Systems-level antimicrobial drug and drug synergy discovery
Abstract
Here, we review the 'target-centric' genomic strategy to antimicrobial discovery and share our perspective on identification, validation and prioritization of potential antimicrobial drug targets in the context of emerging chemical biology, genomics and phenotypic screening strategies. We propose that coupling the dual processes of antimicrobial small-molecule screening and target identification in a whole-cell context is essential to empirically annotate 'druggable' targets and advance early stage antimicrobial discovery. We also advocate a systems-level approach to annotating synthetic-lethal genetic interactions comprehensively within yeast and bacteria models. The resulting genetic interaction networks provide a landscape to rationally predict and exploit drug synergy between cognate inhibitors. We posit that synergistic combination agents provide an important and largely unexploited strategy to 'repurpose' existing chemical space and simultaneously address issues of potency, spectrum, toxicity and drug resistance in early stages of antimicrobial drug discovery.
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Synthetic lethal interactions can be harnessed to identify new antibiotic or cancer therapeutic targets.
“Synthetic lethal interactions are of particular interest as they can be harnessed to identify new antibiotic or cancer therapeutic targets (6, 7).”
From A global genetic interaction network maps a wiring diagram of cellular function (2016) · cites this paper as [6]
Cites
Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., & Mori, H. (2006) · Molecular Systems Biology · doi:10.1038/msb4100050 · Cited by 7,858 · see citing works
Bad Bugs, No Drugs: No ESKAPE! An Update from the Infectious Diseases Society of America
Boucher, H. W., Talbot, G. H., Bradley, J. S., Edwards, J. E., Gilbert, D. N., Rice, L. B., Scheld, M., Spellberg, B. J., & Bartlett, J. (2008) · Clinical Infectious Diseases · doi:10.1086/595011 · Cited by 4,978 · see citing works
Functional profiling of the Saccharomyces cerevisiae genome
Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B., et al. (2002) · Nature · doi:10.1038/nature00935 · Cited by 4,316 · see citing works
Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., et al. (1999) · Science · doi:10.1126/science.285.5429.901 · Cited by 3,953 · see citing works
The Bacterial Cell EnvelopePreprint
Silhavy, T. J., Kahne, D. E., & Walker, S. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a000414 · Cited by 3,834 · see citing works
Genes required for mycobacterial growth defined by high density mutagenesis
Sassetti, C. M., Boyd, D. H., & Rubin, E. J. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03425.x · Cited by 2,544 · see citing works
Drugs for bad bugs: confronting the challenges of antibacterial discovery
Payne, D. J., Gwynn, M. N., Holmes, D. J., & Pompliano, D. L. (2007) · Nature Reviews Drug Discovery · doi:10.1038/nrd2201 · Cited by 2,512 · see citing works
Synergy, antagonism, and what the chequerboard puts between them
Odds, F. C. (2003) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkg301 · Cited by 2,498 · see citing works
A Diarylquinoline Drug Active on the ATP Synthase of <i>Mycobacterium tuberculosis</i>
Andries, K., Verhasselt, P., Guillemont, J., Göhlmann, H. W. H., Neefs, J.-M., Winkler, H., Van Gestel, J., Timmerman, P., Zhu, M., Lee, E., et al. (2005) · Science · doi:10.1126/science.1106753 · Cited by 2,191 · see citing works
The Genetic Landscape of a Cell
Costanzo, M., Baryshnikova, A., Bellay, J., Kim, Y., Spear, E. D., Sevier, C. S., Ding, H., Koh, J. L. Y., Toufighi, K., Mostafavi, S., et al. (2010) · Science · doi:10.1126/science.1180823 · Cited by 2,162 · see citing works
Self-citationSystematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants
Tong, A. H. Y., Evangelista, M., Parsons, A. B., Xu, H., Bader, G. D., Pagé, N., Robinson, M., Raghibizadeh, S., Hogue, C. W. V., Bussey, H., et al. (2001) · Science · doi:10.1126/science.1065810 · Cited by 2,138 · see citing works
Self-citationGlobal Mapping of the Yeast Genetic Interaction Network
Tong, A. H. Y., Lesage, G., Bader, G. D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G. F., Brost, R. L., Chang, M., et al. (2004) · Science · doi:10.1126/science.1091317 · Cited by 2,070 · see citing works
Self-citationHow were new medicines discovered?
Swinney, D. C., & Anthony, J. (2011) · Nature Reviews Drug Discovery · doi:10.1038/nrd3480 · Cited by 1,812 · see citing works
Antibiotics for Emerging Pathogens
Fischbach, M. A., & Walsh, C. T. (2009) · Science · doi:10.1126/science.1176667 · Cited by 1,787 · see citing works
Three Decades of β-Lactamase Inhibitors
Drawz, S. M., & Bonomo, R. A. (2010) · Clinical Microbiology Reviews · doi:10.1128/cmr.00037-09 · Cited by 1,709 · see citing works
Essential Bacillus subtilis genes
Kobayashi, K., Ehrlich, S., Albertini, A., Amati, G., Andersen, K. K., Arnaud, M., Asai, K., Ashikaga, S., Aymerich, S., Bessières, P., et al. (2003) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0730515100 · Cited by 1,451 · see citing works
Challenges of Antibacterial Discovery
Silver, L. L. (2011) · Clinical Microbiology Reviews · doi:10.1128/cmr.00030-10 · Cited by 1,376 · see citing works
The antibiotic resistome: the nexus of chemical and genetic diversity
Wright, G. D. (2007) · Nature Reviews Microbiology · doi:10.1038/nrmicro1614 · Cited by 1,373 · see citing works
Comprehensive transposon mutant library of Pseudomonas aeruginosa
Jacobs, M. A., Alwood, A., Thaipisuttikul, I., Spencer, D. H., Haugen, E., Ernst, S., Will, O., Kaul, R., Raymond, C. K., Levy, R., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2036282100 · Cited by 1,129 · see citing works
Chong, C. R., & Sullivan, D. J. (2007) · Nature · doi:10.1038/448645a · Cited by 996 · see citing works
An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants
Liberati, N. T., Urbach, J. M., Miyata, S., Lee, D. G., Drenkard, E., Wu, G., Villanueva, J. M., Wei, T., & Ausubel, F. M. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511100103 · Cited by 971 · see citing works
Synergistic drug combinations tend to improve therapeutically relevant selectivity
Lehár, J., Krueger, A., Avery, W., Heilbut, A. M., Johansen, L. M., Price, E. R., Rickles, R. J., Short, G. F., Staunton, J. E., Jin, X., et al. (2009) · Nature Biotechnology · doi:10.1038/nbt.1549 · Cited by 941 · see citing works
Moffatt, J. H., Harper, M., Harrison, P. F., Hale, J. D. F., VINOGRADOV, E. V., Seemann, T., Henry, R., Crane, B., Michael, F. S., Cox, A. D., et al. (2010) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00834-10 · Cited by 817 · see citing works
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
Gerdes, S., Scholle, M., Campbell, J., Balázsi, G., Ravasz, E., Daugherty, M., Somera, A., Kyrpides, N., Anderson, I., Gelfand, M., et al. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.19.5673-5684.2003 · Cited by 788 · see citing works
Broad-specificity efflux pumps and their role in multidrug resistance of Gram-negative bacteria
Nikaido, H., & Pagès, J. (2011) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2011.00290.x · Cited by 770 · see citing works
Wu, T., Malinverni, J. C., Ruiz, N., Kim, S., Silhavy, T. J., & Kahne, D. E. (2005) · Cell · doi:10.1016/j.cell.2005.02.015 · Cited by 769 · see citing works
Phenotypic Landscape of a Bacterial Cell
Nichols, R. J., Sen, Ś., Choo, Y. J., Beltrão, P., Zietek, M., Chaba, R., Lee, S., Kazmierczak, K. M., Lee, K. J., Wong, A., et al. (2010) · Cell · doi:10.1016/j.cell.2010.11.052 · Cited by 702 · see citing works
Antibiotics: Actions, Origins, Resistance
Walsh, C. T. (2003) · Medical Entomology and Zoology · Cited by 675 · see citing works
Parsons, A. B., Brost, R. L., Ding, H., Li, Z., Zhang, C., Sheikh, B., Brown, G. W., Kane, P. M., Hughes, T. R., & Boone, C. M. (2003) · Nature Biotechnology · doi:10.1038/nbt919 · Cited by 651 · see citing works
Self-citationWalsh, C. T. (2003) · Wiley eBooks · doi:10.1128/9781555817886 · Cited by 630 · see citing works
Systematic discovery of multicomponent therapeutics
Borisy, A. A., Elliott, P. J., Hurst, N. W., Lee, M. S., Lehár, J., Price, E. R., Serbedzija, G., Zimmermann, G. R., Foley, M. A., Stockwell, B. R., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1337088100 · Cited by 620 · see citing works
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutantsPreprint
Langridge, G. C., Phan, M., Turner, D., Perkins, T. T., Parts, L., Haase, J. K., Charles, I. G., Maskell, D. J., Peters, S. E., Gordon Dougan, B., et al. (2009) · Genome Research · doi:10.1101/gr.097097.109 · Cited by 618 · see citing works
Exploration of Essential Gene Functions via Titratable Promoter Alleles
Mnaimneh, S., Davierwala, A. P., Haynes, J., Moffat, J., Peng, W.-T., Zhang, W., Yang, X., Pootoolal, J., Chua, G., Lopez, A., et al. (2004) · Cell · doi:10.1016/j.cell.2004.06.013 · Cited by 604 · see citing works
Self-citationRegulatory circuitry governing fungal development, drug resistance, and disease.
Shapiro, R. S., Robbins, N., & Cowen, L. E. (2011) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00045-10 · Cited by 576 · see citing works
Genomic profiling of drug sensitivities via induced haploinsufficiency
Giaever, G. N., Shoemaker, D. D., Jones, T., Liang, H., Winzeler, E. A., Astromoff, A., & Davis, R. W. (1999) · Nature Genetics · doi:10.1038/6791 · Cited by 570 · see citing works
Shoemaker, D. D., Lashkari, D. A., Morris, D., Mittmann, M., & Davis, R. W. (1996) · Nature Genetics · doi:10.1038/ng1296-450 · Cited by 569 · see citing works
Combinations of antibiotics and nonantibiotic drugs enhance antimicrobial efficacy
Ejim, L., Farha, M. A., Falconer, S. B., Wildenhain, J., Coombes, B. K., Tyers, M., Brown, E. D., & Wright, G. D. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.559 · Cited by 525 · see citing works
MipZ, a Spatial Regulator Coordinating Chromosome Segregation with Cell Division in Caulobacter
Thanbichler, M. R., & Shapiro, L. (2006) · Cell · doi:10.1016/j.cell.2006.05.038 · Cited by 517 · see citing works
Roemer, T., Jiang, B., Davison, J., Ketela, T. W., Veillette, K., Breton, A., Tandia, F., Linteau, A., Sillaots, S., Marta, C., et al. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03697.x · Cited by 513 · see citing works
Self-citationWhy is big Pharma getting out of antibacterial drug discovery?
Projan, S. J. (2003) · Current Opinion in Microbiology · doi:10.1016/j.mib.2003.08.003 · Cited by 507 · see citing works
Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast
Giaever, G. N., Flaherty, P., Kumm, J., Proctor, M. J., Nislow, C., Jaramillo, D. F., Chu, A. M., Jordan, M. I., Arkin, A. P., & Davis, R. W. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307490100 · Cited by 506 · see citing works
Exploring the Mode-of-Action of Bioactive Compounds by Chemical-Genetic Profiling in Yeast
Parsons, A. B., López, A., Givoni, I. E., Williams, D. E., Gray, C. A., Porter, J., Chua, G., Sopko, R., Brost, R. L., Ho, C.-H., et al. (2006) · Cell · doi:10.1016/j.cell.2006.06.040 · Cited by 500 · see citing works
Self-citationA genome‐wide strategy for the identification of essential genes in Staphylococcus aureus
Forsyth, A., Haselbeck, R. J., Ohlsen, K. L., Yamamoto, R. T., Xu, H. H., Trawick, J. D., Wall, D., Wang, L., Brown‐Driver, V., Froelich, J. M., et al. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.02832.x · Cited by 488 · see citing works
Susceptibility testing of antimicrobials in liquid media
Amsterdam, D. (1996) · Medical Entomology and Zoology · Cited by 482 · see citing works
Biochemical and genetic analysis of the yeast proteome with a movable ORF collectionPreprint
Gelperin, D. M., White, M. A., Wilkinson, M. L., Kon, Y., Kung, L. A., Wise, K. J., Lopez-Hoyo, N., Jiang, L., Piccirillo, S., Yu, H., et al. (2005) · Genes & Development · doi:10.1101/gad.1362105 · Cited by 479 · see citing works
Lum, P. Y., Armour, C. D., Stepaniants, S. B., Cavet, G., Wolf, M. K., Butler, J. S., Hinshaw, J. C., Garnier, P., Prestwich, G. D., Leonardson, A. S., et al. (2004) · Cell · doi:10.1016/s0092-8674(03)01035-3 · Cited by 471 · see citing works
Mani, R., St.Onge, R. P., Hartman, J. L., Giaever, G. N., & Roth, F. P. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712255105 · Cited by 471 · see citing works
Lomovskaya, O., & Bostian, K. A. (2006) · Biochemical Pharmacology · doi:10.1016/j.bcp.2005.12.008 · Cited by 461 · see citing works
An Inhibitor of FtsZ with Potent and Selective Anti-Staphylococcal Activity
Haydon, D. J., Stokes, N. R., Ure, R., Galbraith, G., Bennett, J. M., Brown, D. R., Baker, P. J., Barynin, V. V., Rice, D. W., Sedelnikova, S. E., et al. (2008) · Science · doi:10.1126/science.1159961 · Cited by 452 · see citing works
Inhibition of mycolic acid transport across the Mycobacterium tuberculosis plasma membrane
Grzegorzewicz, A. E., Pham, H., Gundi, V. A. K. B., Scherman, M. S., North, E. J., Hess, T., Jones, V., Gruppo, V., Born, S. E. M., Korduláková, J., et al. (2012) · Nature Chemical Biology · doi:10.1038/nchembio.794 · Cited by 442 · see citing works
An insight into the antifungal pipeline: selected new molecules and beyond
Ostrosky-Zeichner, L., Casadevall, A., Galgiani, J. N., Odds, F. C., & Rex, J. H. (2010) · Nature Reviews Drug Discovery · doi:10.1038/nrd3074 · Cited by 432 · see citing works
Cowen, L. E., Singh, S. D., Köhler, J. R., Collins, C., Zaas, A. K., Schell, W. A., Aziz, H., Mylonakis, E., Perfect, J. R., Whitesell, L., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0813394106 · Cited by 413 · see citing works
The Neglected Intrinsic Resistome of Bacterial Pathogens
Fajardo-Lubian, A., Martinez-Martín, N., Mercadillo, M., Galán, J. C., Ghysels, B., Matthijs, S., Cornélis, P., Wiehlmann, L., Tümmler, B., Baquero, F., et al. (2008) · PLoS ONE · doi:10.1371/journal.pone.0001619 · Cited by 368 · see citing works
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
Baryshnikova, A., Costanzo, M., Kim, Y., Ding, H., Koh, J., Toufighi, K., Youn, J.-Y., Ou, J., San Luis, B.-J., Bandyopadhyay, S., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1534 · Cited by 364 · see citing works
Self-citationHsp90 Governs Echinocandin Resistance in the Pathogenic Yeast Candida albicans via Calcineurin
Singh, S. D., Robbins, N., Zaas, A. K., Schell, W. A., Perfect, J. R., & Cowen, L. E. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000532 · Cited by 362 · see citing works
Akerley, B. J., Rubin, E. J., Novick, V. L., Amaya, K. R., Judson, N., & Mekalanos, J. J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.012602299 · Cited by 358 · see citing works
Calcineurin signaling in Saccharomyces cerevisiae: how yeast go crazy in response to stress.
Cyert, M. S. (2003) · Biochemical and Biophysical Research Communications · doi:10.1016/s0006-291x(03)01552-3 · Cited by 333 · see citing works
Type II fatty acid synthesis is not a suitable antibiotic target for Gram-positive pathogens
Brinster, S., Lamberet, G., Staels, B., Trieu‐Cuot, P., Gruss, A., & Poyart, C. (2009) · Nature · doi:10.1038/nature07772 · Cited by 318 · see citing works
Lipoprotein Cofactors Located in the Outer Membrane Activate Bacterial Cell Wall Polymerases
Paradis‐Bleau, C., Markovski, M., Uehara, T., Lupoli, T. J., Walker, S., Kahne, D. E., & Bernhardt, T. G. (2010) · Cell · doi:10.1016/j.cell.2010.11.037 · Cited by 313 · see citing works
Chaudhuri, R. R., Allen, A. G., Owen, P., Shalom, G., Stone, K. M., Harrison, M., Burgis, T. A., Lockyer, M. J., Garcı́a-Lara, J., Foster, S. J., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-291 · Cited by 309 · see citing works
Systematic exploration of synergistic drug pairs
Cokol, M., Chua, H. N., Tasan, M., Mutlu, B., Weinstein, Z., Suzuki, Y., Nergiz, M. E., Costanzo, M., Baryshnikova, A., Giaever, G. N., et al. (2011) · Molecular Systems Biology · doi:10.1038/msb.2011.71 · Cited by 308 · see citing works
Self-citationA complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1
de Berardinis, V., Vallenet, D., Castelli, V., Besnard‐Gonnet, M., Pinet, A., Cruaud, C., Samair, S., Lechaplais, C., Gyapay, G., Richez, C., et al. (2008) · Molecular Systems Biology · doi:10.1038/msb.2008.10 · Cited by 303 · see citing works
Quantitative phenotyping via deep barcode sequencingPreprint
Smith, A. M., Heisler, L. E., Mellor, J. C., Kaper, F., Thompson, M. J., Chee, M. S., Roth, F. P., Giaever, G. N., & Nislow, C. (2009) · Genome Research · doi:10.1101/gr.093955.109 · Cited by 297 · see citing works
Systematic Mapping of Genetic Interaction Networks
Dixon, S. J., Costanzo, M., Baryshnikova, A., Andrews, B., & Boone, C. M. (2008) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.073003.114751 · Cited by 290 · see citing works
Self-citationDiscovery research: the scientific challenge of finding new antibiotics
Livermore, D. M., on behalf of the British Society for Antimicrobial Chemotherapy Working Party on The Urgent Need: Regenerating Antibacterial Drug Discovery and Development, Blaser, M., Carrs, O., Cassell, G., Fishman, N., Guidos, R., Levy, S., Powers, J. H., Norrby, R., et al. (2011) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkr262 · Cited by 286 · see citing works
Liu, A., Tran, L., Becket, E., Lee, K., Chinn, L., Park, E. Y., Tran, K. P., & Miller, J. H. (2010) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00906-09 · Cited by 284 · see citing works
A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds
Ho, C. H., Magtanong, L., Barker, S. L., Gresham, D., Nishimura, S., Natarajan, P., Koh, J. L. Y., Porter, J., Gray, C. A., Andersen, R. J., et al. (2009) · Nature Biotechnology · doi:10.1038/nbt.1534 · Cited by 281 · see citing works
Self-citationSystematic identification of essential genes by in vitro mariner mutagenesis
Akerley, B. J., Rubin, E. J., Camilli, A., Lampe, D. J., Robertson, H. M., & Mekalanos, J. J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.15.8927 · Cited by 267 · see citing works
Stanley, S. A., Grant, S. S., Kawate, T., Iwase, N., Shimizu, M., Wivagg, C. N., Silvis, M. R., Kazyanskaya, E., Aquadro, J. A., Golas, A. J., et al. (2012) · ACS Chemical Biology · doi:10.1021/cb300151m · Cited by 252 · see citing works
Genome-Wide Fitness Test and Mechanism-of-Action Studies of Inhibitory Compounds in Candida albicans
Xu, D., Jiang, B., Ketela, T. W., Lemieux, S., Veillette, K., Martel, N., Davison, J., Sillaots, S., Trosok, S., Bachewich, C., et al. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030092 · Cited by 249 · see citing works
Self-citationBaltz, R. H. (2006) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-005-0077-9 · Cited by 248 · see citing works
Antibiotic adjuvants: multicomponent anti-infective strategies
Kalan, L., & Wright, G. D. (2011) · Expert Reviews in Molecular Medicine · doi:10.1017/s1462399410001766 · Cited by 246 · see citing works
Restoring Methicillin-Resistant Staphylococcus aureus Susceptibility to β-Lactam Antibiotics
Tan, C. M., Therien, A. G., Lu, J., Lee, S. H., Caron, A., Gill, C., Jacob, C. L., Benton-Perdomo, L., Monteiro, J. M., Pereira, P. M., et al. (2012) · Science Translational Medicine · doi:10.1126/scitranslmed.3003592 · Cited by 242 · see citing works
Self-citationEssential Gene Identification and Drug Target Prioritization in Aspergillus fumigatus
Hu, W., Sillaots, S., Lemieux, S., Davison, J., Kauffman, S., Breton, A., Linteau, A., Xin, C., Bowman, J., Becker, J., et al. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030024 · Cited by 237 · see citing works
Self-citationTamae, C., Liu, A., Kim, K. K., Sitz, D., Hong, J., Becket, E., Bui, A., Solaimani, P., Tran, K. P., Yang, H., et al. (2008) · Journal of Bacteriology · doi:10.1128/jb.01982-07 · Cited by 234 · see citing works
Inhibition of WTA Synthesis Blocks the Cooperative Action of PBPs and Sensitizes MRSA to β-Lactams
Farha, M. A., Leung, A. A. C., Sewell, E. W., D’Elia, M. A., Allison, S. E., Ejim, L. J., Pereira, P. M., Pinho, M. G., Wright, G. D., & Brown, E. D. (2012) · ACS Chemical Biology · doi:10.1021/cb300413m · Cited by 217 · see citing works
Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures
Pierce, S. E., Davis, R. W., Nislow, C., & Giaever, G. N. (2007) · Nature Protocols · doi:10.1038/nprot.2007.427 · Cited by 208 · see citing works
Tetracycline-Inducible Gene Expression and Gene Deletion in Candida albicans
Park, Y.-N., & Morschhäuser, J. (2005) · Eukaryotic Cell · doi:10.1128/ec.4.8.1328-1342.2005 · Cited by 205 · see citing works
An integrated platform of genomic assays reveals small-molecule bioactivities
Hoon, S. S., Smith, A. M., Wallace, I. M., Suresh, S., Miranda, M., Fung, E., Proctor, M. J., Shokat, K. M., Zhang, C., Davis, R. W., et al. (2008) · Nature Chemical Biology · doi:10.1038/nchembio.100 · Cited by 201 · see citing works
Towards a new tuberculosis drug: pyridomycin – nature's isoniazid
Hartkoorn, R. C., Sala, C., Neres, J., Pojer, F., Magnet, S., Mukherjee, R., Uplekar, S. M., Boy‐Röttger, S., Altmann, K., & Cole, S. T. (2012) · EMBO Molecular Medicine · doi:10.1002/emmm.201201689 · Cited by 188 · see citing works
Genetic Architecture of Intrinsic Antibiotic Susceptibility
Girgis, H. S., Hottes, A. K., & Tavazoie, S. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005629 · Cited by 178 · see citing works
Resistance of human fungal pathogens to antifungal drugs
Sanglard, D. (2002) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(02)00344-2 · Cited by 178 · see citing works
Antibiotics in Laboratory Medicine, 6th Edition
Mathers, A. J. (2015) · Clinical Infectious Diseases · doi:10.1093/cid/civ078 · Cited by 170 · see citing works
Del Poeta, M., Cruz, M. C., Cardenas, M. E., Perfect, J. R., & Heitman, J. (2000) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.44.3.739-746.2000 · Cited by 169 · see citing works
Feng, Y., Chen, C., Su, L., Hu, S., Yu, J. M., & Chiu, C. (2007) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2007.00086.x · Cited by 168 · see citing works
Lesage, G., Sdicu, A.-M., Ménard, P., Shapiro, J., Hussein, S., & Bussey, H. (2004) · Genetics · doi:10.1534/genetics.167.1.35 · Cited by 166 · see citing works
Nakayama, H., Mio, T., Nagahashi, S., Kokado, M., Arisawa, M., & Aoki, Y. (2000) · Infection and Immunity · doi:10.1128/iai.68.12.6712-6719.2000 · Cited by 157 · see citing works
Essentiality of FASII pathway for Staphylococcus aureus
Balemans, W., Lounis, N., Gilissen, R., Guillemont, J., Simmen, K., Andries, K., & Koul, A. (2010) · Nature · doi:10.1038/nature08667 · Cited by 154 · see citing works
Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life
Pace, N. R., Sapp, J., & Goldenfeld, N. D. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109716109 · Cited by 149 · see citing works
Confronting the challenges of natural product-based antifungal discovery
Roemer, T., Xu, D., Singh, S. B., Parish, C. A., Harris, G., Wang, H., Davies, J. E., & Bills, G. F. (2011) · Chemistry & Biology · doi:10.1016/j.chembiol.2011.01.009 · Cited by 147 · see citing works
Self-citationCaspofungin: the first in a new class of antifungal agents
Kartsonis, N. A., NIELSEN, J. B. K., & Douglas, C. M. (2003) · Drug Resistance Updates · doi:10.1016/s1368-7646(03)00064-5 · Cited by 146 · see citing works
Global Phenotypic Screening for Antimalarials
Guiguemde, W. A., Shelat, A. A., Garcia-Bustos, J., Diagana, T. T., Gamo, F., & Guy, R. K. (2012) · Chemistry & Biology · doi:10.1016/j.chembiol.2012.01.004 · Cited by 136 · see citing works
Pathway analysis of Candida albicans survival and virulence determinants in a murine infection model
Becker, J. M., Kauffman, S., Hauser, M., Huang, L.-Y., Lin, M. T.-Y., Sillaots, S., Jiang, B., Xu, D., & Roemer, T. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1009845107 · Cited by 135 · see citing works
Self-citationNew triazoles and echinocandins: mode of action, in vitro activity and mechanisms of resistance
Fera, M. T., Camera, E. L., & Sarro, A. D. (2009) · Expert Review of Anti-infective Therapy · doi:10.1586/eri.09.67 · Cited by 134 · see citing works
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae
Lesage, G., Shapiro, B. J., Specht, C. A., Sdicu, A., Ménard, P., Hussein, S., Tong, A. H. Y., Boone, C. M., & Bussey, H. (2005) · BMC Genetics · doi:10.1186/1471-2156-6-8 · Cited by 123 · see citing works
Self-citationHuber, J. L., Donald, R. G. K., Lee, S. H., Jarantow, L. W., Salvatore, M. J., Meng, X., Painter, R. E., Onishi, R., Occi, J., Dorso, K., et al. (2009) · Chemistry & Biology · doi:10.1016/j.chembiol.2009.05.012 · Cited by 116 · see citing works
Self-citationMünch, D., Roemer, T., Lee, S. H., Engeser, M., Sahl, H. G., & Schneider, T. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002509 · Cited by 114 · see citing works
Self-citationWright, G. D. (2010) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2010.497535 · Cited by 109 · see citing works
Reversal of resistance in microorganisms by help of non-antibiotics
Kristiansen, J. E., Hendricks, O., Delvin, T., Butterworth, T. S., Aagaard, L., Christensen, J. B., Flores, V. C., & Keyzer, H. (2007) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkm071 · Cited by 109 · see citing works
Yan, Z., Costanzo, M., Heisler, L. E., Paw, J., Kaper, F., Andrews, B., Boone, C. M., Giaever, G. N., & Nislow, C. (2008) · Nature Methods · doi:10.1038/nmeth.1231 · Cited by 105 · see citing works
Self-citationDonald, R. G. K., Skwish, S., Forsyth, A., Anderson, J. W., Zhong, T., Burns, C. M., Lee, S., Meng, X., LoCastro, L., Jarantow, L. W., et al. (2009) · Chemistry & Biology · doi:10.1016/j.chembiol.2009.07.004 · Cited by 98 · see citing works
Oh, J., Fung, E., Schlecht, U., Davis, R. W., Giaever, G. N., St.Onge, R. P., Deutschbauer, A. M., & Nislow, C. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001140 · Cited by 96 · see citing works
Yeast chemical genomics and drug discovery: an update
Hoon, S. S., St.Onge, R. P., Giaever, G. N., & Nislow, C. (2008) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2008.07.006 · Cited by 96 · see citing works
A Chemical Genomic Analysis of Decoquinate, a Plasmodium falciparum Cytochrome b Inhibitor
Nam, T., McNamara, C. W., Bopp, S. E. R., Dharia, N. V., Meister, S., Bonamy, G. M. C., Plouffe, D., Kato, N., McCormack, S., Bursulaya, B. D., et al. (2011) · ACS Chemical Biology · doi:10.1021/cb200105d · Cited by 95 · see citing works
Chitin Synthase Inhibitors as Antifungal Agents
Chaudhary, P. M., Tupe, S. G., & Deshpande, M. V. (2013) · Mini-Reviews in Medicinal Chemistry · doi:10.2174/138955713804805256 · Cited by 93 · see citing works
Genes Involved in Intrinsic Antibiotic Resistance of Acinetobacter baylyi
Gomez, M. J., & Neyfakh, A. A. (2006) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00579-06 · Cited by 88 · see citing works
Jiang, B., Xu, D., Allocco, J., Parish, C. A., Davison, J., Veillette, K., Sillaots, S., Hu, W., Rodriguez-Suarez, R. J., Trosok, S., et al. (2008) · Chemistry & Biology · doi:10.1016/j.chembiol.2008.02.016 · Cited by 82 · see citing works
Self-citationAntagonism of Chemical Genetic Interaction Networks Resensitize MRSA to β-Lactam Antibiotics
Lee, S. H., Jarantow, L. W., Wang, H., Sillaots, S., Cheng, H. S., Meredith, T. C., Thompson, J. R., & Roemer, T. (2011) · Chemistry & Biology · doi:10.1016/j.chembiol.2011.08.015 · Cited by 78 · see citing works
Self-citationBroadening the Spectrum of β-Lactam Antibiotics through Inhibition of Signal Peptidase Type I
Therien, A. G., Huber, J. L., Wilson, K. E., Beaulieu, P., Caron, A., Claveau, D., Deschamps, K., Donald, R. G. K., Galgoci, A. M., Gallant, M., et al. (2012) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00726-12 · Cited by 76 · see citing works
Flores, A. R., Parsons, L. M., & Pavelka, M. S. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.6.1892-1900.2005 · Cited by 67 · see citing works
Osmond, B. C., Specht, C. A., & Robbins, P. W. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.20.11206 · Cited by 66 · see citing works
Steinbach, W. J., Singh, N., Miller, J. L., Benjamin, D. K., Schell, W. A., Heitman, J., & Perfect, J. R. (2004) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.48.12.4922-4925.2004 · Cited by 66 · see citing works
Verwer, P. E. B., VanDuijn, M. M., Tavakol, M., Bakker‐Woudenberg, I. A. J. M., & van de Sande, W. W. J. (2011) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.05323-11 · Cited by 58 · see citing works
Bills, G. F., Platas, G., Overy, D. P., Collado, J., Fillola, A., Jiménez, M. R., Martı́n, J., del Val, A. G., Vicente, F., Tormo, J. R., et al. (2009) · Mycologia · doi:10.3852/08-163 · Cited by 56 · see citing works
Self-citationDepletion of the Squalene Synthase ( ERG9 ) Gene Does Not Impair Growth of Candida glabrata in Mice
Nakayama, H., Izuta, M., Nakayama, N., Arisawa, M., & Aoki, Y. (2000) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.44.9.2411-2418.2000 · Cited by 53 · see citing works
Xu, H. H., Trawick, J. D., Haselbeck, R. J., Forsyth, A., Yamamoto, R. T., Archer, R., Patterson, J., Allen, M., Froelich, J. M., Taylor, I., et al. (2010) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00308-10 · Cited by 51 · see citing works
Self-citationFukumoto, A., Kim, Y.-P., Hanaki, H., Shiomi, K., Tomoda, H., & Ōmura, S. (2008) · The Journal of Antibiotics · doi:10.1038/ja.2008.102 · Cited by 51 · see citing works
Compound Prioritization Methods Increase Rates of Chemical Probe Discovery in Model Organisms
Wallace, I. M., Urbanus, M. L., Luciani, G. M., Burns, A. R., Han, M. K. L., Wang, H., Arora, K., Heisler, L. E., Proctor, M. J., St.Onge, R. P., et al. (2011) · Chemistry & Biology · doi:10.1016/j.chembiol.2011.07.018 · Cited by 47 · see citing works
Self-citationSandovsky‐Losica, H., Shwartzman, R., Lahat, Y., & Segal, E. (2008) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkn216 · Cited by 42 · see citing works
Bijlsma, J. J. E., Burghout, P., Kloosterman, T. G., Bootsma, H. J., de Jong, A., Hermans, P. W. M., & Kuipers, O. P. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01900-06 · Cited by 41 · see citing works
In Vitro and In Vivo Effects of 14α-Demethylase ( ERG11 ) Depletion in Candida glabrata
Nakayama, H., Nakayama, N., Arisawa, M., & Aoki, Y. (2001) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.45.11.3037-3045.2001 · Cited by 39 · see citing works
Serizawa, M., Sekizuka, T., Okutani, A., Banno, S., Sata, T., Inoue, S., & Kuroda, M. (2010) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01405-09 · Cited by 34 · see citing works
Whither antibacterial drug discovery?
Projan, S. J. (2008) · Drug Discovery Today · doi:10.1016/j.drudis.2008.03.010 · Cited by 32 · see citing works
Meredith, T. C., Wang, H., Beaulieu, P., Gründling, A., & Roemer, T. (2012) · Mobile Genetic Elements · doi:10.4161/mge.21647 · Cited by 26 · see citing works
Self-citationParsimonious Discovery of Synergistic Drug Combinations
Severyn, B. S., Liehr, R. A., Wolicki, A., Nguyen, K. H., Hudak, E. M., Ferrer, M., Caldwell, J. S., Hermes, J. D., Li, J., & Tudor, M. (2011) · ACS Chemical Biology · doi:10.1021/cb2003225 · Cited by 26 · see citing works
Chemical Genomic Approaches to Study Model Microbes
Barker, C. A., Farha, M. A., & Brown, E. D. (2010) · Chemistry & Biology · doi:10.1016/j.chembiol.2010.05.010 · Cited by 22 · see citing works
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The re-emergence of natural products for drug discovery in the genomics era
Harvey, A. L., Edrada‐Ebel, R., & Quinn, R. J. (2015) · Nature Reviews Drug Discovery · doi:10.1038/nrd4510 · Cited by 2,601 · see citing works
A global genetic interaction network maps a wiring diagram of cellular function
Costanzo, M., VanderSluis, B., Koch, E. N., Baryshnikova, A., Pons, C., Tan, G., Wang, W., Usaj, M., Hanchard, J., Lee, S. D., et al. (2016) · Science · doi:10.1126/science.aaf1420 · Cited by 1,240 · see citing works
Self-citationTarget identification and mechanism of action in chemical biology and drug discovery
Schenone, M., Dančík, V., Wagner, B. K., & Clemons, P. A. (2013) · Nature Chemical Biology · doi:10.1038/nchembio.1199 · Cited by 1,107 · see citing works
Drug combinations: a strategy to extend the life of antibiotics in the 21st century
Tyers, M., & Wright, G. D. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-018-0141-x · Cited by 825 · see citing works
Antifungal Drug Resistance: Molecular Mechanisms in <i>Candida albicans</i> and Beyond
Lee, Y., Puumala, E., Robbins, N., & Cowen, L. E. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.0c00199 · Cited by 801 · see citing works
Combenefit: an interactive platform for the analysis and visualization of drug combinations
Veroli, G. Y. D., Fornari, C., Wang, D. Y. Q., Mollard, S., Bramhall, J. L., Richards, F. M., & Jodrell, D. I. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw230 · Cited by 736 · see citing works
Antifungal Drug Development: Challenges, Unmet Clinical Needs, and New Approaches
Roemer, T., & Krysan, D. J. (2014) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a019703 · Cited by 593 · see citing works
Self-citationExogenous Alanine and/or Glucose plus Kanamycin Kills Antibiotic-Resistant Bacteria
Peng, B., Su, Y., Li, H., Han, Y., Guo, C., Tian, Y., & Peng, X. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.01.008 · Cited by 486 · see citing works
How to bolster the antifungal pipeline
Denning, D. W., & Bromley, M. (2015) · Science · doi:10.1126/science.aaa6097 · Cited by 481 · see citing works
The rapid spread of carbapenem-resistant Enterobacteriaceae
Potter, R. F., D’Souza, A. W., & Dantas, G. A. (2016) · Drug Resistance Updates · doi:10.1016/j.drup.2016.09.002 · Cited by 408 · see citing works
Whole-genome sequencing to control antimicrobial resistance
Köser, C. U., Ellington, M. J., & Peacock, S. J. (2014) · Trends in Genetics · doi:10.1016/j.tig.2014.07.003 · Cited by 333 · see citing works
Antifungal Drugs: The Current Armamentarium and Development of New Agents
Robbins, N., Wright, G. D., & Cowen, L. E. (2016) · Microbiology Spectrum · doi:10.1128/microbiolspec.funk-0002-2016 · Cited by 271 · see citing works
Infection microenvironment-related antibacterial nanotherapeutic strategies
Wang, Z., Liu, X., Duan, Y., & Huang, Y. P. (2021) · Biomaterials · doi:10.1016/j.biomaterials.2021.121249 · Cited by 269 · see citing works
Tunable protein degradation in bacteria
Cameron, D. E., & Collins, J. J. (2014) · Nature Biotechnology · doi:10.1038/nbt.3053 · Cited by 255 · see citing works
Zhang, W., Huai, Y., Miao, Z., Qian, A., & Wang, Y. (2019) · Frontiers in Pharmacology · doi:10.3389/fphar.2019.00743 · Cited by 250 · see citing works
Combinatorial strategies for combating invasive fungal infections
Spitzer, M., Robbins, N., & Wright, G. D. (2016) · Virulence · doi:10.1080/21505594.2016.1196300 · Cited by 218 · see citing works
Large-scale exploration and analysis of drug combinations
Li, P., Huang, C., Fu, Y., Wang, J., Wu, Z., Ru, J., Zheng, C., Guo, Z., Chen, X., Zhou, W., et al. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv080 · Cited by 196 · see citing works
Yu, Q., Deng, T., Lin, F.-C., Zhang, B., & Zink, J. I. (2020) · ACS Nano · doi:10.1021/acsnano.0c01336 · Cited by 187 · see citing works
Novel Agents and Drug Targets to Meet the Challenges of Resistant Fungi
McCarthy, M. W., Kontoyiannis, D. P., Cornely, O. A., Perfect, J. R., & Walsh, T. J. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jix130 · Cited by 171 · see citing works
Antimicrobial lipopeptide tridecaptin A 1 selectively binds to Gram-negative lipid II
Cochrane, S. A., Findlay, B., Bakhtiary, A., Acedo, J. Z., Rodriguez-Lopez, E. M., Mercier, P., & Vederas, J. C. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1608623113 · Cited by 138 · see citing works
Challenges and strategies in drug delivery systems for treatment of pulmonary infections
Ho, D., Nichols, B. L. B., Edgar, K. J., Murgia, X., Loretz, B., & Lehr, C. (2019) · European Journal of Pharmaceutics and Biopharmaceutics · doi:10.1016/j.ejpb.2019.09.002 · Cited by 138 · see citing works
Combinatorial drug discovery in nanoliter droplets
Kulesa, A. B., Kehe, J., Hurtado, J. E., Tawde, P., & Blainey, P. C. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1802233115 · Cited by 135 · see citing works
β-Lactams against the Fortress of the Gram-Positive Staphylococcus aureus Bacterium
Fisher, J. F., & Mobashery, S. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.0c01010 · Cited by 127 · see citing works
Prediction of Synergism from Chemical-Genetic Interactions by Machine Learning
Wildenhain, J., Spitzer, M., Dolma, S., Jarvik, N., White, R., Roy, M. M., Griffiths, E., Bellows, D. S., Wright, G. D., & Tyers, M. (2015) · Cell Systems · doi:10.1016/j.cels.2015.12.003 · Cited by 122 · see citing works
Chemogenomics and orthology‐based design of antibiotic combination therapies
Chandrasekaran, S., Çakmak, M. Ç., Sahin, N., Yılancıoğlu, K., Kazan, H., Collins, J. J., & Cokol, M. (2016) · Molecular Systems Biology · doi:10.15252/msb.20156777 · Cited by 117 · see citing works
Lee, S. H., Wang, H., Labroli, M. A., Koseoglu, S., Zuck, P. D., Mayhood, T., Gill, C., Mann, P. A., Sher, X., Ha, S., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad7364 · Cited by 110 · see citing works
Self-citationFunctional annotation of chemical libraries across diverse biological processes
Piotrowski, J. S., Li, S. C., Deshpande, R., Simpkins, S. W., Nelson, J., Yashiroda, Y., Barber, J. M., Safizadeh, H., Wilson, E. H., Okada, H., et al. (2017) · Nature Chemical Biology · doi:10.1038/nchembio.2436 · Cited by 93 · see citing works
Self-citationParente-Rocha, J. A., Bailão, A. M., Amaral, A. C., Taborda, C. P., Paccez, J. D., Borges, C. L., & Pereira, M. (2017) · Mediators of Inflammation · doi:10.1155/2017/9870679 · Cited by 93 · see citing works
Understanding the Composition of Food Waste
Ogwu, M. C. (2019) · Advances in environmental engineering and green technologies book series · doi:10.4018/978-1-5225-7706-5.ch011 · Cited by 93 · see citing works
Constructing and deconstructing the bacterial cell wall
Fisher, J. F., & Mobashery, S. (2019) · Protein Science · doi:10.1002/pro.3737 · Cited by 93 · see citing works
Fu, C., Zhang, X., Veri, A. O., Iyer, K. R., Lash, E., Xue, A., Yan, H., Revie, N. M., Wong, C. J., Lin, Z., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26850-3 · Cited by 82 · see citing works
Self-citationWang, J., Wu, M., Huang, X., Wang, L., Zhang, S., Liu, H., & Zheng, J. (2022) · Database · doi:10.1093/database/baac030 · Cited by 82 · see citing works
Emerging peptide antibiotics with therapeutic potential
Upert, G., Luther, A., Obrecht, D., & Ermert, P. (2020) · Medicine in Drug Discovery · doi:10.1016/j.medidd.2020.100078 · Cited by 79 · see citing works
Affinity-based target identification for bioactive small molecules
Kawatani, M., & Osada, H. (2013) · MedChemComm · doi:10.1039/c3md00276d · Cited by 78 · see citing works
Liu, X., Li, Z., Wang, X., Chen, Y., Wu, F., Men, K., Xu, T., Luo, Y., & Yang, L. (2016) · International Journal of Nanomedicine · doi:10.2147/ijn.s107107 · Cited by 71 · see citing works
Nanomaterials for Biosensors and Implantable Biodevices
Luz, R. A. S., Iost, R. M., & Crespilho, F. N. (2012) · Springer eBooks · doi:10.1007/978-3-642-29250-7_2 · Cited by 65 · see citing works
Using adjuvants and environmental factors to modulate the activity of antimicrobial peptides
Walkenhorst, W. F. (2016) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2015.12.034 · Cited by 65 · see citing works
Wambaugh, M. A., Shakya, V. P. S., Lewis, A. J., Mulvey, M. A., & Brown, J. C. S. (2017) · PLOS Biology · doi:10.1371/journal.pbio.2001644 · Cited by 63 · see citing works
Zhang, F., Smolen, J. A., Zhang, S., Li, R., Shah, P. N., Cho, S., Wang, H., Raymond, J. E., Cannon, C. L., & Wooley, K. L. (2015) · Nanoscale · doi:10.1039/c4nr07103d · Cited by 62 · see citing works
Antiparasitic Chemotherapy: From Genomes to Mechanisms
Horn, D., & Duraisingh, M. T. (2013) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev-pharmtox-011613-135915 · Cited by 61 · see citing works
Deng, W., Fu, T., Zhang, Z., Jiang, X. Y., Xie, J., Sun, H., Hu, P., Ren, H., Zhou, P., Liu, Q., et al. (2020) · Emerging Microbes & Infections · doi:10.1080/22221751.2020.1740611 · Cited by 60 · see citing works
BIONIC: biological network integration using convolutions
Forster, D. T., Li, S. C., Yashiroda, Y., Yoshimura, M., Li, Z., Isuhuaylas, L. A. V., Itto‐Nakama, K., Yamanaka, D., Ohya, Y., Osada, H., et al. (2022) · Nature Methods · doi:10.1038/s41592-022-01616-x · Cited by 56 · see citing works
Self-citationdos Santos, B. S., da Silva, L. C. N., da Silva, T. D., Rodrigues, J. F. S., Grisotto, M. A. G., Correia, M. T. D. S., Napoleão, T. H., da Silva, M. V., & Paiva, P. M. G. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01466 · Cited by 58 · see citing works
Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis
Martínez-Jiménez, F., Papadatos, G., Yang, L., Wallace, I. M., Kumar, V. D., Pieper, U., Šali, A., Brown, J. R., Overington, J. P., & Martı́-Renom, M. A. (2013) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003253 · Cited by 55 · see citing works
Synthesis of Tridecaptin–Antibiotic Conjugates with in Vivo Activity against Gram-Negative Bacteria
Cochrane, S. A., Li, X., He, S., Yu, M., Wu, M., & Vederas, J. C. (2015) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b01578 · Cited by 54 · see citing works
Cochrane, S. A., Lohans, C. T., van Belkum, M. J., Bels, M. A., & Vederas, J. C. (2015) · Organic & Biomolecular Chemistry · doi:10.1039/c5ob00780a · Cited by 50 · see citing works
Advances in macrocyclic peptide-based antibiotics
Luther, A., Bisang, C., & Obrecht, D. (2017) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2017.08.006 · Cited by 48 · see citing works
Endless resistance. Endless antibiotics?
Fisher, J. F., & Mobashery, S. (2015) · MedChemComm · doi:10.1039/c5md00394f · Cited by 46 · see citing works
Innovative perspectives on the discovery of small molecule antibiotics
Cardona, S. T., Rahman, A. S. M. Z., & Nechcoff, J. N. (2025) · npj Antimicrobials and Resistance · doi:10.1038/s44259-025-00089-0 · Cited by 48 · see citing works
Zhao, X., Li, Z., & Kuipers, O. P. (2020) · Cell chemical biology · doi:10.1016/j.chembiol.2020.07.005 · Cited by 44 · see citing works
Hart, P. ‘., Kleijn, L. H. J., de Bruin, G., Oppedijk, S. F., Kemmink, J., & Martin, N. I. (2013) · Organic & Biomolecular Chemistry · doi:10.1039/c3ob42238k · Cited by 41 · see citing works
Cardona, S. T., Choy, M., & Hogan, A. M. (2017) · The Journal of Membrane Biology · doi:10.1007/s00232-017-9995-5 · Cited by 40 · see citing works
Unconventional Antibacterials and Adjuvants
Chang, M., Mahasenan, K. V., Hermoso, J. A., & Mobashery, S. (2021) · Accounts of Chemical Research · doi:10.1021/acs.accounts.0c00776 · Cited by 38 · see citing works
Concha, N. O., Huang, J., Bai, X., Benowitz, A. B., Brady, P. G., Grady, L. C., Kryn, L. H., Holmes, D. J., Ingraham, K. A., Jin, Q., et al. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b00746 · Cited by 37 · see citing works
Prediction of synergistic drug combinations
Weinstein, Z., Bender, A., & Cokol, M. (2017) · Current Opinion in Systems Biology · doi:10.1016/j.coisb.2017.05.005 · Cited by 37 · see citing works
Advances in fungal chemical genomics for the discovery of new antifungal agents
Xue, A., Robbins, N., & Cowen, L. E. (2020) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.14484 · Cited by 37 · see citing works
Searching for synergy in silico, in vitro and in vivo
Sucher, N. J. (2014) · Synergy · doi:10.1016/j.synres.2014.07.004 · Cited by 36 · see citing works
Fishovitz, J., Taghizadeh, N., Fisher, J. F., Chang, M., & Mobashery, S. (2015) · Journal of the American Chemical Society · doi:10.1021/jacs.5b01374 · Cited by 35 · see citing works
Key Residues in Octyl‐Tridecaptin A1 Analogues Linked to Stable Secondary Structures in the Membrane
Cochrane, S. A., Findlay, B., Vederas, J. C., & Ratemi, E. (2014) · ChemBioChem · doi:10.1002/cbic.201402024 · Cited by 35 · see citing works
Mount, H. O., Revie, N. M., Todd, R. T., Anstett, K., Collins, C., Costanzo, M., Boone, C., Robbins, N., Selmecki, A., & Cowen, L. E. (2018) · PLOS Genetics · doi:10.1371/journal.pgen.1007319 · Cited by 34 · see citing works
Self-citationFerrer-González, E., Kaul, M., Parhi, A. K., LaVoie, E. J., & Pilch, D. S. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00863-17 · Cited by 32 · see citing works
Use of genetic and chemical synthetic lethality as probes of complexity in bacterial cell systems
Klobucar, K., & Brown, E. D. (2017) · FEMS Microbiology Reviews · doi:10.1093/femsre/fux054 · Cited by 29 · see citing works
Cochrane, S. A., & Vederas, J. C. (2014) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2014.08.008 · Cited by 31 · see citing works
Chemogenomic Profiling of the Fungal Pathogen Candida albicans
Chen, Y., Mallick, J., Maqnas, A., Sun, Y., Choudhury, B. I., Côte, P., Yan, L., Ni, T., Li, Y., Zhang, D., et al. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02365-17 · Cited by 30 · see citing works
Iubatti, M., Gabas, I. M., Cavaco, L. M., Mood, E. H., Lim, E. W. K., Bonanno, F., Yavari, N., Brolin, C., & Nielsen, P. E. (2022) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.2c00089 · Cited by 28 · see citing works
Antifungal Drugs: The Current Armamentarium and Development of New Agents
Robbins, N., Wright, G. D., & Cowen, L. E. (2017) · ASM Press eBooks · doi:10.1128/9781555819583.ch44 · Cited by 26 · see citing works
FR171456 is a specific inhibitor of mammalian NSDHL and yeast Erg26p
Helliwell, S. B., Karkare, S., Bergdoll, M., Rahier, A., Leighton-Davis, J. R., Fioretto, C., Aust, T., Filipuzzi, I., Frederiksen, M. U., Gounarides, J., et al. (2015) · Nature Communications · doi:10.1038/ncomms9613 · Cited by 23 · see citing works
Total Synthesis and Stereochemical Assignment of the Antimicrobial Lipopeptide Cerexin A1
Cochrane, S. A., Surgenor, R. R., Khey, K. M. W., & Vederas, J. C. (2015) · Organic Letters · doi:10.1021/acs.orglett.5b02779 · Cited by 24 · see citing works
Recent Advances in Genome Editing Tools in Medical Mycology Research
Nargesi, S., Kaboli, S., Thekkiniath, J., Heidari, S., Keramati, F., Seyedmousavi, S., & Hedayati, M. T. (2021) · Journal of Fungi · doi:10.3390/jof7040257 · Cited by 22 · see citing works
Yow, H.-Y., Govindaraju, K., Lim, A. H., & Rahim, N. A. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.915355 · Cited by 22 · see citing works
Tan, S., Cho, K., & Nodwell, J. R. (2022) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2022.102473 · Cited by 22 · see citing works
Additivity and synergy between an antimicrobial peptide and inhibitory ions
Walkenhorst, W. F., Sundrud, J. N., & Laviolette, J. M. (2014) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2014.05.005 · Cited by 22 · see citing works
Genetic Approaches to Facilitate Antibacterial Drug DevelopmentPreprint
Schnappinger, D. (2015) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a021139 · Cited by 20 · see citing works
Genomic tools to profile antibiotic mode of action
Cardona, S. T., Selin, C., & Gislason, A. S. (2014) · Critical Reviews in Microbiology · doi:10.3109/1040841x.2013.866073 · Cited by 19 · see citing works
A Putative Bacterial ABC Transporter Circumvents the Essentiality of Signal Peptidase
Morisaki, J. H., Smith, P. A., Date, S. V., Kajihara, K. K., Truong, C.-L., Modrusan, Z. D., Yan, D., Kang, J., Xu, M. J., Shah, I. M., et al. (2016) · mBio · doi:10.1128/mbio.00412-16 · Cited by 19 · see citing works
Pang, C. N. I., Lai, Y.-W., Campbell, L. T., Chen, S. C.-A., Carter, D. A., & Wilkins, M. R. (2017) · Scientific Reports · doi:10.1038/srep40232 · Cited by 19 · see citing works
Zhao, X., Zhong, X., Yang, S., Deng, K., Liu, L., Song, X., Zou, Y., Li, L., Zhou, X. C., Jia, R., et al. (2023) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00010-23 · Cited by 19 · see citing works
Assay and recommendations for the detection of vapour‐phase‐mediated antimicrobial activities
Feyaerts, A. F., Mathé, L., Luyten, W. H. M. L., Tournu, H., Dyck, K. V., Broekx, L., & Dijck, P. V. (2017) · Flavour and Fragrance Journal · doi:10.1002/ffj.3400 · Cited by 17 · see citing works
Kim, D., Cho, S., Lee, K.-Y., Cheon, S., Yoon, H. J., Lee, J.-Y., Kim, D., Shin, K.-S., Koh, C., Koo, J. S., et al. (2020) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-020-03490-2 · Cited by 17 · see citing works
Wildenhain, J., Spitzer, M., Dolma, S., Jarvik, N., White, R., Roy, M. M., Griffiths, E., Bellows, D. S., Wright, G. D., & Tyers, M. (2016) · Scientific Data · doi:10.1038/sdata.2016.95 · Cited by 17 · see citing works
Buijs, N. P., Vlaming, H. C., van Haren, M. J., & Martin, N. I. (2022) · ChemBioChem · doi:10.1002/cbic.202200547 · Cited by 16 · see citing works
Predicting drug synergy for precision medicine using network biology and machine learning
Cüvitoğlu, A., Zhou, J., Huang, S., & Işık, Z. (2019) · Journal of Bioinformatics and Computational Biology · doi:10.1142/s0219720019500124 · Cited by 16 · see citing works
Double Orthogonal Click Reactions for the Development of Antimicrobial Peptide Nanotubes
González‐Freire, E., Novelli, F., Pérez‐Estévez, A., Seoane, R., Amorín, M., & Granja, J. R. (2020) · Chemistry - A European Journal · doi:10.1002/chem.202004127 · Cited by 15 · see citing works
Micro- and Nanoscale Approaches in Antifungal Drug Discovery
Willaert, R. (2018) · Fermentation · doi:10.3390/fermentation4020043 · Cited by 17 · see citing works
Halder, V., McDonnell, B., Uthayakumar, D., Usher, J., & Shapiro, R. S. (2020) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaa055 · Cited by 14 · see citing works
Javed, A., Slingerland, C. J., Wood, T. M., Martin, N. I., Broere, F., Weingarth, M. H., & Veldhuizen, E. J. A. (2023) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.2c00518 · Cited by 14 · see citing works
Yang, S., Pan, J., Yang, C., Labroli, M. A., Pan, W., Caldwell, J. P., Ha, S., Koseoglu, S., Xiao, J. C., Mayhood, T., et al. (2016) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2016.08.036 · Cited by 14 · see citing works
Self-citationUnveiling the Synergistic Interaction Between Liposomal Amphotericin B and Colistin
Teixeira‐Santos, R., Ricardo, E., Branco, R. J. F., Azevedo, M. M., Rodrigues, A. G., & Pina‐Vaz, C. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01439 · Cited by 14 · see citing works
Mohamed, H., Naz, T., Yang, J., Shah, A. M., Nazir, Y., & Song, Y. (2021) · Journal of Fungi · doi:10.3390/jof7121061 · Cited by 14 · see citing works
Calcineurin Inhibitors Synergize with Manogepix to Kill Diverse Human Fungal Pathogens
Liston, S. D., Whitesell, L., Kapoor, M., Shaw, K. J., & Cowen, L. E. (2022) · Journal of Fungi · doi:10.3390/jof8101102 · Cited by 12 · see citing works
Heslop-Harrison, G., Nakabayashi, K., Espinosa‐Ruíz, A., Robertson, F., Baines, R., Thompson, C. R. L., Hermann, K., Alabadı́, D., Leubner‐Metzger, G., & Williams, R. S. B. (2024) · Plant Communications · doi:10.1016/j.xplc.2024.100846 · Cited by 12 · see citing works
Genomic Approaches to Antifungal Drug Target Identification and Validation
Robbins, N., & Cowen, L. E. (2022) · Annual Review of Microbiology · doi:10.1146/annurev-micro-041020-094524 · Cited by 13 · see citing works
Antibacterial New Target Discovery: Sentinel Examples, Strategies, and Surveying Success
Sutterlin, H. A., Malinverni, J. C., Lee, S. H., Balibar, C. J., & Roemer, T. (2017) · Topics in medicinal chemistry · doi:10.1007/7355_2016_31 · Cited by 12 · see citing works
Self-citationBuilding a unified model for drug synergy analysis powered by large language models
Liu, T., Chu, T., Luo, X., & Zhao, H. (2025) · Nature Communications · doi:10.1038/s41467-025-59822-y · Cited by 14 · see citing works
Yoneda, A., Thänert, R., Burnham, C. D., & Dantas, G. A. (2019) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2019.105864 · Cited by 11 · see citing works
Melander, R. J., & Melander, C. (2017) · Topics in medicinal chemistry · doi:10.1007/7355_2017_10 · Cited by 11 · see citing works
Dual transposon sequencing profiles the genetic interaction landscape in bacteria
Zik, J. J., Price, M. N., Mayra, K. H. A., Santoso, A. A., Arkin, A. P., Deutschbauer, A. M., & Sham, L. (2025) · Science · doi:10.1126/science.adt7685 · Cited by 10 · see citing works
Hull, C. M., Purdy, N. J., & Moody, S. C. (2014) · Future Microbiology · doi:10.2217/fmb.13.160 · Cited by 10 · see citing works
Omics Technologies in the Plant–Microbe Interactions
Baştaş, K. K., & Kumar, A. (2023) · Microorganisms for sustainability · doi:10.1007/978-981-99-3947-3_13 · Cited by 10 · see citing works
Kaul, M., Ferrer-González, E., Mark, L., Parhi, A. K., LaVoie, E. J., & Pilch, D. S. (2022) · Medicinal Chemistry Research · doi:10.1007/s00044-022-02960-5 · Cited by 9 · see citing works
- Authors
- Roemer, T., & Boone, C.
- Affiliations
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- University of Toronto (CA)
- Corresponding author
- Roemer, Terry
- Boone, Charles
- ORCID
- Boone, Charles
- Venue
- Nature Chemical Biology
- Published
- 2013-03-18
- Volume
- 9
- Issue
- 4
- Pages
- 222-231
- ISSN
- 1552-4450 (ISSN-L)
- 1552-4469
- OpenAlex
- W2085719025
- Semantic Scholar
- a4baefb4f35813be6ec8cc6c076833402fcc8f24
- Cited by
- 159
- References
- 126
- Citations by year
- 2026: 1 · 2025: 6 · 2024: 9 · 2023: 8 · 2022: 13 · 2021: 8 · 2020: 15 · 2019: 9 · 2018: 10 · 2017: 18 · 2016: 19 · 2015: 19 · 2014: 16 · 2013: 7 · 2012: 1
- FWCI
- 22.28
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Chemical Biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Canadian Institutes of Health Research (MOP-57830)
- Topics
- Physical Sciences › Computer Science › Computational Theory and Mathematics › Computational Drug Discovery Methods
- Health Sciences › Medicine › Pharmacology › Microbial Natural Products and Biosynthesis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- antimicrobial drug discovery, drug synergy, synthetic lethality, genetic interaction networks, drug resistance, yeast model, druggable targets
- MeSH terms
- Anti-Bacterial Agents, Antifungal Agents, Bacteria, Drug Synergism, Genotype, Humans, Phenotype, Yeasts, Genomics, Small Molecule Libraries, Validation Studies as Topic, Drug Discovery, High-Throughput Screening Assays, Molecular Targeted Therapy
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