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RNA targets of wild-type and mutant FET family proteins
Open accessAbstract
FUS, EWSR1 and TAF15, constituting the FET protein family, are abundant, highly conserved RNA-binding proteins with important roles in oncogenesis and neuronal disease, yet their RNA targets and recognition elements are unknown. Using PAR-CLIP, we defined global RNA targets for all human FET proteins and two ALS-causing human FUS mutants. FET members showed similar binding profiles, whereas FUS mutants showed a drastically altered binding pattern, consistent with changes in subcellular localization.
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“We found only one instance in which the RNAcompete motif did not have a significant and positive AUROC to at least one corresponding in vivo data set: the RNAcompete motif for FUS produced an AUROC <0.5 when compared to in vivo crosslinking-based data for both FUS and its paralogue TAF15”
From A compendium of RNA-binding motifs for decoding gene regulation (2013) · cites this paper as [14]
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Metadata
- Authors
- Hoell, J. I., Larsson, E., Runge, S., Nusbaum, J. D., Duggimpudi, S., Farazi, T. A., Hafner, M., Borkhardt, A., Sander, C., & Tuschl, T.
- Affiliations
- Howard Hughes Medical Institute (US)
- Memorial Sloan Kettering Cancer Center (US)
- Heinrich Heine University Düsseldorf (DE)
- Corresponding author
- Sander, Chris
- Tuschl, Thomas
- ORCID
- Venue
- Nature Structural & Molecular Biology
- Published
- 2011-11-13
- Volume
- 18
- Issue
- 12
- Pages
- 1428-1431
- ISSN
- 1545-9985 (ISSN-L)
- 1545-9993
- PMC
- PMC3230689
- OpenAlex
- W2038438413
- Cited by
- 350
- References
- 15
- Citations by year
- 2026: 9 · 2025: 10 · 2024: 17 · 2023: 18 · 2022: 21 · 2021: 29 · 2020: 26 · 2019: 16 · 2018: 22 · 2017: 22 · 2016: 32 · 2015: 29 · 2014: 29 · 2013: 30 · 2012: 39
- FWCI
- 12.84
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Structural & Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Howard Hughes Medical Institute
- National Institute of Mental Health (MH08442, R01MH080442)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Health Sciences › Medicine › Clinical Neurology › Amyotrophic Lateral Sclerosis Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- FUS, EWSR1, TAF15, RNA-binding proteins, RNA targets, amyotrophic lateral sclerosis, FUS mutations, subcellular localization, PAR-CLIP, RNA-protein interactions
- MeSH terms
- Amyotrophic Lateral Sclerosis, Base Sequence, Binding Sites, Calmodulin-Binding Proteins, Humans, Mutation, RNA, Messenger, Sequence Alignment, RNA-Binding Proteins, Sequence Analysis, DNA, RNA-Binding Protein FUS, RNA-Binding Protein EWS, TATA-Binding Protein Associated Factors, HEK293 Cells
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