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N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
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We report here that fat mass and obesity-associated protein (FTO) has efficient oxidative demethylation activity targeting the abundant N6-methyladenosine (m(6)A) residues in RNA in vitro. FTO knockdown with siRNA led to increased amounts of m(6)A in mRNA, whereas overexpression of FTO resulted in decreased amounts of m(6)A in human cells. We further show the partial colocalization of FTO with nuclear speckles, which supports the notion that m(6)A in nuclear RNA is a major physiological substrate of FTO.
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“The m6A modification can be removed by erasers, mainly FTO and ALKBH5 [24,25].”
From IMPlications of IMP2 in RNA Biology and Disease (2025) · cites this paper as [24]
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“Although evidence points to an oncogenic role of FTO in AML 15 ,”
From The roles of DNA, RNA and histone methylation in ageing and cancer (2019) · cites this paper as [15]
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“In addition to TET enzymes, D2HG can inhibit the N6-methyladenosine (m6A) RNA demethylase fat mass and obesity associated protein (FTO), another α -KG-dependent dioxygenase 15 .”
From The roles of DNA, RNA and histone methylation in ageing and cancer (2019) · cites this paper as [15]
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Tudek, B., Zdżalik-Bielecka, D., Tudek, A., Kosicki, K., Fabisiewicz, A., & Speina, E. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.11.043 · Cited by 93
Qi, S., 戚, 树., Ma, J., 马, 俊., Wang, Z., 王, 震., Guo, L., 郭, 磊., Hou, Y., 侯, 毅., et al. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.748889 · Cited by 86
Epitranscriptomic regulation by m 6 A RNA methylation in brain development and diseases
Chokkalla, A. K., Mehta, S. L., & Vemuganti, R. (2020) · Journal of Cerebral Blood Flow & Metabolism · doi:10.1177/0271678x20960033 · Cited by 93
Circular RNAs’ cap-independent translation protein and its roles in carcinomas
He, L., Man, C., Xiang, S., Yao, L., Wang, X., & Fan, Y. (2021) · Molecular Cancer · doi:10.1186/s12943-021-01417-4 · Cited by 90
Singh, S., Sarma, D. K., Verma, V., Nagpal, R., & Kumar, M. (2023) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2023.09.064 · Cited by 96
Chen, A., Zhang, V. X., Zhang, Q., Sze, K. M., Tian, L., Huang, H., Wang, X., Lee, E., Lu, J., Lyu, X., et al. (2024) · Gut · doi:10.1136/gutjnl-2024-331903 · Cited by 89
“The first identified RNA demethylase, fat mass and obesity-associated protein (FTO), plays a pivotal role in regulating m6A modification 7 and has been”
Huang, C., Chen, W., & Wang, X. (2022) · Genes & Diseases · doi:10.1016/j.gendis.2022.04.014 · Cited by 103
Castro-Hernández, R., Berulava, T., Metelova, M., Epple, R., Centeno, T. P., Richter, J., Kaurani, L., Pradhan, R., Sakib, M. S., Burkhardt, S., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2204933120 · Cited by 88
RNA Modification in the Immune System
Han, D., & Xu, M. M. (2023) · Annual Review of Immunology · doi:10.1146/annurev-immunol-101921-045401 · Cited by 90
FTO Is Expressed in Neurones throughout the Brain and Its Expression Is Unaltered by Fasting
McTaggart, J. S., Lee, S., Iberl, M., Church, C., Cox, R., & Ashcroft, F. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027968 · Cited by 92
ALKBH4-dependent demethylation of actin regulates actomyosin dynamics
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Self-citationFluorescent RNA Aptamers as a Tool to Study RNA-Modifying Enzymes
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“Here we describe a novel HTS approach to identify inhibitors of RNA-modifying enzymes, and the use of this assay to identify inhibitors of fat mass and obesity-associated protein (FTO), an enzyme that exhibits m6A-demethylating activity (Jia et al., 2011).”
BackgroundMethodResultInfluentialStructural Chemistry of Human RNA Methyltransferases
Schapira, M. (2015) · ACS Chemical Biology · doi:10.1021/acschembio.5b00781 · Cited by 89
DNA N6-methyladenine in metazoans: functional epigenetic mark or bystander?
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Self-citationMettl14 is required for mouse postimplantation development by facilitating epiblast maturation
Meng, T., Lu, X., Guo, L., Hou, G.-M., Ma, X., Li, Q., Huang, L., Fan, L., Zhao, Z., Ou, X., et al. (2018) · The FASEB Journal · doi:10.1096/fj.201800719r · Cited by 87
“…(FTO) and ALKBH5 have been shown to act as m 6 A demethylases, it is commonly accepted that m 6 A modifications are reversible in mammalian cells (Jia et al., 2011; Zheng et al., 2013), evoking the biological implications of the dynamic m 6 A modification, which is incompletely understood in…”
Self-citationLi, H., Song, Y., He, Z., Chen, X., Wu, X., Li, X., Bai, X., Liú, W., Li, B., Wang, S., et al. (2018) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2018.00139 · Cited by 89
“…demethylation of nucleotide bases, and the knockdown of FTO leads to increased amounts of m6A in mRNA, whereas overexpression of FTO results in Frontiers in Cellular Neuroscience | www.frontiersin.org 10 May 2018 | Volume 12 | Article 139 decreased amounts of m6A in human cells (Jia et al., 2011).”
MTCH2 promotes adipogenesis in intramuscular preadipocytes via an m 6 A‐YTHDF1‐dependent mechanism
Jiang, Q. L., Sun, B., Liu, Q., Cai, M., Wu, R., Wang, F., Yao, Y., Wang, Y., & Wang, X. (2018) · The FASEB Journal · doi:10.1096/fj.201801393rrr · Cited by 87
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Decreased ALKBH5, FTO, and YTHDF2 in Peripheral Blood Are as Risk Factors for Rheumatoid Arthritis
Luo, Q., Gao, Y., Zhang, L., Rao, J., Guo, Y., Huang, Z., & Li, J. (2020) · BioMed Research International · doi:10.1155/2020/5735279 · Cited by 87
The role of M6A modification in the regulation of tumor-related lncRNAs
Lan, Y., Liu, B., & Guo, H. (2021) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2021.04.002 · Cited by 86
Metadata
- Authors
- Jia, G., Fu, Y., Zhao, X., Dai, Q., Zheng, G., Yang, Y., Yi, C., Lindahl, T., Pan, T., Yang, Y.-G., & He, C.
- Affiliations
- University of Chicago (US)
- Chinese Academy of Sciences (CN)
- Cancer Research UK (GB)
- Corresponding author
- He, Chuan
- Venue
- Nature Chemical Biology
- Published
- 2011-10-16
- Volume
- 7
- Issue
- 12
- Pages
- 885-887
- ISSN
- 1552-4450 (ISSN-L)
- 1552-4469
- PMC
- PMC3218240
- OpenAlex
- W2071930821
- Cited by
- 4,106
- References
- 27
- Citations by year
- 2026: 272 · 2025: 416 · 2024: 473 · 2023: 489 · 2022: 546 · 2021: 544 · 2020: 341 · 2019: 217 · 2018: 218 · 2017: 159 · 2016: 109 · 2015: 107 · 2014: 94 · 2013: 67 · 2012: 45
- FWCI
- 26.98
- Type
- journal article
- Language
- en
- Update notices
- erratum (2012-11-26)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Chemical Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of General Medical Sciences (GM071440, R01GM071440, R01GM088599, GM088599)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Keywords
- N6-methyladenosine, m6A demethylation, FTO, nuclear RNA, RNA modification, oxidative demethylation, nuclear speckles, obesity, RNA metabolism
- MeSH terms
- Alpha-Ketoglutarate-Dependent Dioxygenase FTO, Adenosine, Cell Nucleus, HeLa Cells, Humans, Methylation, Obesity, Oxidation-Reduction, Proteins, RNA, Messenger, Substrate Specificity
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