Exploration of Essential Gene Functions via Titratable Promoter Alleles
Open accessAbstract
Nearly 20% of yeast genes are required for viability, hindering genetic analysis with knockouts. We created promoter-shutoff strains for over two-thirds of all essential yeast genes and subjected them to morphological analysis, size profiling, drug sensitivity screening, and microarray expression profiling. We then used this compendium of data to ask which phenotypic features characterized different functional classes and used these to infer potential functions for uncharacterized genes. We identified genes involved in ribosome biogenesis (HAS1, URB1, and URB2), protein secretion (SEC39), mitochondrial import (MIM1), and tRNA charging (GSN1). In addition, apparent negative feedback transcriptional regulation of both ribosome biogenesis and the proteasome was observed. We furthermore show that these strains are compatible with automated genetic analysis. This study underscores the importance of analyzing mutant phenotypes and provides a resource to complement the yeast knockout collection.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Essential genes participated in ~5-fold more negative and positive interactions than nonessential genes.
“In general, essential genes participated in ~5-fold more negative and positive interactions than nonessential genes, confirming previous estimates (Fig. 5A)(24).”
From A global genetic interaction network maps a wiring diagram of cellular function (2016) · cites this paper as [24]
Essential genes are major hubs and form the basic scaffold of the global genetic interaction network.
“First, consistent with the results of our previous smaller scale surveys (1, 24), essential genes are major hubs and form the basic scaffold of the global genetic interaction network.”
From A global genetic interaction network maps a wiring diagram of cellular function (2016) · cites this paper as [24]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206 · see citing works
Neural networks for pattern recognition
Bishop, C. (1994) · Choice Reviews Online · doi:10.5860/choice.31-5500 · Cited by 18,537 · see citing works
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 12,617 · see citing works
Functional organization of the yeast proteome by systematic analysis of protein complexes
Gavin, A., Böesche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A., Cruciat, C., et al. (2002) · Nature · doi:10.1038/415141a · Cited by 4,729 · see citing works
A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., et al. (2000) · Nature · doi:10.1038/35001009 · Cited by 4,706 · see citing works
Functional profiling of the Saccharomyces cerevisiae genome
Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B., et al. (2002) · Nature · doi:10.1038/nature00935 · Cited by 4,316 · see citing works
Self-citationGlobal analysis of protein localization in budding yeast
Huh, W.-K., Falvo, J. V., Gerke, L. C., Carroll, A. S., Howson, R. W., Weissman, J. S., & O'Shea, E. K. (2003) · Nature · doi:10.1038/nature02026 · Cited by 4,248 · cited 1× · see citing works
“the nucleolus (Huh et al., 2003) ,”
Global analysis of protein expression in yeast
Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., & Weissman, J. S. (2003) · Nature · doi:10.1038/nature02046 · Cited by 3,750 · see citing works
Yang, Y., Dudoit, S., Luu, P., Lin, D., Peng, V., Ngai, J., & Speed, T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.4.e15 · Cited by 3,722 · see citing works
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Ho, Y., Gruhler, A., Heilbut, A. M., Bader, G. D., Moore, L., Adams, S., Millar, A., Taylor, P. P., Bennett, K. L., Boutilier, K., et al. (2002) · Nature · doi:10.1038/415180a · Cited by 3,573 · see citing works
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., & Sakaki, Y. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.061034498 · Cited by 3,566 · see citing works
Functional Discovery via a Compendium of Expression Profiles
Hughes, T. R., Marton, M. J., Jones, A. R., Roberts, C. J., Stoughton, R. B., Armour, C. D., Bennett, H. A., Coffey, E. M., Dai, H. A., He, Y. D., et al. (2000) · Cell · doi:10.1016/s0092-8674(00)00015-5 · Cited by 2,534 · see citing works
Self-citationKnowledge-based analysis of microarray gene expression data by using support vector machines
Brown, M. P. S., Noble, W. S., Lin, D. M., Cristianini, N., Sugnet, C. W., Furey, T. S., Ares, M., & Haussler, D. H. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.1.262 · Cited by 2,310 · see citing works
Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants
Tong, A. H. Y., Evangelista, M., Parsons, A. B., Xu, H., Bader, G. D., Pagé, N., Robinson, M., Raghibizadeh, S., Hogue, C. W. V., Bussey, H., et al. (2001) · Science · doi:10.1126/science.1065810 · Cited by 2,138 · see citing works
Self-citationGlobal Mapping of the Yeast Genetic Interaction Network
Tong, A. H. Y., Lesage, G., Bader, G. D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G. F., Brost, R. L., Chang, M., et al. (2004) · Science · doi:10.1126/science.1091317 · Cited by 2,070 · see citing works
Self-citationSequencing and comparison of yeast species to identify genes and regulatory elements
Kellis, M., Patterson, N. J., Endrizzi, M. G., Birren, B. W., & Lander, E. S. (2003) · Nature · doi:10.1038/nature01644 · Cited by 1,731 · see citing works
Genetic Control of the Cell Division Cycle in Yeast
Hartwell, L. H., Culotti, J. G., Pringle, J. R., & Reid, B. J. (1974) · Science · doi:10.1126/science.183.4120.46 · Cited by 1,567 · see citing works
The Yeast Nuclear Pore Complex
Rout, M. P., Aitchison, J. D., Suprapto, A., Hjertaas, K., Zhao, Y., & Chait, B. T. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.148.4.635 · Cited by 1,403 · see citing works
A Concise Guide to cDNA Microarray Analysis
Hegde, P. S., Qi, R., Abernathy, K., Gay, C. G., Dharap, S. S., Gaspard, R. M., Hughes, J. E., Snesrud, E. C., Lee, N., & Quackenbush, J. F. (2000) · BioTechniques · doi:10.2144/00293bi01 · Cited by 949 · see citing works
The proteome of Saccharomyces cerevisiae mitochondria
Sickmann, A., Reinders, J., Wagner, Y., Joppich, C., Zahedi, R. P., Meyer, H. E., Schönfisch, B., Perschil, I., Chacińska, A., Guiard, B., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2135385100 · Cited by 895 · see citing works
Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting
Cliften, P. F., Sudarsanam, P., Desikan, A., Fulton, L. A., Fulton, B., Majors, J. E., Waterston, R., Cohen, B. A., & Johnston, M. (2003) · Science · doi:10.1126/science.1084337 · Cited by 805 · see citing works
A Bayesian missing value estimation method for gene expression profile data
Oba, S., Sato, M.-A., Takemasa, I., Monden, M., Matsubara, K., & Ishii, S. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg287 · Cited by 755 · see citing works
Systematic Identification of Pathways That Couple Cell Growth and Division in Yeast
Jorgensen, P., Nishikawa, J. L., Breitkreutz, B., & Tyers, M. (2002) · Science · doi:10.1126/science.1070850 · Cited by 753 · see citing works
Subcellular localization of the yeast proteomePreprint
Kumar, A., Agarwal, S., Heyman, J. A., Matson, S., Heidtman, M. I., Piccirillo, S., Umansky, L., Drawid, A., Jansen, R., Liu, Y., et al. (2002) · Genes & Development · doi:10.1101/gad.970902 · Cited by 737 · see citing works
Issel‐Tarver, L., Christie, K., Dolinski, K. J., Andrada, R., Balakrishnan, R., Ball, C. A., Binkley, G., Dong, S., Dwight, S. S., Fisk, D. G., et al. (2002) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(02)50972-1 · Cited by 672 · see citing works
Garí, E., Piedrafita, L., Aldea, M., & Herrero, E. (1997) · Yeast · doi:10.1002/(sici)1097-0061(199707)13:9 · Cited by 669 · see citing works
Genetic Control of the Cell-Division Cycle in Yeast, I. Detection of Mutants
Hartwell, L. H., Culotti, J. G., & Reid, B. J. (1970) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.66.2.352 · Cited by 576 · see citing works
Genomic profiling of drug sensitivities via induced haploinsufficiency
Giaever, G. N., Shoemaker, D. D., Jones, T., Liang, H., Winzeler, E. A., Astromoff, A., & Davis, R. W. (1999) · Nature Genetics · doi:10.1038/6791 · Cited by 570 · see citing works
Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast
Giaever, G. N., Flaherty, P., Kumm, J., Proctor, M. J., Nislow, C., Jaramillo, D. F., Chu, A. M., Jordan, M. I., Arkin, A. P., & Davis, R. W. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307490100 · Cited by 506 · see citing works
Lum, P. Y., Armour, C. D., Stepaniants, S. B., Cavet, G., Wolf, M. K., Butler, J. S., Hinshaw, J. C., Garnier, P., Prestwich, G. D., Leonardson, A. S., et al. (2004) · Cell · doi:10.1016/s0092-8674(03)01035-3 · Cited by 481 · see citing works
Self-citationExploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
Gasch, A. P., & Eisen, M. B. (2002) · Genome biology · doi:10.1186/gb-2002-3-11-research0059 · Cited by 475 · see citing works
Fatica, A., & Tollervey, D. W. (2002) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(02)00336-8 · Cited by 446 · see citing works
Normalization for cDNA microarry data
Yang, J. Y. H., Dudoit, S., Luu, P., & Speed, T. P. (2001) · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · doi:10.1117/12.427982 · Cited by 442 · see citing works
FunSpec: a web-based cluster interpreter for yeast
Robinson, M. D., Grigull, J., Mohammad, N., & Hughes, T. R. (2002) · BMC Bioinformatics · doi:10.1186/1471-2105-3-35 · Cited by 404 · see citing works
Self-citationHigh-Definition Macromolecular Composition of Yeast RNA-Processing Complexes
Krogan, N. J., Peng, W., Cagney, G., Robinson, M. D., Haw, R., Zhong, G., Guo, X., Zhang, X., Canadien, V., Richards, D. P., et al. (2004) · Molecular Cell · doi:10.1016/s1097-2765(04)00003-6 · Cited by 380 · see citing works
Self-citationMaturation of cellular Fe–S proteins: an essential function of mitochondria
Lill, R., & Kispal, G. (2000) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)01589-9 · Cited by 358 · see citing works
Wu, L. F., Hughes, T. R., Davierwala, A. P., Robinson, M. D., Stoughton, R. B., & Altschuler, S. J. (2002) · Nature Genetics · doi:10.1038/ng906 · Cited by 349 · see citing works
Self-citationHeat-Inducible Degron: a Method for Constructing Temperature-Sensitive Mutants
Dohmen, R. J., Wu, P., & Varshavsky, A. J. (1994) · Science · doi:10.1126/science.8122109 · Cited by 348 · see citing works
Maturation of cellular Fe-S proteins: an essential function of mitochondria
Gray, H. B. (2000) · Cited by 307 · see citing works
Upc2p and Ecm22p, Dual Regulators of Sterol Biosynthesis in <i>Saccharomyces cerevisiae</i>
Vik, Å., & Rine, J. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.19.6395-6405.2001 · Cited by 277 · see citing works
Mitochondrial proteins essential for viability mediate protein import into yeast mitochondria
Baker, K. P., & Schatz, G. (1991) · Nature · doi:10.1038/349205a0 · Cited by 275 · see citing works
Assigning Function to Yeast Proteins by Integration of Technologies
Hazbun, T. R., Malmström, L., Anderson, S., Graczyk, B., Fox, B., Riffle, M. E., Sundin, B. A., Aranda, J. D., McDonald, W. H., Chiu, C.-H., et al. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00476-3 · Cited by 263 · see citing works
Birrell, G. W., Brown, J. A. L., Wu, H. I., Giaever, G. N., Chu, A. M., Davis, R. W., & Brown, J. M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.132275199 · Cited by 255 · see citing works
Functional proteomic identification of DNA replication proteins by induced proteolysis in vivo
Kanemaki, M. T., Sánchez‐Díaz, A., Gambus, A., & Labib, K. P. M. (2003) · Nature · doi:10.1038/nature01692 · Cited by 254 · see citing works
A Panoramic View of Yeast Noncoding RNA Processing
Peng, W.-T., Robinson, M. D., Mnaimneh, S., Krogan, N. J., Cagney, G., Morris, Q., Davierwala, A. P., Grigull, J., Yang, X., Zhang, W., et al. (2003) · Cell · doi:10.1016/s0092-8674(03)00466-5 · Cited by 246 · see citing works
Self-citationSimos, G., Segref, A., Fasiolo, F., Hellmuth, K., Shevchenko, A. A., Mann, M., & Hurt, E. C. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00927.x · Cited by 229 · see citing works
Fleming, J., Lightcap, E. S., Sadis, S., Thoroddsen, V., Bulawa, C., & Blackman, R. K. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.032516399 · Cited by 198 · see citing works
Multiple sorting pathways between the late Golgi and the vacuole in yeast
Conibear, E., & Stevens, T. H. (1998) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/s0167-4889(98)00058-5 · Cited by 195 · see citing works
Molecular cloning, structure and expression of the yeast proliferating cell nuclear antigen gene
Bauer, G. A., & Burgers, M. J. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.2.261 · Cited by 190 · see citing works
Ssf1p Prevents Premature Processing of an Early Pre-60S Ribosomal Particle
Fatica, A., Cronshaw, A. D., Dlakić, M., & Tollervey, D. W. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00458-6 · Cited by 171 · see citing works
Cosson, P., Démollière, C., Hennecke, S., Duden, R., & Letourneur, F. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00528.x · Cited by 139 · see citing works
Ben‐Yehuda, S., Dix, I., RUSSELL, C. S., McGarvey, M., Beggs, J. D., & Kupiec, M. (2000) · Genetics · doi:10.1093/genetics/156.4.1503 · Cited by 119 · see citing works
The Specificities of Four Yeast Dihydrouridine Synthases for Cytoplasmic tRNAs
Xing, F., Hiley, S. L., Hughes, T. R., & Phizicky, E. M. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m401221200 · Cited by 113 · see citing works
Self-citationAsparagine-linked glycosylation in Saccharomyces cerevisiae: genetic analysis of an early step.
Barnes, G., Hansen, W. J., Holcomb, C. L., & Rine, J. (1984) · Molecular and Cellular Biology · doi:10.1128/mcb.4.11.2381 · Cited by 112 · see citing works
Hughes, T. R. (2002) · Functional & Integrative Genomics · doi:10.1007/s10142-002-0059-1 · Cited by 104 · see citing works
Self-citationAndag, U., Neumann, T., & Schmitt, H. D. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m105833200 · Cited by 96 · see citing works
Reilly, B., Kraynack, B. A., VanRheenen, S. M., & Waters, M. G. (2001) · Molecular Biology of the Cell · doi:10.1091/mbc.12.12.3783 · Cited by 88 · see citing works
Autoregulation in the Biosynthesis of Ribosomes
Zhao, Y., Sohn, J., & Warner, J. R. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.23.2.699-707.2003 · Cited by 78 · see citing works
Emery, B., de la Cruz, J., Ročak, S., Deloche, O., & Linder, P. (2004) · Molecular Microbiology · doi:10.1111/j.1365-2958.2003.03973.x · Cited by 77 · see citing works
Kressler, D., Doère, M., Rojo, M., & Linder, P. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.12.8633 · Cited by 62 · see citing works
de Aldana, C. R. V., Wek, R. C., San-Segundo, P. A., Truesdell, A. G., & Hinnebusch, A. G. (1994) · Molecular and Cellular Biology · doi:10.1128/mcb.14.12.7920-7932.1994 · Cited by 59 · see citing works
Using yeast to place human genes in functional categories
Zhang, N., Osborn, M. J., Gitsham, P., Yen, K., Miller, J., & Oliver, S. G. (2003) · Gene · doi:10.1016/s0378-1119(02)01142-3 · Cited by 52 · see citing works
Mutational analysis of Cak1p, an essential protein kinase that regulates cell cycle progression
Chun, K. T., & Goebl, M. G. (1997) · Molecular and General Genetics MGG · doi:10.1007/s004380050580 · Cited by 26 · see citing works
Biochemistry, cell biology and molecular biology of lipids ofSaccharomyces cerevisiae
Daum, G., Lees, N. D., Bard, M., & Dickson, R. (1998) · Yeast · doi:10.1002/(sici)1097-0061(199812)14:16
Flagged first, then by citations
Research works printed but not linked: 3
- [45]45. Oba, S. ∙ Sato, M. ∙ Takemasa, I. ... A Bayesian missing value estimation method Bioinformatics. 2003; 19:2088-2096 Crossref Scopus (582) PubMed Google Scholar
- [48]48. Robinson, M.D. ∙ Grigull, J. ∙ Mohammad, N. ... FunSpeca web-based cluster interpreter for yeast BMC Bioinformatics. 2002; 3:35 Crossref Scopus (330) PubMed Google Scholar
- [50]50. Sachs, L. Applied Statistics.Springer-Verlag, Berlin, 1982 Crossref Google Scholar
Cited by
Sorted by citations
A global genetic interaction network maps a wiring diagram of cellular function
Costanzo, M., VanderSluis, B., Koch, E. N., Baryshnikova, A., Pons, C., Tan, G., Wang, W., Usaj, M., Hanchard, J., Lee, S. D., et al. (2016) · Science · doi:10.1126/science.aaf1420 · Cited by 1,240 · see citing works
Self-citationSgs1 Helicase and Two Nucleases Dna2 and Exo1 Resect DNA Double-Strand Break Ends
Zhu, Z., Chung, W.-H., Shim, E. Y., Lee, S. E., & Ira, G. (2008) · Cell · doi:10.1016/j.cell.2008.08.037 · Cited by 1,041 · see citing works
Tuning genetic control through promoter engineering
Alper, H. S., Fischer, C. R., Nevoigt, E., & Stephanopoulos, G. N. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504604102 · Cited by 894 · see citing works
Gene essentiality and synthetic lethality in haploid human cells
Blomen, V. A., Májek, P., Jae, L. T., Bigenzahn, J. W., Nieuwenhuis, J., Staring, J., Sacco, R., van Diemen, F. R., Olk, N., Stukalov, A., et al. (2015) · Science · doi:10.1126/science.aac7557 · Cited by 857 · see citing works
Schuldiner, M., Collins, S. R., Thompson, N. J., Denic, V., Bhamidipati, A., Punna, T., Ihmels, J., Andrews, B., Boone, C., Greenblatt, J. F., et al. (2005) · Cell · doi:10.1016/j.cell.2005.08.031 · Cited by 870 · see citing works
Self-citationMitochondrial protein import: from proteomics to functional mechanisms
Schmidt, O., Pfanner, N., & Meisinger, C. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2959 · Cited by 717 · see citing works
Mapping Pathways and Phenotypes by Systematic Gene Overexpression
Sopko, R., Huang, D., Preston, N., Chua, G., Papp, B., Kafadar, K. A., Snyder, M., Oliver, S. G., Cyert, M., Hughes, T. R., et al. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.12.011 · Cited by 650 · see citing works
Self-citationExploring genetic interactions and networks with yeast
Boone, C., Bussey, H., & Andrews, B. J. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2085 · Cited by 661 · see citing works
Efflux-Mediated Antifungal Drug Resistance
Cannon, R. D., Lamping, E., Holmes, A. R., Niimi, K., Baret, P. V., Keniya, M. V., Tanabe, K., Niimi, M., Goffeau, A., & Monk, B. C. (2009) · Clinical Microbiology Reviews · doi:10.1128/cmr.00051-08 · Cited by 608 · see citing works
Progress in Metabolic Engineering of Saccharomyces cerevisiae
Nevoigt, E. (2008) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00025-07 · Cited by 597 · see citing works
Mechanisms of Haploinsufficiency Revealed by Genome-Wide Profiling in Yeast
Deutschbauer, A. M., Jaramillo, D. F., Proctor, M., Kumm, J., Hillenmeyer, M. E., Davis, R. W., Nislow, C., & Giaever, G. (2005) · Genetics · doi:10.1534/genetics.104.036871 · Cited by 535 · see citing works
A comprehensive strategy enabling high-resolution functional analysis of the yeast genome
Breslow, D. K., Cameron, D. M., Collins, S. R., Schuldiner, M., Stewart-Ornstein, J., Newman, H. W., Braun, S. J., Madhani, H. D., Krogan, N. J., & Weissman, J. S. (2008) · Nature Methods · doi:10.1038/nmeth.1234 · Cited by 517 · see citing works
Self-citationThe GET Complex Mediates Insertion of Tail-Anchored Proteins into the ER Membrane
Schuldiner, M., Metz, J., Schmid, V., Denic, V., Rakwalska, M., Schmitt, H. D., Schwappach, B., & Weissman, J. S. (2008) · Cell · doi:10.1016/j.cell.2008.06.025 · Cited by 522 · see citing works
Synthetic Genetic Array Analysis in Saccharomyces cerevisiae
Tong, A. H. Y., & Boone, C. M. (2005) · Humana Press eBooks · doi:10.1385/1-59259-958-3:171 · Cited by 489 · see citing works
Self-citationThe dependence of viral RNA replication on co-opted host factors
Nagy, P. D., & Pogany, J. (2011) · Nature Reviews Microbiology · doi:10.1038/nrmicro2692 · Cited by 447 · see citing works
Jerónimo, C., Forget, D., Bouchard, A., Li, Q., Chua, G., Poitras, C., Thérien, C., Bergeron, D., Bourassa, S., Greenblatt, J., et al. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.06.027 · Cited by 444 · see citing works
Self-citationSystematic humanization of yeast genes reveals conserved functions and genetic modularity
Kachroo, A. H., Laurent, J. M., Yellman, C. M., Meyer, A. G., Wilke, C. O., & Marcotte, E. M. (2015) · Science · doi:10.1126/science.aaa0769 · Cited by 423 · see citing works
Genetic reconstruction of a functional transcriptional regulatory network
Hu, Z., Killion, P. J., & Iyer, V. R. (2007) · Nature Genetics · doi:10.1038/ng2012 · Cited by 415 · see citing works
Systematic exploration of essential yeast gene function with temperature-sensitive mutants
Li, Z., Vizeacoumar, F. J., Bahr, S., Li, J., Warringer, J., Vizeacoumar, F. S., Min, R., VanderSluis, B., Bellay, J., DeVit, M. J., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1832 · Cited by 404 · see citing works
Self-citationControlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor
Ehrt, S. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni013 · Cited by 383 · see citing works
Park, S.-H., Kukushkin, Y., Gupta, R., Chen, T., Konagai, A., Hipp, M. S., Hayer-Hartl, M. K., & Hartl, F. U. (2013) · Cell · doi:10.1016/j.cell.2013.06.003 · Cited by 358 · see citing works
A Role for Phosphatidic Acid in the Formation of “Supersized” Lipid Droplets
Fei, W., Shui, G., Zhang, Y., Krahmer, N., Ferguson, C., Kapterian, T. S., Lin, R. C. Y., Dawes, I. W., Brown, A. J., Li, P., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002201 · Cited by 358 · see citing works
Trait Variation in Yeast Is Defined by Population History
Warringer, J., Zörgö, E., Cubillos, F. A., Zia, A., Gjuvsland, A. B., Simpson, J. T., Forsmark, A., Durbin, R. M., Omholt, S. W., Louis, E. J., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002111 · Cited by 338 · see citing works
Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks
di Bernardo, D., Thompson, M. J., Gardner, T. S., Chobot, S. E., Eastwood, E. L., Wojtovich, A. P., Elliott, S. J., Schaus, S. E., & Collins, J. J. (2005) · Nature Biotechnology · doi:10.1038/nbt1075 · Cited by 347 · see citing works
25 Yeast Genetic Strain and Plasmid Collections
Entian, K., & Kötter, P. (2007) · Methods in microbiology · doi:10.1016/s0580-9517(06)36025-4 · Cited by 310 · see citing works
Systematic Mapping of Genetic Interaction Networks
Dixon, S. J., Costanzo, M., Baryshnikova, A., Andrews, B., & Boone, C. M. (2008) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.073003.114751 · Cited by 290 · see citing works
Self-citationEmerging and evolving concepts in gene essentiality
Rancati, G. I., Moffat, J., Typas, A., & Pavelka, N. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.74 · Cited by 272 · see citing works
Self-citationTunable and reversible drug control of protein production via a self-excising degron
Chung, H. K., Jacobs, C. L., Huo, Y., Yang, J., Krumm, S. A., Plemper, R. K., Tsien, R. Y., & Lin, M. Z. (2015) · Nature Chemical Biology · doi:10.1038/nchembio.1869 · Cited by 233 · see citing works
The synthetic genetic interaction spectrum of essential genes
Davierwala, A. P., Haynes, J., Li, Z., Brost, R. L., Robinson, M. D., Yu, L. X., Mnaimneh, S., Ding, H., Zhu, H., Chen, Y., et al. (2005) · Nature Genetics · doi:10.1038/ng1640 · Cited by 221 · see citing works
Self-citationBen‐Aroya, S., Coombes, C. E., Kwok, T., O’Donnell, K. A., Boeke, J. D., & Hieter, P. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.02.021 · Cited by 213 · see citing works
Synthetic Genetic Array (SGA) Analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Baryshnikova, A., Costanzo, M., Dixon, S. J., Vizeacoumar, F. J., Myers, C. L., Andrews, B., & Boone, C. M. (2010) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(10)70007-0 · Cited by 201 · see citing works
Self-citationOne library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy
Yofe, I., Weill, U., Meurer, M., Chuartzman, S. G., Zalckvar, E., Goldman, O., Ben‐Dor, S., Schütze, C., Wiedemann, N., Knop, M., et al. (2016) · Nature Methods · doi:10.1038/nmeth.3795 · Cited by 202 · see citing works
Reversible protein aggregation is a protective mechanism to ensure cell cycle restart after stress
Saad, S., Cereghetti, G., Feng, Y., Picotti, P., Peter, M., & Dechant, R. C. (2017) · Nature Cell Biology · doi:10.1038/ncb3600 · Cited by 186 · see citing works
RSC Mobilizes Nucleosomes To Improve Accessibility of Repair Machinery to the Damaged Chromatin
Shim, E. Y., Hong, S. J., Oum, J.-H., Yanez, Y., Zhang, Y., & Lee, S. E. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01956-06 · Cited by 183 · see citing works
Zhao, R., Kakihara, Y., Gribun, A., Huen, J., Yang, G., Khanna, M., Costanzo, M., Brost, R. L., Boone, C. M., Hughes, T. R., et al. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200709061 · Cited by 185 · see citing works
Self-citationIdentifying transcription factor functions and targets by phenotypic activation
Chua, G., Morris, Q., Sopko, R., Robinson, M. D., Ryan, O. W., Chan, E. T., Frey, B. J., Andrews, B., Boone, C. M., & Hughes, T. R. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605140103 · Cited by 183 · see citing works
Self-citationFang, N. N., Chan, G. T., Zhu, M., Comyn, S. A., Persaud, A. K., Deshaies, R. J., Rotin, D., Gsponer, J., & Mayor, T. (2014) · Nature Cell Biology · doi:10.1038/ncb3054 · Cited by 179 · see citing works
Cryo-EM structure of the mitochondrial protein-import channel TOM complex at near-atomic resolution
Tucker, K., & Park, E. (2019) · Nature Structural & Molecular Biology · doi:10.1038/s41594-019-0339-2 · Cited by 161 · see citing works
Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics
Li, Z., Lee, I., Moradi, E. K., Hung, N., Johnson, A. M., & Marcotte, E. M. (2009) · PLoS Biology · doi:10.1371/journal.pbio.1000213 · Cited by 176 · see citing works
Self-citationEssence of life: essential genes of minimal genomes
Juhas, M., Eberl, L., & Glass, J. I. (2011) · Trends in Cell Biology · doi:10.1016/j.tcb.2011.07.005 · Cited by 178 · see citing works
Assembly of the PtdIns 4-kinase Stt4 complex at the plasma membrane requires Ypp1 and Efr3
Baird, D., Stefan, C. J., Audhya, A., Weys, S., & Emr, S. D. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200804003 · Cited by 168 · see citing works
Stirling, P. C., Bloom, M. S., Solanki-Patil, T., Smith, S. N., Sipahimalani, P., Li, Z., Kofoed, M., Ben‐Aroya, S., Myung, K., & Hieter, P. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002057 · Cited by 166 · see citing works
Self-citationWang, R., & Nagy, P. D. (2008) · Cell Host & Microbe · doi:10.1016/j.chom.2008.02.005 · Cited by 167 · see citing works
Yeast as a Model Host to Explore Plant Virus-Host Interactions
Nagy, P. D. (2008) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.121407.093958 · Cited by 166 · see citing works
Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L
Huber, A., French, S. L., Tekotte, H., Yerlikaya, S., Ståhl, M., Perepelkina, M. P., Tyers, M., Rougemont, J., Beyer, A. L., & Loewith, R. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.221 · Cited by 166 · see citing works
Role of Essential Genes in Mitochondrial Morphogenesis inSaccharomyces cerevisiae
Altmann, K., & Westermann, B. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e05-07-0678 · Cited by 165 · see citing works
Tam41 Is a CDP-Diacylglycerol Synthase Required for Cardiolipin Biosynthesis in Mitochondria
Tamura, Y., Harada, Y., Nishikawa, S., Yamano, K., Kamiya, M., Shiota, T., Kuroda, T., Kuge, O., Sesaki, H., Imai, K., et al. (2013) · Cell Metabolism · doi:10.1016/j.cmet.2013.03.018 · Cited by 163 · see citing works
Fendt, S., Buescher, J. M., Rudroff, F., Picotti, P., Zamboni, N., & Sauer, U. (2010) · Molecular Systems Biology · doi:10.1038/msb.2010.11 · Cited by 159 · see citing works
Systems-level antimicrobial drug and drug synergy discovery
Roemer, T., & Boone, C. (2013) · Nature Chemical Biology · doi:10.1038/nchembio.1205 · Cited by 159 · see citing works
Self-citationCreamer, T. J., Darby, M. M., Jamonnak, N., Schaughency, P., Hao, H., Wheelan, S. J., & Corden, J. L. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002329 · Cited by 160 · see citing works
Biogenesis of the Mitochondrial TOM Complex
Becker, T., Pfannschmidt, S., Guiard, B., Stojanovski, D., Milenkovic, D., Kutik, S., Pfanner, N., Meisinger, C., & Wiedemann, N. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m706997200 · Cited by 153 · see citing works
Boczonadi, V., Müller, J. S., Pyle, A., Munkley, J., Dor, T., Quartararo, J., Ferrero, I., Karcagi, V., Giunta, M., Polvikoski, T., et al. (2014) · Nature Communications · doi:10.1038/ncomms5287 · Cited by 149 · see citing works
Regulation of Yeast NRD1 Expression by Premature Transcription Termination
Arigo, J. T., Carroll, K. L., Ames, J. M., & Corden, J. L. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.02.005 · Cited by 144 · see citing works
GeneWeaver: a web-based system for integrative functional genomics
Baker, E. J., Jay, J. J., Bubier, J. A., Langston, M. A., & Chesler, E. J. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr968 · Cited by 140 · see citing works
Ergosterol content specifies targeting of tail-anchored proteins to mitochondrial outer membranes
Krumpe, K., Frumkin, I., Herzig, Y., Rimon, N., Özbalci, C., Brügger, B., Rapaport, D., & Schuldiner, M. (2012) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-12-0994 · Cited by 137 · see citing works
Biogenesis of β-barrel membrane proteins of mitochondria
Paschen, S. A., Neupert, W., & Rapaport, D. (2005) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2005.08.009 · Cited by 137 · see citing works
Dechant, R. C., Saad, S., Ibáñez, A. J., & Peter, M. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.06.002 · Cited by 135 · see citing works
A prototrophic deletion mutant collection for yeast metabolomics and systems biology
Mülleder, M., Capuano, F., Pir, P., Christen, S., Sauer, U., Oliver, S. G., & Ralser, M. (2012) · Nature Biotechnology · doi:10.1038/nbt.2442 · Cited by 133 · see citing works
Li, Z., Barajas, D., Panavas, T., Herbst, D. A., & Nagy, P. D. (2008) · Journal of Virology · doi:10.1128/jvi.00702-08 · Cited by 132 · see citing works
Self-citationNedea, E. C., Nalbant, D., Xia, D., Theoharis, N. T., Suter, B., Richardson, C. J., Tatchell, K., Kislinger, T., Greenblatt, J. F., & Nagy, P. L. (2008) · Molecular Cell · doi:10.1016/j.molcel.2007.12.031 · Cited by 128 · see citing works
Self-citationCharging it up: global analysis of protein phosphorylation
Ptacek, J., & Snyder, M. P. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.08.005 · Cited by 128 · see citing works
Aoki, T., Ichimura, S., Itoh, A., Kuramoto, M., Shinkawa, T., Isobe, T., & Tagaya, M. (2009) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-11-1104 · Cited by 125 · see citing works
van Bakel, H., Tsui, K., Gebbia, M., Mnaimneh, S., Hughes, T. R., & Nislow, C. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003479 · Cited by 124 · see citing works
Self-citationIn Vivo Robustness Analysis of Cell Division Cycle Genes in Saccharomyces cerevisiae
Moriya, H., Shimizu‐Yoshida, Y., & Kitano, H. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020111 · Cited by 125 · see citing works
Down-Regulating Sphingolipid Synthesis Increases Yeast Lifespan
Huang, X., Liu, J., & Dickson, R. C. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002493 · Cited by 124 · see citing works
Altmann, K., Frank, M., Neumann, D., Jakobs, S., & Westermann, B. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200709099 · Cited by 124 · see citing works
Jiang, Y., Servienė, E., Gál, J., Panavas, T., & Nagy, P. D. (2006) · Journal of Virology · doi:10.1128/jvi.02686-05 · Cited by 122 · see citing works
Global Map of SUMO Function Revealed by Protein-Protein Interaction and Genetic Networks
Makhnevych, T., Sydorskyy, Y., Xin, X., Srikumar, T., Vizeacoumar, F. J., Jeram, S. M., Li, Z., Bahr, S., Andrews, B., Boone, C. M., et al. (2009) · Molecular Cell · doi:10.1016/j.molcel.2008.12.025 · Cited by 121 · see citing works
Self-citation16 High-Throughput Strain Construction and Systematic Synthetic Lethal Screening in
Tong, A. H. Y., & Boone, C. M. (2007) · Methods in microbiology · doi:10.1016/s0580-9517(06)36016-3 · Cited by 121 · see citing works
Self-citationA general lack of compensation for gene dosage in yeast
Springer, M., Weissman, J. S., & Kirschner, M. W. (2010) · Molecular Systems Biology · doi:10.1038/msb.2010.19 · Cited by 122 · see citing works
Multiple pathways in the integration of proteins into the mitochondrial outer membrane
Dukanovic, J., & Rapaport, D. (2010) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2010.06.021 · Cited by 120 · see citing works
Escobar‐Henriques, M., Westermann, B., & Langer, T. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200512079 · Cited by 119 · see citing works
Advanced Methods for High-Throughput Microscopy Screening of Genetically Modified Yeast Libraries
Cohen, Y., & Schuldiner, M. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-276-2_8 · Cited by 115 · see citing works
Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
Batada, N. N., Reguly, T., Breitkreutz, A., Boucher, L., Breitkreutz, B., Hurst, L. D., & Tyers, M. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050154 · Cited by 115 · see citing works
Cellular and mitochondrial remodeling upon defects in iron-sulfur protein biogenesis
Hausmann, A., Samans, B., Lill, R., & Mühlenhoff, U. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m705570200 · Cited by 111 · see citing works
Popov-Celeketic, J., Waizenegger, T., & Rapaport, D. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.12.006 · Cited by 111 · see citing works
Boutros, P. C., & Okey, A. B. (2005) · Briefings in Bioinformatics · doi:10.1093/bib/6.4.331 · Cited by 108 · see citing works
Genetic Interaction Networks: Toward an Understanding of Heritability
Baryshnikova, A., Costanzo, M., Myers, C. L., Andrews, B., & Boone, C. M. (2013) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-082509-141730 · Cited by 108 · see citing works
Self-citationNucleolar URB1 ensures 3′ ETS rRNA removal to prevent exosome surveillance
Shan, L., Xu, G., Yao, R.-W., Luan, P.-F., Huang, Y., Zhang, P.-H., Pan, Y.-H., Zhang, L., Gao, X., Li, Y., et al. (2023) · Nature · doi:10.1038/s41586-023-05767-5 · Cited by 109 · see citing works
Hulett, J. M., Lueder, F., Chan, N. C., Perry, A., Wolynec, P. P., Likić, V. A., Gooley, P. R., & Lithgow, T. J. (2008) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.12.021 · Cited by 109 · see citing works
Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae
Chemler, J. A., Yan, Y., & Koffas, M. A. G. (2006) · Microbial Cell Factories · doi:10.1186/1475-2859-5-20 · Cited by 109 · see citing works
Essential genes as antimicrobial targets and cornerstones of synthetic biology
Juhas, M., Eberl, L., & Church, G. M. (2012) · Trends in biotechnology · doi:10.1016/j.tibtech.2012.08.002 · Cited by 108 · see citing works
Raskin, D. M., Judson, N., & Mekalanos, J. J. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611650104 · Cited by 108 · see citing works
Analysis of Transcriptional Activation at a Distance in Saccharomyces cerevisiae
Dobi, K. C., & Winston, F. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00459-07 · Cited by 106 · see citing works
Kraynack, B. A., Chan, A., Rosenthal, E. H., Essid, M., Umansky, B., Waters, M. G., & Schmitt, H. D. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e05-01-0056 · Cited by 106 · see citing works
Efficient protein depletion by genetically controlled deprotection of a dormant N‐degron
Taxis, C., Stier, G., Spadaccini, R., & Knop, M. (2009) · Molecular Systems Biology · doi:10.1038/msb.2009.25 · Cited by 107 · see citing works
Максимова, Н. Р., Hara, K., Nikolaeva, I., Chun-Feng, T., Usui, T., Takagi, M., Nishihira, Y., Miyashita, A., Fujiwara, H., Oyama, T., et al. (2010) · Journal of Medical Genetics · doi:10.1136/jmg.2009.074815 · Cited by 106 · see citing works
Yan, Z., Costanzo, M., Heisler, L. E., Paw, J., Kaper, F., Andrews, B., Boone, C. M., Giaever, G. N., & Nislow, C. (2008) · Nature Methods · doi:10.1038/nmeth.1231 · Cited by 105 · see citing works
Self-citationCharacterization of a Dual Rac/Cdc42 Inhibitor MBQ-167 in Metastatic Cancer
Humphries‐Bickley, T., Castillo‐Pichardo, L., O'Farril, E. H., Borrero-García, L. D., Forestier-Román, I., Gerena, Y., Blanco, M., Rivera-Robles, M. J., Rodríguez-Medina, J. R., Cubano, L. A., et al. (2017) · Molecular Cancer Therapeutics · doi:10.1158/1535-7163.mct-16-0442 · Cited by 105 · see citing works
LAS1L interacts with the mammalian Rix1 complex to regulate ribosome biogenesis
Castle, C. D., Cassimere, E. K., & Denicourt, C. (2011) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-06-0530 · Cited by 105 · see citing works
Fadda, A. A., Ryten, M., Droll, D., Rojas, F., Färber, V., Haanstra, J. R., Merce, C., Bakker, B. M., Matthews, K. R., & CLAYTON, C. E. (2014) · Molecular Microbiology · doi:10.1111/mmi.12764 · Cited by 102 · see citing works
High-resolution network biology: connecting sequence with function
Ryan, C. J., Cimermančič, P., Szpiech, Z. A., Šali, A., Hernandez, R. D., & Krogan, N. J. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3574 · Cited by 98 · see citing works
Self-citationA Survey of Essential Gene Function in the Yeast Cell Division Cycle
Yu, L. X., Peña‐Castillo, L., Mnaimneh, S., Hughes, T. R., & Brown, G. W. (2006) · Molecular Biology of the Cell · doi:10.1091/mbc.e06-04-0368 · Cited by 102 · see citing works
Self-citationA fast and efficient translational control system for conditional expression of yeast genes
Kötter, P., Weigand, J. E., Meyer, B., Entian, K., & Suess, B. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp578 · Cited by 101 · see citing works
Confirmation of Organized Modularity in the Yeast Interactome
Bertin, N., Simonis, N., Dupuy, D., Cusick, M. E., Han, J. J., Fraser, H. B., Roth, F. P., & Vidal, M. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050153 · Cited by 100 · see citing works
Servienė, E., Jiang, Y., Cheng, C., Baker, J., & Nagy, P. D. (2006) · Journal of Virology · doi:10.1128/jvi.80.3.1231-1241.2006 · Cited by 99 · see citing works
Mutations in the Saccharomyces cerevisiae RPB1 Gene Conferring Hypersensitivity to 6-Azauracil
Malagón, F., Kireeva, M. L., Shafer, B. K., Lubkowska, L., Kashlev, M., & Strathern, J. N. (2006) · Genetics · doi:10.1534/genetics.105.052415 · Cited by 99 · see citing works
Simple is good: yeast models of neurodegeneration
Tenreiro, S., & Outeiro, T. F. (2010) · FEMS Yeast Research · doi:10.1111/j.1567-1364.2010.00649.x · Cited by 98 · see citing works
Structural characterization of Tip20p and Dsl1p, subunits of the Dsl1p vesicle tethering complex
Tripathi, A., Ren, Y., Jeffrey, P. D., & Hughson, F. M. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1548 · Cited by 98 · see citing works
Kopajtich, R., Murayama, K., Janecke, A., Haack, T. B., Breuer, M., Knisely, A. S., Harting, I., Ohashi, T., Okazaki, Y., WATANABE, D., et al. (2016) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2016.05.027 · Cited by 97 · see citing works
- Authors
- Mnaimneh, S., Davierwala, A. P., Haynes, J., Moffat, J., Peng, W.-T., Zhang, W., Yang, X., Pootoolal, J., Chua, G., Lopez, A., Trochesset, M., Morse, D., Krogan, N. J., Hiley, S. L., Li, Z., Morris, Q., Grigull, J., Mitsakakis, N., Roberts, C. J., Greenblatt, J. F., Boone, C., Kaiser, C. A., Andrews, B. J., & Hughes, T. R.
- Affiliations
- University of Toronto (CA)
- Massachusetts Institute of Technology (US)
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- Corresponding author
- Hughes, Timothy R
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2004-07
- Volume
- 118
- Issue
- 1
- Pages
- 31-44
- ISSN
- 0092-8674 (ISSN-L)
- OpenAlex
- W1974220691
- Cited by
- 604
- References
- 64
- Citations by year
- 2026: 6 · 2025: 11 · 2024: 17 · 2023: 15 · 2022: 22 · 2021: 21 · 2020: 14 · 2019: 17 · 2018: 17 · 2017: 21 · 2016: 23 · 2015: 26 · 2014: 30 · 2013: 28 · 2012: 32
- FWCI
- 14.21
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 3303 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- essential genes, Saccharomyces cerevisiae, gene function prediction, ribosome biogenesis, protein secretion, mitochondrial protein import, aminoacylation, proteasome, mutant phenotypes
- MeSH terms
- Alleles, Pharmaceutical Preparations, Genes, Fungal, Mitochondria, Models, Genetic, Promoter Regions, Genetic, Protein Processing, Post-Translational, Ribosomal Proteins, RNA, Transfer, Saccharomyces cerevisiae, Transcription, Genetic, Gene Expression Regulation, Fungal, Gene Deletion, Genes, Essential, Oligonucleotide Array Sequence Analysis, Gene Expression Profiling, Feedback, Physiological, Saccharomyces cerevisiae Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review