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The Mediator complex regulates enhancer-promoter interactions

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Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF

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Transcription factor competition at the γ-globin promoters controls hemoglobin switching

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Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation

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HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization

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FACT maintains chromatin architecture and thereby stimulates RNA polymerase II pausing during transcription in vivo.

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Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis

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Repair of DNA double-strand breaks leaves heritable impairment to genome function

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Epigenetic and Transcriptional Control of Erythropoiesis

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Active regulatory elements recruit cohesin to establish cell specific chromatin domains

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Mechanisms of Enhancer-Mediated Gene Activation in the Context of the 3D Genome

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Three‐dimensional genome structure and function

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Deciphering the multifaceted roles of TET proteins in T‐cell lineage specification and malignant transformation

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A lncRNA identifies Irf8 enhancer element in negative feedback control of dendritic cell differentiation

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Making connections: enhancers in cellular differentiation

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Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study

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Intra- and interchromosomal contact mapping reveals the Igh locus has extensive conformational heterogeneity and interacts with B-lineage genes

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Natural and Experimental Rewiring of Gene Regulatory Regions

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Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation

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Deciphering histone mark-specific fine-scale chromatin organization at high resolution with Micro-C-ChIP

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Myogenic Response to Increasing Concentrations of Ammonia Differs between Mammalian, Avian, and Fish Species: Cell Differentiation and Genetic Study

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DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

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Assessment of Multiway Interactions with Tri-C

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Facilitators may represent a new class of regulatory elements

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scGrapHiC: deep learning-based graph deconvolution for Hi-C using single cell gene expression

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Epigenetic Regulation of Erythropoiesis: From Developmental Programs to Therapeutic Targets

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The 3D genome landscape: Diverse chromosomal interactions and their functional implications

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Contributions of transcriptional noise to leukaemia evolution: KAT2A as a case-study

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The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies

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HiCAR: Analysis of Open Chromatin Associated Long‐range Chromatin Interaction Using Low‐Input Materials

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Chromosome conformation capture approaches to investigate 3D genome architecture in Ankylosing Spondylitis

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Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C

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Suv39h-catalysed H3K9me3 is critical for euchromatic genome organisation and the maintenance of gene transcriptionPreprint

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Ancient genomic linkage couples metabolism with erythroid developmentPreprint

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Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation-specific sensitivity to cohesin depletion

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Translocations can drive expression changes of multiple genes in regulons covering entire chromosome arms

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Mapping 3D genome organization at nucleosome-scale with Micro-C and Region Capture Micro-C (RCMC)

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Genome Reorganization during Erythroid Differentiation

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Context-dependent transcriptional remodeling of TADs during differentiationPreprint

Chahar, S., Zouari, Y. B., Salari, H., Molitor, A., Kobi, D., Maroquenne, M., Erb, C., Mossler, A., Karasu, N., Jost, D., et al. (2022) · bioRxiv · doi:10.1101/2022.07.01.498405 · Cited by 4 · see citing works

Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation

Paulsen, J., Ali, T. M. L., Nekrasov, M., Delbarre, E., Baudement, M.-O., Kurscheid, S., Tremethick, D. J., & Collas, P. (2019) · Nature Genetics · doi:10.1038/s41588-019-0392-0 · Cited by 140 · see citing works

Transcription induces context-dependent remodeling of chromatin architecture during differentiation

Chahar, S., Zouari, Y. B., Salari, H., Molitor, A. M., Kobi, D., Maroquenne, M., Erb, C., Mossler, A., Karasu, N., Jost, D., et al. (2023) · PLoS Biology · doi:10.1371/journal.pbio.3002424 · Cited by 21 · see citing works