceedings of the National Academy of Sciences
41. What does our genome encode?
    John A. Stamatoyannopoulos · 2012 · Genome Research
42. Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
    Jimin Tan, Nina Shenker-Tauris, Javier Rodriguez-Hernaez, Eric Wang, Theodore Sakellaropoulos, Francesco E. Boccalatte, Palaniraja Thandapani, Jane A. Skok, Iannis Aifantis, David Fenyö et al. · 2023 · Nature Biotechnology
43. Transcriptional and epigenetic regulation of T‐helper lineage specification
    Subhash Kumar Tripathi, Riitta Lahesmaa · 2014 · Immunological Reviews
44. Genome accessibility is widely preserved and locally modulated during mitosis
    Chris C.‐S. Hsiung, Christapher S. Morrissey, Maheshi Udugama, Christopher L. Frank, Cheryl A. Keller, Songjoon Baek, Belinda M. Giardine, Gregory E. Crawford, Myong‐Hee Sung, Ross C. Hardison et al. · 2014 · Genome Research
45. DNA methylation and evolution of duplicate genes
    Thomas E. Keller, Soojin V. Yi · 2014 · Proceedings of the National Academy of Sciences
46. Advances in Blood Pressure Genomics
    Patricia B. Munroe, Michael R. Barnes, Mark J. Caulfield · 2013 · Circulation Research
47. Zinc Fingers, TALEs, and CRISPR Systems: A Comparison of Tools for Epigenome Editing
    Charlene Babra Waryah, Colette Moses, Mahira Arooj, Pilar Blancafort · 2018 · Methods in molecular biology
48. Mechanisms of Binding Specificity among bHLH Transcription Factors
    Xabier de Martin, Reza Sodaei, Gabriel Santpere · 2021 · International Journal of Molecular Sciences
49. TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity
    Morgan A. Sammons, Jiajun Zhu, Adam M. Drake, Shelley L. Berger · 2014 · Genome Research
50. The Impact of Next-Generation Sequencing on Cancer Genomics: From Discovery to Clinic
    Elaine R. Mardis · 2018 · Cold Spring Harbor Perspectives in Medicine
51. A comprehensive comparison of tools for differential ChIP-seq analysis
    Sebastian Steinhauser, Nils Kurzawa, Roland Eils, Carl Herrmann · 2016 · Briefings in Bioinformatics
52. Regulation of MUC5B Expression in Idiopathic Pulmonary Fibrosis
    Britney A. Helling, Anthony N. Gerber, Vineela Kadiyala, Sarah K. Sasse, Brent S. Pedersen, Lenore Sparks, Yasushi Nakano, Tsukasa Okamoto, Christopher M. Evans, Ivana V. Yang et al. · 2017 · American Journal of Respiratory Cell and Molecular Biology
53. Getting the genome in shape: the formation of loops, domains and compartments
    Britta A. M. Bouwman, Wouter L. de Laat · 2015 · Genome biology
54. Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
    Chris A. Brackley, Jill M. Brown, Dominic Waithe, Christian Babbs, James O. J. Davies, Jim R. Hughes, Veronica J. Buckle, Davide Marenduzzo · 2016 · Genome biology
55. Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
    Jacob Matthew Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble · 2020 · Genome biology
56. Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures
    Xinchen Wang, Nathan R. Tucker, Gizem Rizki, Robert W. Mills, Peter H.L. Krijger, Elzo de Wit, Vidya Subramanian, Eric Bartell, Xinh-Xinh Nguyen, Jiangchuan Ye et al. · 2016 · eLife
57. Dynamic Gene Regulatory Networks of Human Myeloid Differentiation
    Ricardo N. Ramírez, Nicole C. El-Ali, Mikayla Anne Mager, Dana Wyman, Ana Conesa, Ali Mortazavi · 2017 · Cell Systems
58. Tim-3 signaling in peripheral NK cells promotes maternal-fetal immune tolerance and alleviates pregnancy loss
    Yanhong Li, Jiayuan Zhang, Di Zhang, Xiaowu Hong, Tao Yu, Songcun Wang, Yuanyuan Xu, Hailan Piao, Weijie Yin, Min Yu et al. · 2017 · Science Signaling
59. Helper T‐cell identity and evolution of differential transcriptomes and epigenomes
    Golnaz Vahedi, Amanda C. Poholek, Timothy Wesley Hand, Arian D. J. Laurence, Yuka Kanno, John J. O’Shea, Kiyoshi Hirahara · 2013 · Immunological Reviews
60. Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases
    Yasuhiro Murakawa, Masahito Yoshihara, Hideya Kawaji, Miki Nishikawa, Hatem Zayed, Harukazu Suzuki, Yoshihide Hayashizaki · 2016 · Trends in Genetics
61. dCas9: A Versatile Tool for Epigenome Editing
    Daan J.W. Brocken, Mariliis Tark‐Dame, Remus Thei Dame · 2017 · Current Issues in Molecular Biology
62. A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression
    Michael D. Gallagher, Marijan Posavi, Peng Huang, Travis L. Unger, Yosef Berlyand, Analise L. Gruenewald, Alessandra Chesi, Elisabetta Manduchi, Andrew D. Wells, Struan F.A. Grant et al. · 2017 · The American Journal of Human Genetics
63. Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
    Muhammad Shoaib, Qinming Chen, Xiangyan Shi, Nidhi Nair, Chinmayi Prasanna, Renliang Yang, David Walter, Klaus Stensgaard Frederiksen, Hjörleifur Einarsson, J. Peter Svensson et al. · 2021 · Nature Communications
64. piRNA clusters and open chromatin structure
    Soichiro Yamanaka, Mikiko C. Siomi, Haruhiko Siomi · 2014 · Mobile DNA
65. Chromatin and epigenetic features of long-range gene regulation
    Nathan Harmston, Boris Lenhard · 2013 · Nucleic Acids Research
66. Identification of regulatory elements from nascent transcription using dREG
    Zhong Wang, Tinyi Chu, Lauren A. Choate, Charles G. Danko · 2018 · Genome Research
67. Inducible chromatin priming is associated with the establishment of immunological memory in T cells
    Bevington, Sarah L, Cauchy, Pierre, Piper, Jason, Bertrand, Elisabeth, Lalli, Naveen, Jarvis, Rebecca C, Gilding, Liam Niall, Ott, Sascha, Bonifer, Constanze, Cockerill, Peter N · 2016 · The EMBO Journal
68. Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration
    Bojana Lucic, Heng‐Chang Chen, Maja Kuzman, Eduard Valera Zorita, Julia Wegner, Vera Minneker, Wei Wang, Raffaele Fronza, Stefanie Laufs, Manfred Schmidt et al. · 2019 · Nature Communications
69. Mapping Native R-Loops Genome-wide Using a Targeted Nuclease Approach
    Qingqing Yan, Emily J. Shields, Roberto Bonasio, Kavitha Sarma · 2019 · Cell Reports
70. Personal and population genomics of human regulatory variation
    Benjamin Vernot, Andrew B. Stergachis, Matthew T. Maurano, Jeff D. Vierstra, Shane J. Neph, Robert E. Thurman, John A. Stamatoyannopoulos, Joshua M. Akey · 2012 · Genome Research
71. Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
    Sethi, Anurag, Gu, Mengting, Gumusgoz, Emrah, Chan, Landon, Yan, Koon-Kiu, Rozowsky, Joel, Barozzi, Iros, Afzal, Veena, Akiyama, Jennifer A., Plajzer-Frick, Ingrid et al. · 2020 · Nature Methods
72. 4DGenome: a comprehensive database of chromatin interactions
    Li Teng, Bing He, Jiahui Wang, Kai Tan · 2016 · Bioinformatics
73. Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants
    Tokhir Dadaev, Edward J. Saunders, Paul J. Newcombe, Ezequiel Anokian, Daniel A. Leongamornlert, Mark N. Brook, Clara Cieza-Borrella, Martina Mijušković, Sarah Wakerell, Ali Amin Al Olama et al. · 2018 · Nature Communications
74. Transcription-factor-mediated supervision of global genome architecture maintains B cell identity
    Timothy M. Johanson, Aaron T. L. Lun, Hannah D. Coughlan, Tania Tan, Gordon K. Smyth, Stephen L. Nutt, Rhys S. Allan · 2018 · Nature Immunology
75. A review of post-GWAS prioritization approaches
    Lin Hou, Hongyu Zhao · 2013 · Frontiers in Genetics
76. GeMes, Clusters of DNA Methylation under Genetic Control, Can Inform Genetic and Epigenetic Analysis of Disease
    Yun Liu, Xin Li, Martin J. Aryee, Tomas J. Ekström, Leonid Padyukov, Lars Klareskog, Amy R. Vandiver, Ann Zenobia Moore, Toshiko Tanaka, Luigi Ferrucci et al. · 2014 · The American Journal of Human Genetics
77. Tools for experimental and computational analyses of off-target editing by programmable nucleases
    Bao, X. Robert, Pan, Yidan, Lee, Ciaran M., Davis, Timothy H., Bao, Gang · 2021 · Nature Protocols
78. Chromatin accessibility dynamics across C. elegans development and ageing
    Jürgen Jänes, Dong Yan, Michael Schoof, Jacques Serizay, Alex Appert, Chiara Cerrato, Carson Woodbury, Ron Chen, Carolina Gemma, Ni Huang et al. · 2018 · eLife
79. Neurobiological functions of transcriptional enhancers
    Alex S. Nord, Anne E. West · 2019 · Nature Neuroscience
80. A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods
    Moore, Jill E., Pratt, Henry E., Purcaro, Michael J., Weng, Zhiping · 2020 · Genome Biology
81. Epigenetics, chromatin and genome organization: recent advances from the ENCODE project
    Lee Siggens, Karl Ekwall · 2014 · Journal of Internal Medicine
82. 4DGenome: a comprehensive database of chromatin interactions
    Li Teng, Bing He, Jiahui Wang, Kai Tan · 2015 · Bioinformatics
83. Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity
    Songjoon Baek, Ido Goldstein, Gordon L. Hager · 2017 · Cell Reports
84. Genomic methods in profiling DNA accessibility and factor localization
    David C. Klein, Sarah J. Hainer · 2019 · Chromosome Research
85. Computational Oncology in the Multi-Omics Era: State of the Art
    Guillermo de Anda‐Jáuregui, Enrique Hernandez Lemus · 2020 · Frontiers in Oncology
86. Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
    Vitor Onuchic, Eugene Lurie, Ivenise Carrero, Piotr Pawliczek, Ronak Y. Patel, Joel S. Rozowsky, Timur R. Galeev, Zhuoyi Huang, Robert C. Altshuler, Zhizhuo Zhang et al. · 2018 · Science
87. Impact of the X Chromosome and sex on regulatory variation
    Kimberly R. Kukurba, Princy Parsana, Brunilda Balliu, Kevin S. Smith, Zachary Zappala, David A. Knowles, Marie-Julie Favé, Joe R. Davis, Xin Li, Xiaowei Zhu et al. · 2016 · Genome Research
88. Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1
    Pham, Thu-Hang, Minderjahn, Julia, Schmidl, Christian, Hoffmeister, Helen, Schmidhofer, Sandra, Chen, Wei, Längst, Gernot, Benner, Christopher, Rehli, Michael · 2013 · Nucleic Acids Research
89. NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence
    Parry, Aled J., Hoare, Matthew, Bihary, Dóra, Hänsel-Hertsch, Robert, Smith, Stephen, Tomimatsu, Kosuke, Mannion, Elizabeth, Smith, Amy, D’Santos, Paula, Russell, I. Alasdair et al. · 2018 · Nature Communications
90. DNA methylation mediates development of HbA1c-associated complications in type 1 diabetes
    Zhuo Chen, Feng Miao, Barbara H. Braffett, John M. Lachin, Lingxiao Zhang, Xiwei Wu, Delnaz Roshandel, Melanie A. Carless, Xuejun Arthur Li, Joshua D. Tompkins et al. · 2020 · Nature Metabolism
91. At the dawn: cell-free DNA fragmentomics and gene regulation
    Yaping Liu · 2021 · British Journal of Cancer
92. Genetic variants associated with autoimmunity drive NFκB signaling and responses to inflammatory stimuli
    William J. Housley, Salvador D. Fernandez, Kenneth Vera, Sasidhar R. Murikinati, Jaime Grutzendler, Nicole Cuerdon, Laura R. Glick, Philip L. De Jager, Mitja Mitrovič, Chris J. Cotsapas et al. · 2015 · Science Translational Medicine
93. Noncoding somatic and inherited single-nucleotide variants converge to promote ESR1 expression in breast cancer
    Swneke Donovan Bailey, Kinjal Desai, Ken J. Kron, Parisa Mazrooei, Nasa Sinnott-Armstrong, Aislinn E. Treloar, Mark Dowar, Kelsie L. Thu, David W. Cescon, Jennifer Silvester et al. · 2016 · Nature Genetics
94. Identification of rare de novo epigenetic variations in congenital disorders
    Mafalda Barbosa, Ricky S. Joshi, Paras Garg, Alejandro Martin-Trujillo, Nihir Patel, Bharati Jadhav, Corey T. Watson, William T. Gibson, Kelsey Chetnik, Chloé Tessereau et al. · 2018 · Nature Communications
95. Interpreting pathways to discover cancer driver genes with Moonlight
    Antonio Colaprico, Catharina Olsen, Matthew H. Bailey, Gabriel Odom, Thilde Terkelsen, Tiago C. Silva, André Vidas Olsen, Laura Cantini, Andrei Y. Zinovyev, Emmanuel Barillot et al. · 2020 · Nature Communications
96. Clonal hematopoiesis of indeterminate potential, DNA methylation, and risk for coronary artery disease
    Md Mesbah Uddin, Ngoc Quynh Nguyen, Bing Yu, Jennifer A. Brody, Akhil Pampana, Tetsushi Nakao, Myriam Fornage, Jan Bressler, Nona Sotoodehnia, Joshua S. Weinstock et al. · 2022 · Nature Communications
97. Sleep–wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex
    Charlotte N. Hor, Jake Yeung, Maxime Jan, Yann Emmenegger, Jeffrey T. Hubbard, Ioannis Xénarios, Félix Naef, Paul Franken · 2019 · Proceedings of the National Academy of Sciences
98. A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data
    Gaoyang Li, Shaliu Fu, Shuguang Wang, Chenyu Zhu, Bin Duan, Chen Tang, Xiaohan Chen, Guohui Chuai, Ping Q. Wang, Qi Liu · 2022 · Genome biology
99. An expanded registry of candidate cis-regulatory elements
    Jill E. Moore, Henry Pratt, Kaili Fan, Nishigandha N. Phalke, Jonathan Fisher, Shaimae I. Elhajjajy, Gregory Andrews, Mingshi Gao, Nicole Shedd, Yu Fu et al. · 2026 · Nature
100. Investigating the Transcriptional Control of Cardiovascular Development
     Irfan S. Kathiriya, Elphège Pierre Nora, Benoit G. Bruneau · 2015 · Circulation Research