Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 1,161

The DOI matches its Crossref record; 62 of the 62 references it cites were found in a registry or an index.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

Open access
Liu, Shengyi, Liu, Yumei, Yang, Xinhua, Tong, Chaobo, Edwards, David, Parkin, Isobel A. P., Zhao, Meixia, Ma, Jianxin, Yu, Jingyin, Huang, Shunmou, Wang, Xiyin, Wang, Junyi, Lu, Kun, Fang, Zhiyuan, Bancroft, Ian, Yang, Tae-Jin, Hu, Qiong, Wang, Xinfa, Yue, Zhen, Li, Haojie, Yang, Linfeng, Wu, Jian, Zhou, Qing, Wang, Wanxin, King, Graham J, Pires, J. Chris, Lu, Changxin, Wu, Zhangyan, Sampath, Perumal, Wang, Zhuo, Guo, Hui, Pan, Shengkai, Yang, Limei, Min, Jiumeng, Zhang, Dong, Jin, Dianchuan, Li, Wanshun, Belcram, Harry, Tu, Jinxing, Guan, Mei, Qi, Cunkou, Du, Dezhi, Li, Jiana, Jiang, Liangcai, Batley, Jacqueline, Sharpe, Andrew G, Park, Beom-Seok, Ruperao, Pradeep, Cheng, Feng, Waminal, Nomar Espinosa, Huang, Yin, Dong, Caihua, Wang, Li, Li, Jingping, Hu, Zhiyong, Zhuang, Mu, Huang, Yi, Huang, Junyan, Shi, Jiaqin, Mei, Desheng, Liu, Jing, Lee, Tae-Ho, Wang, Jinpeng, Jin, Huizhe, Li, Zaiyun, Li, Xun, Zhang, Jiefu, Xiao, Lu, Zhou, Yongming, Liu, Zhongsong, Liu, Xuequn, Qin, Rui, Tang, Xu, Liu, Wenbin, Wang, Yupeng, Zhang, Yangyong, Lee, Jonghoon, Kim, Hyun Hee, Denoeud, France, Xu, Xun, Liang, Xinming, Hua, Wei, Wang, Xiaowu, Wang, Jun, Chalhoub, Boulos, Paterson, Andrew H·2014·Nature Communications
DOI 10.1038/ncomms4930
Open this paper in CoChat — free account

Abstract

Polyploidization has provided much genetic variation for plant adaptive evolution, but the mechanisms by which the molecular evolution of polyploid genomes establishes genetic architecture underlying species differentiation are unclear. Brassica is an ideal model to increase knowledge of polyploid evolution. Here we describe a draft genome sequence of Brassica oleracea, comparing it with that of its sister species B. rapa to reveal numerous chromosome rearrangements and asymmetrical gene loss in duplicated genomic blocks, asymmetrical amplification of transposable elements, differential gene co-retention for specific pathways and variation in gene expression, including alternative splicing, among a large number of paralogous and orthologous genes. Genes related to the production of anticancer phytochemicals and morphological variations illustrate consequences of genome duplication and gene divergence, imparting biochemical and morphological variation to B. oleracea. This study provides insights into Brassica genome evolution and will underpin research into the many important crops in this genus. Brassica oleracea is plant species comprising economically important vegetable crops. Here, the authors report the draft genome sequence of B. oleracea and, through a comparative analysis with the closely related B. rapa, reveal insights into Brassicaevolution and divergence of interspecific genomes and intraspecific subgenomes.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/ncomms4930

Cites

62 of 62 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Cited by

See all 1,161

Metadata

Authors
Liu, S., Liu, Y., Yang, X., Tong, C., Edwards, D., Parkin, I. A. P., Zhao, M., Ma, J., Yu, J., Huang, S., Wang, X., Wang, J., Lu, K., Fang, Z., Bancroft, I., Yang, T.-J., Hu, Q., Wang, X., Yue, Z., Li, H., Yang, L., Wu, J., Zhou, Q., Wang, W., King, G. J., Pires, J. C., Lu, C., Wu, Z., Sampath, P., Wang, Z., Guo, H., Pan, S., Yang, L., Min, J., Zhang, D., Jin, D., Li, W., Belcram, H., Tu, J., Guan, M., Qi, C., Du, D., Li, J., Jiang, L., Batley, J., Sharpe, A. G., Park, B.-S., Ruperao, P., Cheng, F., Waminal, N. E., Huang, Y., Dong, C., Wang, L., Li, J., Hu, Z., Zhuang, M., Huang, Y., Huang, J., Shi, J., Mei, D., Liu, J., Lee, T.-H., Wang, J., Jin, H., Li, Z., Li, X., Zhang, J., Xiao, L., Zhou, Y., Liu, Z., Liu, X., Qin, R., Tang, X., Liu, W., Wang, Y., Zhang, Y., Lee, J., Kim, H. H., Denoeud, F., Xu, X., Liang, X., Hua, W., Wang, X., Wang, J., Chalhoub, B., & Paterson, A. H.
Venue
Nature Communications
Publisher
Springer Science and Business Media LLC
Published
2014-05-23
Volume
5
Issue
1
Pages
3930-3930
ISSN
2041-1723 (ISSN-L)
DOI
10.1038/ncomms4930
OpenAlex
W1991552254
Cited by
1,161
References
62
FWCI
106.68
Type
journal article
Language
en
Open access
hybrid

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.