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Cited by 434

The DOI matches its Crossref record; 43 of the 43 references it cites were found in a registry or an index.

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

Open access
Wang, Yaping, Lu, Ying, Zhang, Yong, Ning, Zemin, Li, Yan, Zhao, Qiang, Lu, Hengyun, Huang, Rong, Xia, Xiaoqin, Feng, Qi, Liang, Xufang, Liu, Kunyan, Zhang, Lei, Lu, Tingting, Huang, Tao, Fan, Danlin, Weng, Qijun, Zhu, Chuanrang, Lu, Yiqi, Li, Wenjun, Wen, Ziruo, Zhou, Congcong, Tian, Qilin, Kang, Xiaojun, Shi, Mijuan, Zhang, Wanting, Jang, Songhun, Du, Fukuan, He, Shan, Liao, Lanjie, Li, Yongming, Gui, Bin, He, Huihui, Ning, Zhen, Yang, Cheng, He, Libo, Luo, Lifei, Yang, Rui, Luo, Qiong, Liu, Xiaochun, Li, Shuisheng, Huang, Wen, Xiao, Ling, Lin, Haoran, Han, Bin, Zhu, Zuoyan·2015·Nature Genetics
DOI 10.1038/ng.3280
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Abstract

Bin Han and colleagues report the draft genome sequence of the grass carp Ctenopharyngodon idellus, a major commercially farmed species of freshwater fish. Analyses of the grass carp genome identify lineage-specific duplications that may have contributed to the adaptation of this species to a vegetarian diet. The grass carp is an important farmed fish, accounting for ∼16% of global freshwater aquaculture, and has a vegetarian diet. Here we report a 0.9-Gb draft genome of a gynogenetic female adult and a 1.07-Gb genome of a wild male adult. Genome annotation identified 27,263 protein-coding gene models in the female genome. A total of 114 scaffolds consisting of 573 Mb are anchored on 24 linkage groups. Divergence between grass carp and zebrafish is estimated to have occurred 49–54 million years ago. We identify a chromosome fusion in grass carp relative to zebrafish and report frequent crossovers between the grass carp X and Y chromosomes. We find that transcriptional activation of the mevalonate pathway and steroid biosynthesis in liver is associated with the grass carp's adaptation from a carnivorous to an herbivorous diet. We believe that the grass carp genome could serve as an initial platform for breeding better-quality fish using a genomic approach.

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Metadata

Authors
Wang, Y., Lu, Y., Zhang, Y., Ning, Z., Li, Y., Zhao, Q., Lu, H., Huang, R., Xia, X., Feng, Q., Liang, X., Liu, K., Zhang, L., Lu, T., Huang, T., Fan, D., Weng, Q., Zhu, C., Lu, Y., Li, W., Wen, Z., Zhou, C., Tian, Q., Kang, X., Shi, M., Zhang, W., Jang, S., Du, F., He, S., Liao, L., Li, Y., Gui, B., He, H., Ning, Z., Yang, C., He, L., Luo, L., Yang, R., Luo, Q., Liu, X., Li, S., Huang, W., Xiao, L., Lin, H., Han, B., & Zhu, Z.
Venue
Nature Genetics
Publisher
Springer Science and Business Media LLC
Published
2015-05-04
Volume
47
Issue
6
Pages
625-631
ISSN
  • 1061-4036 (ISSN-L)
  • 1546-1718
DOI
10.1038/ng.3280
OpenAlex
W1513563151
Cited by
434
References
43
FWCI
16.21
Type
journal article
Language
en
Open access
hybrid

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