Reference-based phasing using the Haplotype Reference Consortium panel
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Genetic ancestry of samples was confirmed by principal components analysis and MDS values compared to 1000 Genome Project samples.
“Genetic ancestry of samples was confirmed by principal components analysis using the PLINK program99 and MDS (multidimensional scaling) values of study subjects were compared to those of 1000 Genome Project samples (Phase 3) (Supplementary Fig. 10d).”
From Genetic analysis of the human microglial transcriptome across brain regions, aging and disease pathologies (2022) · cites this paper as [99]
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“We and others have recently developed methods that achieve very high statistical phasing accuracy in cohorts comprising a large fraction of a population [8] or containing >100,000 samples [13, 14].”
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- Authors
- Loh, P.-R., Danecek, P., Palamara, P. F., Fuchsberger, C., A Reshef, Y., K Finucane, H., Schoenherr, S., Forer, L., McCarthy, S., Abecasis, G. R., Durbin, R., & L Price, A.
- Venue
- Nature Genetics
- Published
- 2016-10-03
- Volume
- 48
- Issue
- 11
- Pages
- 1443-1448
- ISSN
- 1061-4036
- 1546-1718
- PMC
- PMC5096458
- Cited by
- 1,894
- References
- 6
- Language
- en
- Licence
- www.springer.com/tdm (tdm)
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