Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes

Crystal structure of the nucleosome core particle at 2.8 Å resolution

Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., & Richmond, T. J. (1997) · Nature · doi:10.1038/38444 · Cited by 9,466 · see citing works

The biology of chromatin remodeling complexes.

Clapier, C. R., & Cairns, B. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.062706.153223 · Cited by 2,384 · see citing works

Histone H4-K16 Acetylation Controls Chromatin Structure and Protein Interactions

Shogren‐Knaak, M. A., Ishii, H., Sun, J.-M., Pazin, M. J., Davie, J., & Peterson, C. L. (2006) · Science · doi:10.1126/science.1124000 · Cited by 1,876 · see citing works

Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution

Davey, C. A., Sargent, D. F., Luger, K., Mäder, A. W., & Richmond, T. J. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00386-8 · Cited by 1,490 · see citing works

ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex

Mizuguchi, G., Shen, X., Landry, J., Wu, W.-H., Sen, S., & Wu, C. (2003) · Science · doi:10.1126/science.1090701 · Cited by 1,312 · see citing works

SWI/SNF nucleosome remodellers and cancer

Wilson, B. G., & Roberts, C. W. M. (2011) · Nature reviews. Cancer · doi:10.1038/nrc3068 · Cited by 1,286 · see citing works

Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions

Goldberg, A. D., Banaszynski, L. A., Noh, K., Lewis, P. W., Elsässer, S. J., Stadler, S. C., Dewell, S. B., Law, M. J., Guo, X., Li, X., et al. (2010) · Cell · doi:10.1016/j.cell.2010.01.003 · Cited by 1,281 · see citing works

Structure and Mechanism of Helicases and Nucleic Acid Translocases

Singleton, M. R., Dillingham, M. S., & Wigley, D. B. (2007) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.76.052305.115300 · Cited by 1,279 · see citing works

A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling

Wysocka, J., Swigut, T., Xiao, H., Milne, T. A., Kwon, S. Y., Landry, J., Kauer, M., Tackett, A. J., Chait, B. T., Badenhorst, P. W., et al. (2006) · Nature · doi:10.1038/nature04815 · Cited by 1,186 · see citing works

Chromatin remodelling during development

Ho, L., & Crabtree, G. R. (2010) · Nature · doi:10.1038/nature08911 · Cited by 1,114 · see citing works

Histone exchange, chromatin structure and the regulation of transcription

Venkatesh, S., & Workman, J. L. (2015) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3941 · Cited by 940 · see citing works

ATP-dependent chromatin remodeling: genetics, genomics and mechanisms

Hargreaves, D. C., & Crabtree, G. R. (2011) · Cell Research · doi:10.1038/cr.2011.32 · Cited by 923 · see citing works

Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres

Lewis, P., Elsaesser, S. J., Noh, K., Stadler, S., & Allis, C. (2010) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.1008850107 · Cited by 830 · see citing works

Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

Li, H., Ilin, S., Wang, W., Duncan, E. M., Wysocka, J., Allis, C. D., & Patel, D. J. (2006) · Nature · doi:10.1038/nature04802 · Cited by 816 · see citing works

Crystal Structures of Complexes of PcrA DNA Helicase with a DNA Substrate Indicate an Inchworm Mechanism

Velankar, S. S., Soultanas, P., Dillingham, M. S., Subramanya, H. S., & Wigley, D. B. (1999) · Cell · doi:10.1016/s0092-8674(00)80716-3 · Cited by 785 · see citing works

H3.3/H2A.Z double variant–containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

Jin, C., Zang, C., Wei, G., Cui, K., Peng, W., Zhao, K., & Felsenfeld, G. (2009) · Nature Genetics · doi:10.1038/ng.409 · Cited by 776 · see citing works

A long noncoding RNA protects the heart from pathological hypertrophy

Han, P., Li, W., Lin, C.-H., Yang, J., Shang, C., Nürnberg, S., Jin, K. K., Xu, W., Lin, C., Lin, C., et al. (2014) · Nature · doi:10.1038/nature13596 · Cited by 734 · see citing works

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs

Flaus, A. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl295 · Cited by 727 · see citing works

Histone Variant H2A.Z Marks the 5′ Ends of Both Active and Inactive Genes in Euchromatin

Raisner, R. M., Hartley, P. D., Meneghini, M. D., Bao, M. Z., Liu, C. L., Schreiber, S. L., Rando, O. J., & Madhani, H. D. (2005) · Cell · doi:10.1016/j.cell.2005.10.002 · Cited by 676 · see citing works

ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor

Tsukiyama, T., Becker, P. B., & Wu, C. C. M. (1994) · Nature · doi:10.1038/367525a0 · Cited by 666 · see citing works

The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex

Prensner, J. R., Iyer, M. K., Sahu, A., Asangani, I. A., Cao, Q., Patel, L. R., Vergara, I. A., Davicioni, E., Erho, N., Ghadessi, M., et al. (2013) · Nature Genetics · doi:10.1038/ng.2771 · Cited by 664 · see citing works

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

Narlikar, G. J., Sundaramoorthy, R., & Owen‐Hughes, T. (2013) · Cell · doi:10.1016/j.cell.2013.07.011 · Cited by 659 · see citing works

ACF, an ISWI-Containing and ATP-Utilizing Chromatin Assembly and Remodeling Factor

Ito, T., Bulger, M., Pazin, M. J., Kobayashi, R., & Kadonaga, J. T. (1997) · Cell · doi:10.1016/s0092-8674(00)80321-9 · Cited by 633 · see citing works

Chromatin remodelling: the industrial revolution of DNA around histones

Saha, A., Wittmeyer, J., & Cairns, B. R. (2006) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1945 · Cited by 590 · see citing works

Cancer biology and NuRD: a multifaceted chromatin remodelling complex

Lai, A. Y., & Wade, P. A. (2011) · Nature reviews. Cancer · doi:10.1038/nrc3091 · Cited by 541 · see citing works

Genome-Wide Dynamics of Htz1, a Histone H2A Variant that Poises Repressed/Basal Promoters for Activation through Histone Loss

Zhang, H., Roberts, D. N., & Cairns, B. R. (2005) · Cell · doi:10.1016/j.cell.2005.08.036 · Cited by 537 · see citing works

Function and Selectivity of Bromodomains in Anchoring Chromatin-Modifying Complexes to Promoter Nucleosomes

Hassan, A. H., Prochasson, P., Neely, K. E., Galasinski, S. C., Chandy, M., Carrozza, M. J., & Workman, J. L. (2002) · Cell · doi:10.1016/s0092-8674(02)01005-x · Cited by 533 · see citing works

Double chromodomains cooperate to recognize the methylated histone H3 tail

Flanagan, J. F., Mi, L.-Z., Chruszcz, M., Cymborowski, M., Clines, K. L., Kim, Y., Minor, W., Rastinejad, F., & Khorasanizadeh, S. (2005) · Nature · doi:10.1038/nature04290 · Cited by 528 · see citing works

Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II

Varga‐Weisz, P., Wilm, M. S., Bonte, E. J., Dumas, K., Mann, M., & Becker, P. B. (1997) · Nature · doi:10.1038/41587 · Cited by 513 · see citing works

A Method for Genetically Installing Site-Specific Acetylation in Recombinant Histones Defines the Effects of H3 K56 Acetylation

Neumann, H., Hancock, S. M., Buning, R., Routh, A. L., Chapman, L., Somers, J., Owen‐Hughes, T., van Noort, J., Rhodes, D., & Chin, J. W. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.07.027 · Cited by 498 · see citing works

Signals and Combinatorial Functions of Histone Modifications

Suganuma, T., & Workman, J. L. (2011) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-061809-175347 · Cited by 498 · see citing works

The human Mi-2/NuRD complex and gene regulation

Denslow, S. A., & Wade, P. A. (2007) · Oncogene · doi:10.1038/sj.onc.1210611 · Cited by 479 · see citing works

Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome

Luk, E., Ranjan, A., FitzGerald, P. C., Mizuguchi, G., Huang, Y., Wei, D., & Wu, C. (2010) · Cell · doi:10.1016/j.cell.2010.10.019 · Cited by 470 · see citing works

Global Regulation of H2A.Z Localization by the INO80 Chromatin-Remodeling Enzyme Is Essential for Genome Integrity

Papamichos‐Chronakis, M., Watanabe, S., Rando, O. J., & Peterson, C. L. (2011) · Cell · doi:10.1016/j.cell.2010.12.021 · Cited by 455 · see citing works

ATR-X Syndrome Protein Targets Tandem Repeats and Influences Allele-Specific Expression in a Size-Dependent Manner

Law, M. J., Lower, K. M., Voon, H. P. J., Hughes, J. R., Garrick, D., Viprakasit, V., Mitson, M., Gobbi, M. D., Marra, M. A., Morris, A. P., et al. (2010) · Cell · doi:10.1016/j.cell.2010.09.023 · Cited by 443 · see citing works

Human but Not Yeast CHD1 Binds Directly and Selectively to Histone H3 Methylated at Lysine 4 via Its Tandem Chromodomains

Sims, R. J., Chen, C.-F., Santos-Rosa, H., Kouzarides, T., Patel, S. S., & Reinberg, D. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.c500395200 · Cited by 423 · see citing works

The SANT domain: a unique histone-tail-binding module?

Boyer, L. A., Latek, R. R., & Peterson, C. L. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1314 · Cited by 403 · see citing works

The bromodomain interaction module

Filippakopoulos, P., & Knapp, S. (2012) · FEBS Letters · doi:10.1016/j.febslet.2012.04.045 · Cited by 384 · see citing works

ATP-Dependent Chromatin Remodeling by the Cockayne Syndrome B DNA Repair-Transcription-Coupling Factor

Citterio, E., van den Boom, V., Schnitzler, G. R., Kanaar, R., Bonte, E. J., Kingston, R. E., Hoeijmakers, J. H. J., & Vermeulen, W. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.20.7643-7653.2000 · Cited by 371 · see citing works

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

Whitehouse, I., Flaus, A., Cairns, B. R., White, M. F., Workman, J. L., & Owen‐Hughes, T. (1999) · Nature · doi:10.1038/23506 · Cited by 356 · see citing works

Nucleosome Movement by CHRAC and ISWI without Disruption or trans-Displacement of the Histone Octamer

Längst, G., Bonte, E. J., Corona, D. F. V., & Becker, P. B. (1999) · Cell · doi:10.1016/s0092-8674(00)80797-7 · Cited by 355 · see citing works

Nucleosome Remodeling and Epigenetics

Becker, P. B., & Workman, J. L. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017905 · Cited by 355 · see citing works

Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions

Ruthenburg, A. J., Li, H., Milne, T. A., Dewell, S. B., McGinty, R. K., Yuen, M. A., Ueberheide, B. M., Dou, Y., Muir, T. W., Patel, D. J., et al. (2011) · Cell · doi:10.1016/j.cell.2011.03.053 · Cited by 353 · see citing works

Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes

Mohrmann, L., & Verrijzer, C. P. (2004) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2004.10.005 · Cited by 346 · see citing works

Involvement of Actin-Related Proteins in ATP-Dependent Chromatin Remodeling

Shen, X., Ranallo, R. T., Choi, E., & Wu, C. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00264-8 · Cited by 345 · see citing works

ATP-Dependent Histone Octamer Sliding Mediated by the Chromatin Remodeling Complex NURF

Hamiche, A., Sandaltzopoulos, R., Gdula, D. A., & Wu, C. (1999) · Cell · doi:10.1016/s0092-8674(00)80796-5 · Cited by 339 · see citing works

Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double‐strand breaks

van Attikum, H., Fritsch, O., & Gasser, S. M. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601835 · Cited by 333 · see citing works

Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes

Morrison, A. J., & Shen, X. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2693 · Cited by 311 · see citing works

Histone Chaperones: Assisting Histone Traffic and Nucleosome Dynamics

Gurard‐Levin, Z. A., Quivy, J., & Almouzni, G. (2014) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060713-035536 · Cited by 310 · see citing works

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

Smolle, M., Venkatesh, S., Gogol, M., Li, H., Zhang, Y., Florens, L. A., Washburn, M. P., & Workman, J. L. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2312 · Cited by 305 · see citing works

Histone Octamer Transfer by a Chromatin-Remodeling Complex

Lorch, Y., Zhang, M., & Kornberg, R. D. (1999) · Cell · doi:10.1016/s0092-8674(00)80551-6 · Cited by 301 · see citing works

Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly

Lusser, A., Urwin, D., & Kadonaga, J. T. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb884 · Cited by 293 · see citing works

Crystal Structure and Functional Analysis of a Nucleosome Recognition Module of the Remodeling Factor ISWI

Grüne, T., Brzeski, J., Eberharter, A., et al. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00273-9 · Cited by 286 · see citing works

Methylation of Histone H3 K4 Mediates Association of the Isw1p ATPase with Chromatin

Santos-Rosa, H., Schneider, R., Bernstein, B., Karabetsou, N., Morillon, A., Weise, C., Schreiber, S. L., Mellor, J., & Kouzarides, T. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00438-6 · Cited by 285 · see citing works

esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function

Ho, L., Miller, E. L., Ronan, J. L., Ho, W. Q., Jothi, R., & Crabtree, G. R. (2011) · Nature Cell Biology · doi:10.1038/ncb2285 · Cited by 274 · see citing works

Purification of a Human SRCAP Complex That Remodels Chromatin by Incorporating the Histone Variant H2A.Z into Nucleosomes

Ruhl, D. D., Jin, J., Cai, Y., Swanson, S. K., Florens, L. A., Washburn, M. P., Conaway, R. C., Conaway, J. W., & Chrivia, J. C. (2006) · Biochemistry · doi:10.1021/bi060043d · Cited by 269 · see citing works

SWI/SNF Mediates Polycomb Eviction and Epigenetic Reprogramming of the INK4b-ARF-INK4a Locus

Kia, S. K., Gorski, M. M., Giannakopoulos, S., & Verrijzer, C. P. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.02019-07 · Cited by 265 · see citing works

A cooperative activation loop among SWI/SNF, γ‐H2AX and H3 acetylation for DNA double‐strand break repair

Lee, H.-S., Park, J., Kim, S., Kwon, S.-J., & Kwon, J. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.27 · Cited by 263 · see citing works

SWI/SNF unwraps, slides, and rewraps the nucleosome.

Kassabov, S. R., Zhang, B., Persinger, J., & Bartholomew, B. (2003) · Molecules and Cells · doi:10.1016/s1097-2765(03)00039-x · Cited by 261 · see citing works

Dual Functions of Largest NURF Subunit NURF301 in Nucleosome Sliding and Transcription Factor Interactions

Xiao, H., Sandaltzopoulos, R., Wang, H.-M., Hamiche, A., Ranallo, R. T., Lee, K.-M., Fu, D., & Wu, C. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00345-8 · Cited by 259 · see citing works

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

Zofall, M., Persinger, J., Kassabov, S. R., & Bartholomew, B. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1071 · Cited by 258 · see citing works

Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange

Wu, W.-H., Alami, S., Luk, E., et al. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1023 · Cited by 258 · see citing works

Removal of Promoter Nucleosomes by Disassembly Rather Than Sliding In Vivo

Boeger, H., Griesenbeck, J., Strattan, J. S., & Kornberg, R. D. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.05.013 · Cited by 258 · see citing works

Chromatin remodeling by RSC involves ATP-dependent DNA translocationPreprint

Saha, A., Wittmeyer, J., & Cairns, B. R. (2002) · Genes & Development · doi:10.1101/gad.995002 · Cited by 248 · see citing works

CHD1 Motor Protein Is Required for Deposition of Histone Variant H3.3 into Chromatin in Vivo

Konev, A. Y., Tribus, M., Park, S. Y., Podhraski, V., Lim, C. Y., Emelyanov, A. V., Vershilova, E., Pirrotta, V., Kadonaga, J. T., Lusser, A., et al. (2007) · Science · doi:10.1126/science.1145339 · Cited by 247 · see citing works

Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators

Yudkovsky, N., Logie, C., Hahn, S., & Peterson, C. L. (1999) · Genes & Development · doi:10.1101/gad.13.18.2369 · Cited by 241 · see citing works

ISWI Is an ATP-Dependent Nucleosome Remodeling Factor

Corona, D. F. V., Längst, G., Clapier, C. R., Bonte, E. J., Ferrari, S., Tamkun, J. W., & Becker, P. B. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80314-7 · Cited by 239 · see citing works

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure

Liu, X., Li, M., Xia, X., Li, X., & Chen, Z. (2017) · Nature · doi:10.1038/nature22036 · Cited by 238 · see citing works

A Rad26–Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage

Woudstra, E. C., Gilbert, C., Fellows, J., Jansen, L. E. T., Brouwer, J., Erdjument‐Bromage, H., Tempst, P., & Svejstrup, J. Q. (2002) · Nature · doi:10.1038/415929a · Cited by 234 · see citing works

Chromatin remodeling: insights and intrigue from single-molecule studies

Cairns, B. R. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1333 · Cited by 233 · see citing works

RVB1/RVB2: Running Rings around Molecular Biology

Jha, S., & Dutta, A. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.05.016 · Cited by 232 · see citing works

Modulation of ISWI function by site‐specific histone acetylation

Corona, D. F. V., Clapier, C. R., Becker, P. B., & Tamkun, J. W. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf056 · Cited by 230 · see citing works

Structure and Subunit Topology of the INO80 Chromatin Remodeler and Its Nucleosome Complex

Tosi, A., Haas, C., Herzog, F., Gilmozzi, A., Berninghausen, O., Ungewickell, C., Gerhold, C., Lakomek, K., Aebersold, R. H., Beckmann, R., et al. (2013) · Cell · doi:10.1016/j.cell.2013.08.016 · Cited by 229 · see citing works

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

Yang, J. G., Madrid, T. S., Sevastopoulos, E., et al. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1170 · Cited by 219 · see citing works

DNA Translocation and Loop Formation Mechanism of Chromatin Remodeling by SWI/SNF and RSC

Zhang, Y., Smith, C. L., Saha, A., Grill, S. W., Mihardja, S. S., Smith, S. B., Cairns, B. R., Peterson, C. L., & Bustamante, C. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.10.025 · Cited by 219 · see citing works

Multiple roles for ISWI in transcription, chromosome organization and DNA replication.

Corona, D., & Tamkun, J. (2004) · Biochimica et Biophysica Acta · doi:10.1016/j.bbaexp.2003.09.018 · Cited by 218 · see citing works

The Chromodomains of the Chd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor

Hauk, G., McKnight, J. N., Nodelman, I. M., & Bowman, G. D. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.08.012 · Cited by 215 · see citing works

Critical Role for the Histone H4 N Terminus in Nucleosome Remodeling by ISWI

Clapier, C. R., Längst, G., Corona, D. F. V., Becker, P. B., & Nightingale, K. P. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.3.875-883.2001 · Cited by 215 · see citing works

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site

Saha, A., Wittmeyer, J., & Cairns, B. R. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb973 · Cited by 214 · see citing works

TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila

Hochheimer, A., Zhou, S., Zheng, S., Holmes, M. C., & Tjian, R. (2002) · Nature · doi:10.1038/nature01167 · Cited by 213 · see citing works

Regulating the Chromatin Landscape: Structural and Mechanistic Perspectives

Bartholomew, B. (2014) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-051810-093157 · Cited by 210 · see citing works

A YY1–INO80 complex regulates genomic stability through homologous recombination–based repair

Wu, S., Shi, Y. G., Mulligan, P., Gay, F., Landry, J. W., Liu, H., Lu, J., Qi, H. H., Wang, W., Nickoloff, J. A., et al. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1332 · Cited by 208 · see citing works

Dynamics of nucleosome remodelling by individual ACF complexes

Blosser, T. R., Yang, J. G., Stone, M. D., Narlikar, G. J., & Zhuang, X. (2009) · Nature · doi:10.1038/nature08627 · Cited by 207 · see citing works

Chromatin remodeling by nucleosome disassembly in vitro

Lorch, Y., Maier-Davis, B., & Kornberg, R. D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511050103 · Cited by 206 · see citing works

The NuRD architecture

Allen, H. F., Wade, P. A., & Kutateladze, T. G. (2013) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-012-1256-2 · Cited by 205 · see citing works

The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases

Szerlong, H. J., Hinata, K., Viswanathan, R., Erdjument‐Bromage, H., Tempst, P., & Cairns, B. R. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1403 · Cited by 200 · see citing works

A Histone Acetylation Switch Regulates H2A.Z Deposition by the SWR-C Remodeling Enzyme

Watanabe, S., Radman‐Livaja, M., Rando, O. J., & Peterson, C. L. (2013) · Science · doi:10.1126/science.1229758 · Cited by 196 · see citing works

ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps

Deindl, S., Hwang, W. L., Hota, S. K., et al. (2013) · Cell · doi:10.1016/j.cell.2012.12.040 · Cited by 193 · see citing works

Analysis of Nucleosome Repositioning by Yeast ISWI and Chd1 Chromatin Remodeling Complexes

Stockdale, C., Flaus, A., Ferreira, H. C., & Owen‐Hughes, T. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m600682200 · Cited by 193 · see citing works

Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptationin response to DNA damagePreprint

Papamichos-Chronakis, M., Krebs, J. E., & Peterson, C. L. (2006) · Genes & Development · doi:10.1101/gad.1440206 · Cited by 191 · see citing works

YY1 functions with INO80 to activate transcription

Cai, Y., Jin, J., Yao, T., Gottschalk, A. J., Swanson, S. K., Wu, S., Shi, Y., Washburn, M. P., Florens, L. A., Conaway, R. C., et al. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1276 · Cited by 189 · see citing works

Human pigmentation genetics: the difference is only skin deep

Sturm, R. A., Box, N. F., & Ramsay, M. (1998) · BioEssays · doi:10.1002/(sici)1521-1878(199809)20:9 · Cited by 188 · see citing works

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

Racki, L. R., Yang, J. G., Naber, N. I., et al. (2009) · Nature · doi:10.1038/nature08621 · Cited by 187 · see citing works

NuA4-dependent Acetylation of Nucleosomal Histones H4 and H2A Directly Stimulates Incorporation of H2A.Z by the SWR1 Complex

Altaf, M., Auger, A., Saksouk, J., Brodeur, J., Piquet, S., Cramet, M., Bouchard, N., Lacoste, N., Utley, R. T., Gaudreau, L. R., et al. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.117069 · Cited by 185 · see citing works

Eaf1 Is the Platform for NuA4 Molecular Assembly That Evolutionarily Links Chromatin Acetylation to ATP-Dependent Exchange of Histone H2A Variants

Auger, A., Galarneau, L., Altaf, M., Nourani, A., Doyon, Y., Utley, R. T., Cronier, D., Allard, S., & Côté, J. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01755-07 · Cited by 181 · see citing works

Chromatin Regulatory Mechanisms in Pluripotency

Lessard, J. A., & Crabtree, G. R. (2010) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-051809-102012 · Cited by 178 · see citing works

Plant Homeodomain (PHD) Fingers of CHD4 Are Histone H3-binding Modules with Preference for Unmodified H3K4 and Methylated H3K9

Mansfield, R. E., Musselman, C. A., Kwan, A. H., Oliver, S. S., Garske, A. L., Davrazou, F., Denu, J. M., Kutateladze, T. G., & Mackay, J. P. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.208207 · Cited by 177 · see citing works

SWI/SNF Has Intrinsic Nucleosome Disassembly Activity that Is Dependent on Adjacent Nucleosomes

Dechassa, M. L., Sabri, A., Pondugula, S., Kassabov, S. R., Chatterjee, N., Kladde, M. P., & Bartholomew, B. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.02.040 · Cited by 177 · see citing works

Structural analysis of the yeast SWI/SNF chromatin remodeling complex

Smith, C. L., Horowitz-Scherer, R. A., Flanagan, J. F., et al. (2003) · Nature Structural Biology · doi:10.1038/nsb888 · Cited by 175 · see citing works

The chromo domain protein Chd1p from budding yeast is an ATP‐dependent chromatin‐modifying factor

Tran, H. G., Steger, D. J., Iyer, V. R., & Johnson, A. D. (2000) · The EMBO Journal · doi:10.1093/emboj/19.10.2323 · Cited by 172 · see citing works

Regulation of ISWI involves inhibitory modules antagonized by nucleosomal epitopes

Clapier, C. R., & Cairns, B. R. (2012) · Nature · doi:10.1038/nature11625 · Cited by 172 · see citing works

Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF

Hamiche, A., Kang, J., Dennis, C., Xiao, H., & Wu, C. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.251421398 · Cited by 169 · see citing works

Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription

Boeger, H., Griesenbeck, J., & Kornberg, R. D. (2008) · Cell · doi:10.1016/j.cell.2008.02.051 · Cited by 164 · see citing works

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

Ocampo, J., Chereji, R. V., Eriksson, P. R., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw068 · Cited by 162 · see citing works

Topography of the ISW2–nucleosome complex: insights into nucleosome spacing and chromatin remodeling

Kagalwala, M. N., Glaus, B. J., Dang, W.-W., Zofall, M., & Bartholomew, B. (2004) · EMBO Journal · doi:10.1038/sj.emboj.7600220 · Cited by 160 · see citing works

Direct Observation of DNA Distortion by the RSC Complex

Lia, G., Praly, É., Ferreira, H. C., Stockdale, C., Tse‐Dinh, Y., Dunlap, D. D., Croquette, V., Bensimon, D., & Owen‐Hughes, T. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.12.013 · Cited by 158 · see citing works

Molecular Architecture of the ATP-Dependent Chromatin-Remodeling Complex SWR1

Nguyen, V. Q., Ranjan, A., Stengel, F., et al. (2013) · Cell · doi:10.1016/j.cell.2013.08.018 · Cited by 158 · see citing works

Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription

Cerbo, V. D., Mohn, F., Ryan, D., Montellier, E., Kacem, S., Tropberger, P., Kallis, E., Holzner, M., Hoerner, L., Feldmann, A., et al. (2014) · eLife · doi:10.7554/elife.01632 · Cited by 157 · see citing works

A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI

Clapier, C. R. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.3.649 · Cited by 153 · see citing works

Structural basis of histone H4 recognition by p55Preprint

Song, J., Garlick, J. D., & Kingston, R. E. (2008) · Genes & Development · doi:10.1101/gad.1653308 · Cited by 153 · see citing works

Evidence for DNA Translocation by the ISWI Chromatin-Remodeling Enzyme

Whitehouse, I., Stockdale, C., Flaus, A., et al. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.6.1935-1945.2003 · Cited by 150 · see citing works

Spatial Contacts and Nucleosome Step Movements Induced by the NURF Chromatin Remodeling Complex

Schwanbeck, R., Xiao, H., & Wu, C. C. M. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m406060200 · Cited by 144 · see citing works

The INO80 ATP-Dependent Chromatin Remodeling Complex Is a Nucleosome Spacing Factor

Udugama, M., Sabri, A., & Bartholomew, B. (2010) · Molecular and Cellular Biology · doi:10.1128/mcb.01035-10 · Cited by 144 · see citing works

Yeast Isw1p Forms Two Separable Complexes In Vivo

Vary, J. C., Gangaraju, V. K., Qin, J., et al. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.23.1.80-91.2003 · Cited by 144 · see citing works

Histone Modifications Influence the Action of Snf2 Family Remodelling Enzymes by Different Mechanisms

Ferreira, H. C., Flaus, A., & Owen‐Hughes, T. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.09.059 · Cited by 142 · see citing works

The structure of NoRC‐associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus

Mayer, C., Neubert, M., & Grummt, I. (2008) · EMBO Reports · doi:10.1038/embor.2008.109 · Cited by 142 · see citing works

EP400 Deposits H3.3 into Promoters and Enhancers during Gene Activation

Pradhan, S. K., Su, T., Yen, L., Jacquet, K., Huang, C., Côté, J., Kurdistani, S. K., & Carey, M. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.10.039 · Cited by 141 · see citing works

Architecture of the SWI/SNF-Nucleosome Complex

Dechassa, M. L., Zhang, B., Horowitz-Scherer, R. A., Persinger, J., Woodcock, C. L. F., Peterson, C. L., & Bartholomew, B. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00693-08 · Cited by 139 · see citing works

ISWI Induces Nucleosome Sliding on Nicked DNA

Längst, G., & Becker, P. B. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00397-5 · Cited by 137 · see citing works

Autoregulation of the Rsc4 Tandem Bromodomain by Gcn5 Acetylation

VanDemark, A. P., Kasten, M. M., Ferris, E., Heroux, A., Hill, C. P., & Cairns, B. R. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.08.018 · Cited by 130 · see citing works

Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms

Chatterjee, N., Sinha, D., Dechassa, M. L., Tan, S., Shogren‐Knaak, M. A., & Bartholomew, B. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr535 · Cited by 127 · see citing works

Structure of a RSC–nucleosome complex and insights into chromatin remodeling

Chaban, Y. L., Ezeokonkwo, C., Chung, W.-H., Zhang, F., Kornberg, R. D., Maier-Davis, B., Lorch, Y., & Asturias, F. J. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1524 · Cited by 124 · see citing works

The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors

Wiechens, N., Singh, V., Gkikopoulos, T., Schofield, P., Rocha, S., & Owen‐Hughes, T. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005940 · Cited by 124 · see citing works

SWI/SNF Chromatin Remodeling Requires Changes in DNA Topology

Gavin, I. M., Horn, P. J., & Peterson, C. L. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00158-7 · Cited by 120 · see citing works

The DNA‐binding domain of the Chd1 chromatin‐remodelling enzyme contains SANT and SLIDE domains

Ryan, D., Sundaramoorthy, R., Martin, D. M. A., Singh, V., & Owen‐Hughes, T. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.166 · Cited by 120 · see citing works

Subunit Organization of the Human INO80 Chromatin Remodeling Complex

Lu, C., Cai, Y., Jin, J., et al. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.222505 · Cited by 116 · see citing works

Nucleosomes can invade DNA territories occupied by their neighbors

Engeholm, M., de Jager, M., Flaus, A., Brenk, R., van Noort, J., & Owen‐Hughes, T. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1551 · Cited by 115 · see citing works

Domain Architecture of the Catalytic Subunit in the ISW2-Nucleosome Complex

Dang, W., & Bartholomew, B. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.01351-07 · Cited by 114 · see citing works

Extranucleosomal DNA Binding Directs Nucleosome Sliding by Chd1

McKnight, J. N., Jenkins, K. R., Nodelman, I. M., Escobar, T. M., & Bowman, G. D. (2011) · Molecular and Cellular Biology · doi:10.1128/mcb.05735-11 · Cited by 112 · see citing works

Dynamic regulation of transcription factors by nucleosome remodeling

Li, M., Hada, A., Sen, P., Olufemi, L., Hall, M. A., Smith, B. Y., Forth, S. T., McKnight, J. N., Patel, A. K., Bowman, G. D., et al. (2015) · eLife · doi:10.7554/elife.06249 · Cited by 112 · see citing works

Structure of an actin-related subcomplex of the SWI/SNF chromatin remodeler

Schubert, H., Wittmeyer, J., Kasten, M. M., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1215379110 · Cited by 110 · see citing works

Distortion of histone octamer core promotes nucleosome mobilization by a chromatin remodeler

Sinha, K. K., Gross, J. D., & Narlikar, G. J. (2017) · Science · doi:10.1126/science.aaa3761 · Cited by 110 · see citing works

CHD chromatin remodelers and the transcription cycle

Murawska, M., & Brehm, A. (2011) · Transcription · doi:10.4161/trns.2.6.17840 · Cited by 108 · see citing works

A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

Strohner, R., Wachsmuth, M., Dachauer, K., et al. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb966 · Cited by 107 · see citing works

Structure and regulation of the chromatin remodeller ISWI

Yan, L., Wang, L., Tian, Y., et al. (2016) · Nature · doi:10.1038/nature20590 · Cited by 103 · see citing works

UV-Induced Association of the CSB Remodeling Protein with Chromatin Requires ATP-Dependent Relief of N-Terminal Autorepression

Lake, R. J., Geyko, A., Hemashettar, G., Zhao, Y., & Fan, H.-Y. (2010) · Molecular Cell · doi:10.1016/j.molcel.2009.10.027 · Cited by 102 · see citing works

Activation domains drive nucleosome eviction by SWI/SNF

Gutiérrez, J. L., Chandy, M., Carrozza, M. J., & Workman, J. L. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601524 · Cited by 102 · see citing works

Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA

Hwang, W. L., Deindl, S., Harada, B. T., et al. (2014) · Nature · doi:10.1038/nature13380 · Cited by 97 · see citing works

Dynamics of ATP-dependent chromatin assembly by ACF

Fyodorov, D. V., & Kadonaga, J. T. (2002) · Nature · doi:10.1038/nature00929 · Cited by 93 · see citing works

Remodeling the chromatin structure of a nucleosome array by transcription factor‐targeted trans‐displacement of histones.

Owen‐Hughes, T., & Workman, J. L. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00847.x · Cited by 93 · see citing works

The ATPase domain of ISWI is an autonomous nucleosome remodeling machine

Mueller‐Planitz, F., Klinker, H., Ludwigsen, J., et al. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2457 · Cited by 92 · see citing works

Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method

Leschziner, A. E., Saha, A., Wittmeyer, J., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700706104 · Cited by 91 · see citing works

Regulation of DNA Translocation Efficiency within the Chromatin Remodeler RSC/Sth1 Potentiates Nucleosome Sliding and Ejection

Clapier, C. R., Kasten, M. M., Parnell, T. J., Viswanathan, R., Szerlong, H. J., Sirinakis, G., Zhang, Y., & Cairns, B. R. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.03.032 · Cited by 91 · see citing works

The Catalytic Subunit of the SWR1 Remodeler Is a Histone Chaperone for the H2A.Z-H2B Dimer

Hong, J., Feng, H., Wang, F., et al. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.01.010 · Cited by 90 · see citing works

The RSC chromatin remodelling ATPase translocates DNA with high force and small step size

Sirinakis, G., Clapier, C. R., Gao, Y., Viswanathan, R., Cairns, B. R., & Zhang, Y.-L. (2011) · EMBO Journal · doi:10.1038/emboj.2011.141 · Cited by 90 · see citing works

Identification of a Rapidly Formed Nonnucleosomal Histone-DNA Intermediate that Is Converted into Chromatin by ACF

Torigoe, S. E., Urwin, D., Ishii, H., Smith, D. E., & Kadonaga, J. T. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.07.017 · Cited by 89 · see citing works

Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement

Yang, X., Zaurín, R., Beato, M., & Peterson, C. L. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1238 · Cited by 88 · see citing works

Regulation of ISW2 by Concerted Action of Histone H4 Tail and Extranucleosomal DNA

Dang, W., Kagalwala, M. N., & Bartholomew, B. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01159-06 · Cited by 88 · see citing works

Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2Preprint

Kim, J., Saraf, A., Florens, L. A., Washburn, M. P., & Workman, J. L. (2010) · Genes & Development · doi:10.1101/gad.1979710 · Cited by 85 · see citing works

SnapShot: Chromatin Remodeling Complexes

Bao, Y., & Shen, X. (2007) · Cell · doi:10.1016/j.cell.2007.04.018 · Cited by 84 · see citing works

Structural analysis of the RSC chromatin-remodeling complex

Asturias, F. J., Chung, W.-H., Kornberg, R. D., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.162504299 · Cited by 81 · see citing works

Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C

Watanabe, S., Tan, D., Lakshminarasimhan, M., et al. (2015) · Nature Communications · doi:10.1038/ncomms8108 · Cited by 80 · see citing works

A Nucleotide-Driven Switch Regulates Flanking DNA Length Sensing by a Dimeric Chromatin Remodeler

Leonard, J. D., & Narlikar, G. J. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.01.008 · Cited by 79 · see citing works

Stepwise nucleosome translocation by RSC remodeling complexes

Harada, B. T., Hwang, W. L., Deindl, S., Chatterjee, N., Bartholomew, B., & Zhuang, X. (2016) · eLife · doi:10.7554/elife.10051 · Cited by 79 · see citing works

Chromatin remodeling enzymes: taming the machines

Peterson, C. L. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf075 · Cited by 78 · see citing works

Chromatin Remodeling by Imitation Switch (ISWI) Class ATP-dependent Remodelers Is Stimulated by Histone Variant H2A.Z

Goldman, J., Garlick, J. D., & Kingston, R. E. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.072348 · Cited by 78 · see citing works

The PHD and Chromo Domains Regulate the ATPase Activity of the Human Chromatin Remodeler CHD4

Watson, A. A., Mahajan, P., Mertens, H. D. T., Deery, M. J., Zhang, W., Pham, P., Du, X., Bartke, T., Zhang, W., Edlich, C., et al. (2012) · Journal of Molecular Biology · doi:10.1016/j.jmb.2012.04.031 · Cited by 78 · see citing works

Functional Role of Extranucleosomal DNA and the Entry Site of the Nucleosome in Chromatin Remodeling by ISW2

Zofall, M., Persinger, J., & Bartholomew, B. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.22.10047-10057.2004 · Cited by 73 · see citing works

The prenucleosome, a stable conformational isomer of the nucleosomePreprint

Fei, J., Torigoe, S. E., Brown, C. R., Khuong, M. T., Kassavetis, G. A., Boeger, H., & Kadonaga, J. T. (2015) · Genes & Development · doi:10.1101/gad.272633.115 · Cited by 73 · see citing works

Nucleosome disassembly during human non-homologous end joining followed by concerted HIRA- and CAF-1-dependent reassembly

Li, X., & Tyler, J. K. (2016) · eLife · doi:10.7554/elife.15129 · Cited by 71 · see citing works

Molecular Basis of Histone Tail Recognition by Human TIP5 PHD Finger and Bromodomain of the Chromatin Remodeling Complex NoRC

Tallant, C., Valentini, E., Fedorov, O., Overvoorde, L. M., Ferguson, F. M., Filippakopoulos, P., Svergun, D. I., Knapp, S., & Ciulli, A. (2014) · Structure · doi:10.1016/j.str.2014.10.017 · Cited by 70 · see citing works

The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism

Parnell, T. J., Schlichter, A., Wilson, B. G., & Cairns, B. R. (2015) · eLife · doi:10.7554/elife.06073 · Cited by 70 · see citing works

Interdomain Communication of the Chd1 Chromatin Remodeler across the DNA Gyres of the Nucleosome

Nodelman, I. M., Bleichert, F., Patel, A. K., Ren, R., Horvath, K. C., Berger, J. M., & Bowman, G. D. (2017) · Molecular Cell · doi:10.1016/j.molcel.2016.12.011 · Cited by 68 · see citing works

Structure of chromatin remodeler Swi2/Snf2 in the resting state

Xia, X., Liu, X., Li, T., Fang, X., & Chen, Z. (2016) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.3259 · Cited by 67 · see citing works

The SnAC Domain of SWI/SNF Is a Histone Anchor Required for Remodeling

Sen, P., Vivas, P., Dechassa, M. L., et al. (2012) · Molecular and Cellular Biology · doi:10.1128/mcb.00922-12 · Cited by 66 · see citing works

Reaction cycle of the yeast Isw2 chromatin remodeling complex

Fitzgerald, D. J., DeLuca, C. I., Berger, I., et al. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600364 · Cited by 66 · see citing works

SnapShot: Chromatin Remodeling: ISWI

Yadon, A. N., & Tsukiyama, T. (2011) · Cell · doi:10.1016/j.cell.2011.01.019 · Cited by 64 · see citing works

Two Distinct Mechanisms of Chromatin Interaction by the Isw2 Chromatin Remodeling Complex In Vivo

Fazzio, T. G., Gelbart, M. E., & Tsukiyama, T. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.21.9165-9174.2005 · Cited by 62 · see citing works

SWI/SNF Binding to the HO Promoter Requires Histone Acetylation and Stimulates TATA-Binding Protein Recruitment

Mitra, D., Parnell, E. J., Landon, J. W., Yu, Y., & Stillman, D. J. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01849-05 · Cited by 61 · see citing works

Fundamentals of Chromatin

Workman, J. L., & Abmayr, S. M. (2013) · Springer eBooks · doi:10.1007/978-1-4614-8624-4 · Cited by 58 · see citing works

H2A histone-fold and DNA elements in nucleosome activate SWR1-mediated H2A.Z replacement in budding yeast

Ranjan, A., Wang, F., Mizuguchi, G., Wei, D., Huang, Y., & Wu, C. (2015) · eLife · doi:10.7554/elife.06845 · Cited by 57 · see citing works

SnapShot: Chromatin Remodeling: INO80 and SWR1

Bao, Y., & Shen, X. (2011) · Cell · doi:10.1016/j.cell.2010.12.024 · Cited by 56 · see citing works

Multiple modes of regulation of the human Ino80 SNF2 ATPase by subunits of the INO80 chromatin-remodeling complex

Lu, C., Conaway, R. C., & Conaway, J. W. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317092110 · Cited by 56 · see citing works

SnapShot: Chromatin Remodeling:SWI/SNF

Kasten, M. M., Clapier, C. R., & Cairns, B. R. (2011) · Cell · doi:10.1016/j.cell.2011.01.007 · Cited by 52 · see citing works

SWI/SNF recruitment to a DNA double-strand break by the NuA4 and Gcn5 histone acetyltransferases

Bennett, G., & Peterson, C. L. (2015) · DNA repair · doi:10.1016/j.dnarep.2015.03.006 · Cited by 50 · see citing works

GAL4 directs nucleosome sliding induced by NURF

Kang, J., Hamiche, A., & Wu, C. C. M. (2002) · The EMBO Journal · doi:10.1093/emboj/21.6.1406 · Cited by 48 · see citing works

Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions

Dutta, A., Gogol, M., Kim, J.-H., Smolle, M., Venkatesh, S., Gilmore, J., Florens, L., Washburn, M. P., & Workman, J. L. (2014) · Genes & Development · doi:10.1101/gad.243584.114 · Cited by 45 · see citing works

The ISWI Chromatin Remodeler Organizes the hsrω ncRNA–Containing Omega Speckle Nuclear Compartments

Onorati, M. C., Lazzaro, S., Mallik, M., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002096 · Cited by 44 · see citing works

Structural Studies of the Human PBAF Chromatin-Remodeling Complex

Leschziner, A. E., Lemon, B. D., Tjian, R., et al. (2005) · Structure · doi:10.1016/j.str.2004.12.008 · Cited by 43 · see citing works

Assembly of the Arp5 (Actin-related Protein) Subunit Involved in Distinct INO80 Chromatin Remodeling Activities

Yao, W., Beckwith, S. L., Zheng, T., et al. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.674887 · Cited by 43 · see citing works

Synergy and antagonism in regulation of recombinant human INO80 chromatin remodeling complex

Willhöft, O., Bythell‐Douglas, R., McCormack, E. A., & Wigley, D. B. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw509 · Cited by 42 · see citing works

Crystal structure of a nuclear actin ternary complex

Cao, T., Sun, L., Jiang, Y., Huang, S., Wang, J., & Chen, Z. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1602818113 · Cited by 41 · see citing works

DNA Looping Facilitates Targeting of a Chromatin Remodeling Enzyme

Yadon, A. N., Singh, B. N., Hampsey, M., & Tsukiyama, T. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.02.005 · Cited by 39 · see citing works

Novel Mi-2 related ATP-dependent chromatin remodelers

Kunert, N., & Brehm, A. (2009) · Epigenetics · doi:10.4161/epi.8933 · Cited by 37 · see citing works

Acetylated Histone Tail Peptides Induce Structural Rearrangements in the RSC Chromatin Remodeling Complex

Skiniotis, G., Moazed, D., & Walz, T. M. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.c700081200 · Cited by 37 · see citing works

The Histone H4 Tail Regulates the Conformation of the ATP-Binding Pocket in the SNF2h Chromatin Remodeling Enzyme

Racki, L. R., Naber, N. I., Pate, E. F., et al. (2014) · Journal of Molecular Biology · doi:10.1016/j.jmb.2014.02.021 · Cited by 37 · see citing works

Concerted regulation of ISWI by an autoinhibitory domain and the H4 N-terminal tail

Ludwigsen, J., Pfennig, S., Singh, A. K., et al. (2017) · eLife · doi:10.7554/elife.21477 · Cited by 36 · see citing works

Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis

Rege, M., Subramanian, V., Zhu, C., Hsieh, T.-H. S., Weiner, A., Friedman, N., Clauder‐Münster, S., Steinmetz, L. M., Rando, O. J., Boyer, L. A., et al. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.10.030 · Cited by 35 · see citing works

The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome

Nodelman, I. M., Horvath, K. C., Levendosky, R. F., Winger, J., Ren, R., Patel, A. K., Li, M., Wang, M. D., Roberts, E., & Bowman, G. D. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw406 · Cited by 31 · see citing works

ISWI Remodelling of Physiological Chromatin Fibres Acetylated at Lysine 16 of Histone H4

Klinker, H., Mueller‐Planitz, F., Yang, R., Forné, I., Liu, C., Nordenskiöld, L., & Becker, P. B. (2014) · PLoS ONE · doi:10.1371/journal.pone.0088411 · Cited by 29 · see citing works

Regulation of the Rhp26 ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif

Wang, L., Limbo, O., Fei, J., Chen, L., Kim, B., Luo, J., Chong, J. P. C., Conaway, R. C., Conaway, J. W., Ranish, J. A., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1420227112 · Cited by 28 · see citing works

The ATP-Dependent Remodeler RSC Transfers Histone Dimers and Octamers through the Rapid Formation of an Unstable Encounter Intermediate

Rowe, C. E., & Narlikar, G. J. (2010) · Biochemistry · doi:10.1021/bi101491u · Cited by 27 · see citing works

No need for a power stroke in ISWI‐mediated nucleosome sliding

Ludwigsen, J., Klinker, H., & Mueller‐Planitz, F. (2013) · EMBO Reports · doi:10.1038/embor.2013.160 · Cited by 22 · see citing works

Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme

Manning, B. J., & Peterson, C. L. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1420096111 · Cited by 21 · see citing works

Chromatin Remodeling Complexes

Clapier, C. R., & Cairns, B. R. (2013) · Springer eBooks · doi:10.1007/978-1-4614-8624-4_3 · Cited by 17 · see citing works

Site-Specific Attachment of Reporter Compounds to Recombinant Histones

Bruno, M., Flaus, A., & Owen‐Hughes, T. (2003) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(03)75014-9 · Cited by 12 · see citing works

Epigenetic regulation of the innate immune response to infection

Zhang, Q., & Cao, X. (2019) · Nature Reviews Immunology · doi:10.1038/s41577-019-0151-6 · Cited by 366 · see citing works

Mitochondrial DNA variation and cancer

Kopinski, P. K., Singh, L. N., Zhang, S., Lott, M. T., & Wallace, D. C. (2021) · Nature reviews. Cancer · doi:10.1038/s41568-021-00358-w · Cited by 301 · see citing works

Discovery of Orally Active Inhibitors of Brahma Homolog (BRM)/SMARCA2 ATPase Activity for the Treatment of Brahma Related Gene 1 (BRG1)/SMARCA4-Mutant Cancers

Papillon, J. P. N., Nakajima, K., Adair, C. D., Hempel, J., Jouk, A. O., Karki, R. G., Mathieu, S., Möbitz, H., Ntaganda, R., Smith, T., et al. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b01318 · Cited by 244 · see citing works

The pancreatic cancer genome revisited

Hayashi, A., Hong, J., & Iacobuzio-Donahue, C. A. (2021) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-021-00463-z · Cited by 211 · see citing works

RNA polymerase II speed: a key player in controlling and adapting transcriptome composition

Muniz, L., Nicolas, E., & Trouche, D. (2021) · The EMBO Journal · doi:10.15252/embj.2020105740 · Cited by 203 · see citing works

Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag

Bartosovic, M., & Castelo-Branco, G. (2023) · Nature Biotechnology · doi:10.1038/s41587-022-01535-4 · Cited by 146 · see citing works

Regulation of Adult Neurogenesis in Mammalian Brain

Niklison-Chirou, M. V., Agostini, M., Amelio, I., & Melino, G. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21144869 · Cited by 143 · see citing works

Sequence-Directed Action of RSC Remodeler and General Regulatory Factors Modulates +1 Nucleosome Position to Facilitate Transcription

Kubik, S., O’Duibhir, E., de Jonge, W. J., Mattarocci, S., Albert, B., Falcone, J.-L., Bruzzone, M. J., Holstege, F. C. P., & Shore, D. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.05.030 · Cited by 133 · see citing works

Opposing chromatin remodelers control transcription initiation frequency and start site selection

Kubik, S., Bruzzone, M. J., Challal, D., Dreos, R., Mattarocci, S., Bucher, P., Libri, D., & Shore, D. (2019) · Nature Structural & Molecular Biology · doi:10.1038/s41594-019-0273-3 · Cited by 126 · see citing works

Regulation of DNA Repair Mechanisms: How the Chromatin Environment Regulates the DNA Damage Response

Stadler, J., & Richly, H. (2017) · International Journal of Molecular Sciences · doi:10.3390/ijms18081715 · Cited by 110 · see citing works

Role of histone deacetylases and their inhibitors in neurological diseases

Zhang, L.-Y., Zhang, S.-Y., Wen, R., Zhang, T.-N., & Yang, N. (2024) · Pharmacological Research · doi:10.1016/j.phrs.2024.107410 · Cited by 84 · see citing works

Hypoxia-inducible factor in cancer: from pathway regulation to therapeutic opportunity

Ortmann, B. M. (2024) · BMJ Oncology · doi:10.1136/bmjonc-2023-000154 · Cited by 67 · see citing works

Epigenetic regulation in cell senescence

Cheng, L.-Q., Zhang, Z.-Q., Chen, H.-Z., & Liu, D.-P. (2017) · Journal of Molecular Medicine · doi:10.1007/s00109-017-1581-x · Cited by 64 · see citing works

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Qiu, C., Jin, H., Vvedenskaya, I., Llenas, J. A., Zhao, T., Malik, I., Visbisky, A. M., Schwartz, S. L., Cui, P., Čabart, P., et al. (2020) · Genome Biology · doi:10.1186/s13059-020-02040-0 · Cited by 43 · see citing works

Psychogenetic, genetic and epigenetic mechanisms in Candida auris: Role in drug resistance

Rabaan, A. A., Eljaaly, K., Alfouzan, W. A., Mutair, A. A., Alhumaid, S., Alfaraj, A. H., Aldawood, Y., Alsaleh, A. A., Albayat, H., Azmi, R. A., et al. (2023) · Journal of Infection and Public Health · doi:10.1016/j.jiph.2022.12.012 · Cited by 14 · see citing works

Exome study of single nucleotide variations in patients with syndromic and non-syndromic autism reveals potential candidate genes for diagnostics and novel single nucleotide variants

Belenska-Todorova, L., Zamfirov, M., Todorov, T., Atemin, S., Sleptsova, M., Pavlova, Z., Kadiyska, T., Maver, A., Peterlin, B., & Todorova, A. (2025) · Cells · doi:10.3390/cells14120915 · Cited by 5 · see citing works

Histone modifications and depression: epigenetic mechanisms, therapeutic targets, and translational outlook

Lv, L.-Z., Wang, Z.-D., Ren, J.-J., Li, L.-H., Liu, X.-B., Li, J.-L., Zhu, H., Jiang, B., Han, Y.-P., Zhou, X.-M., et al. (2026) · Frontiers in Genetics · doi:10.3389/fgene.2025.1722453 · Cited by 7 · see citing works

The clinical use of epigenetics in psychiatry: a narrative review of epigenetic mechanisms, key candidate genes, and precision psychiatry

Montel Hayes, R., Mason, C. E., & Miller, J. J. (2025) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2025.1671122 · Cited by 5 · see citing works

Structural and functional basis of PU.1-BAF interaction enables targeting of lineage-specific transcription

Sadalge, D., Clasman, J. R., Topal, S., Musser, D., Von der Porten, L., Wu, S., Schultz, S. E., Austin, W., Huang, D., Gao, Y.-D., et al. (2025) · doi:10.1101/2025.08.01.667454 · Cited by 2 · see citing works

Epigenetic Rewiring of Enhancer–Promoter Interactions in Cancer: Mechanisms and Therapeutic Implications

Choppavarapu, L., Nosirov, B., Kahn, M., & Jin, V. X. (2026) · Cancers · doi:10.3390/cancers18213416

Comparative analysis of linker histone H1, MeCP2, and HMGD1 on nucleosome stability and target site accessibility

Riedmann, C., & Fondufe‐Mittendorf, Y. N. (2016) · Scientific Reports · doi:10.1038/srep33186 · Cited by 22 · see citing works

HMGN1 and 2 remodel core and linker histone tail domains within chromatin

Murphy, K. J., Cutter, A. R., He, F., et al. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx579 · Cited by 68 · see citing works

Regulated nucleosome mobility and the histone code

Cosgrove, M. S., Boeke, J. D., & Wolberger, C. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb851 · Cited by 421 · see citing works

Histone tail network and modulation in a nucleosome

Tsunaka, Y., Furukawa, A., & Nishimura, Y. (2022) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2022.102436 · Cited by 26 · see citing works

Acetylation of Histone H3 Lysine 56 Abolishes Linker Histone Regulation of Transcription Factor Binding

Bernier, M. W., Luo, Y., Nwole, K., et al. (2015) · Biophysical Journal · doi:10.1016/j.bpj.2014.11.2967