Gene expression and functional deficits underlie TREM2-knockout microglia responses in human models of Alzheimer’s disease
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The discovery of TREM2 as a myeloid-specific Alzheimer’s disease (AD) risk gene has accelerated research into the role of microglia in AD. While TREM2 mouse models have provided critical insight, the normal and disease-associated functions of TREM2 in human microglia remain unclear. To examine this question, we profile microglia differentiated from isogenic, CRISPR-modified TREM2-knockout induced pluripotent stem cell (iPSC) lines. By combining transcriptomic and functional analyses with a chimeric AD mouse model, we find that TREM2 deletion reduces microglial survival, impairs phagocytosis of key substrates including APOE, and inhibits SDF-1α/CXCR4-mediated chemotaxis, culminating in an impaired response to beta-amyloid plaques in vivo. Single-cell sequencing of xenotransplanted human microglia further highlights a loss of disease-associated microglial (DAM) responses in human TREM2 knockout microglia that we validate by flow cytometry and immunohistochemistry. Taken together, these studies reveal both conserved and novel aspects of human TREM2 biology that likely play critical roles in the development and progression of AD.
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TREM2 is required for the conversion of microglia from a homeostatic to a disease activated state.
“TREM2 is required for the conversion of microglia from a homeostatic to a disease activated state [14, 15]”
From TREM2/PLCγ2 signalling in immune cells: function, structural insight, and potential therapeutic modulation (2021) · cites this paper as [15]
The Discussion says TREM2 is “partially required” for transition from homeostatic microglia into disease-associated clusters. The Results also report that TREM2-knockout human microglia fail to activate normally around amyloid plaques. The claim captures TREM2’s role but overstates the paper’s qualified finding as an absolute requirement. (LLM, conf=0.86)
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Eggen, B. J. L., & Kooistra, S. M. (2026) · Nature Reviews Neuroscience · doi:10.1038/s41583-026-01066-w · Cited by 6 · see citing works
Penning, A., Snoeck, S., Ormaechea, O. R., Ayyildiz, D., Polzer, O., Buitrago-Arango, M., Capobianco, R., de Winter, F., Balusu, S., Verhaagen, J., et al. (2026) · Acta Neuropathologica Communications · doi:10.1186/s40478-026-02228-8 · Cited by 6 · see citing works
Alzheimer’s genetic risk factor CASS4 controls microglial focal adhesion biology and amyloidosis
Walsh, A. E., Davis, B. A., Samuels, J. D., Mills, W. A., Thanos, J. M., Johnson, A. M., Moore, K. A., Puchalski, M. A., Steacy, E. J., Wendell, B. W., et al. (2026) · Journal of Experimental Medicine · doi:10.1084/jem.20260104
- Authors
- McQuade, A., Kang, Y. J., Hasselmann, J., Jairaman, A., Sotelo, A., Coburn, M., Shabestari, S. K., Chadarevian, J. P., Fote, G., Tu, C. H., Danhash, E., Silva, J., Martinez, E., Cotman, C., Prieto, G. A., Thompson, L. M., Steffan, J. S., Smith, I., Davtyan, H., Cahalan, M., Cho, H., & Blurton-Jones, M.
- Affiliations
- University of California, Irvine (US)
- University of North Carolina at Charlotte (US)
- Corresponding author
- Blurton-Jones, Mathew
- ORCID
- McQuade, Amanda
- Kang, You Jung
- Hasselmann, Jonathan
- Jairaman, Amit
- Coburn, Morgan
- Shabestari, Sepideh Kiani
- Chadarevian, Jean Paul
- Fote, Gianna
- Tu, Christina H.
- Danhash, Emma
- Cotman, Carl
- Prieto, G. Aleph
- Thompson, Leslie M.
- Steffan, Joan S.
- Smith, Ian
- Davtyan, Hayk
- Cahalan, Michael
- Cho, Hansang
- Blurton-Jones, Mathew
- Venue
- Nature Communications
- Published
- 2020-10-23
- Volume
- 11
- Issue
- 1
- Pages
- 5370-5370
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC7584603
- OpenAlex
- W3094535741
- Cited by
- 361
- References
- 27
- Citations by year
- 2026: 55 · 2025: 69 · 2024: 77 · 2023: 62 · 2022: 56 · 2021: 41 · 2020: 1
- FWCI
- 15.49
- Type
- journal article
- Language
- en
- Update notices
- correction (2023-03-02)
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NS082174)
- Foundation for the National Institutes of Health (AG00096, AG000096)
- HD Care
- Cure Alzheimer’s Fund
- California Institute for Regenerative Medicine (RT3-07893)
- U.S. Department of Health & Human Services | NIH | National Institute on Aging (AG016573)
- Susan Scott Foundation
- Topics
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Inflammasome and immune disorders
- Keywords
- TREM2, Alzheimer's disease, microglia, disease-associated microglia, microglial survival, phagocytosis, apolipoprotein E, amyloid plaques, iPSC-derived microglia, chimeric mouse model, xenotransplantation, single-cell transcriptomics, gene expression
- MeSH terms
- Alzheimer Disease, Animals, Brain, Cell Line, Chemotaxis, Disease Models, Animal, Female, Gene Expression Regulation, Male, Membrane Glycoproteins, Mice, Inbred BALB C, Mice, Transgenic, Phagocytosis, Receptors, Immunologic, Amyloid beta-Peptides, Cell Death, Microglia, Mice, Knockout, Receptors, CXCR4, Genetic Predisposition to Disease, Mice, Chemokine CXCL12, Gene Knockout Techniques, Plaque, Amyloid, Transcriptome
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