Cited by 82Muscle Physiology and DisordersMitochondrial Function and PathologyAutophagy in Disease and Therapy

Disuse-associated loss of the protease Lonp1 in muscle impairs mitochondrial function and causes reduced skeletal muscle mass and strength

Open access
Xu, Zhisheng, Fu, Tingting, Guo, Qiqi, Zhou, Danxia, Sun, Wanping, Zhou, Zheng, Chen, Xinyi, Zhang, Jingzi +12 more·2022·Nature Communications

Abstract

Mitochondrial proteolysis is an evolutionarily conserved quality-control mechanism to maintain proper mitochondrial integrity and function. However, the physiological relevance of stress-induced impaired mitochondrial protein quality remains unclear. Here, we demonstrate that LONP1, a major mitochondrial protease resides in the matrix, plays a role in controlling mitochondrial function as well as skeletal muscle mass and strength in response to muscle disuse. In humans and mice, disuse-related muscle loss is associated with decreased mitochondrial LONP1 protein. Skeletal muscle-specific ablation of LONP1 in mice resulted in impaired mitochondrial protein turnover, leading to mitochondrial dysfunction. This caused reduced muscle fiber size and strength. Mechanistically, aberrant accumulation of mitochondrial-retained protein in muscle upon loss of LONP1 induces the activation of autophagy-lysosome degradation program of muscle loss. Overexpressing a mitochondrial-retained mutant ornithine transcarbamylase (ΔOTC), a known protein degraded by LONP1, in skeletal muscle induces mitochondrial dysfunction, autophagy activation, and cause muscle loss and weakness. Thus, these findings reveal a role of LONP1-dependent mitochondrial protein quality-control in safeguarding mitochondrial function and preserving skeletal muscle mass and strength, and unravel a link between mitochondrial protein quality and muscle mass maintenance during muscle disuse.

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Written from the paper’s full text.

TL;DR

Disuse-related muscle loss in mice and humans is associated with decreased mitochondrial LONP1, and skeletal muscle-specific loss of LONP1 impairs mitochondrial protein turnover, mitochondrial function, and autophagy regulation, causing reduced muscle mass and strength. The findings link LONP1-dependent mitochondrial proteostasis to skeletal muscle maintenance during disuse.

Key findings

  • Denervation and immobilization in mice, as well as supraspinatus muscle atrophy in humans, were accompanied by decreased mitochondrial LONP1 protein; in 9 rotator cuff tear patients, LONP1 and CLPP were reduced in the atrophy group (mean occupation ratio 0.50) versus the non-atrophy group (mean ratio 0.76) and positively correlated with occupation ratios.
  • Skeletal muscle-specific LONP1 knockout mice showed impaired muscle growth, reduced myofiber size, reduced grip strength, and tetanic forces reduced to less than 50% in 10-week-old EDL muscles; they also ran for significantly shorter time and distance (~75%) and had ~56% higher blood lactate after exercise than WT controls.
  • LONP1 loss caused mitochondrial structural abnormalities, reduced pyruvate/succinate-driven and ADP-stimulated respiration, lower ATP levels, and impaired mitochondrial protein turnover, without changes in mitochondrial DNA content or biogenesis markers.
  • LONP1 deficiency activated autophagy-lysosome degradation without affecting protein synthesis or ubiquitin-mediated degradation; PARK7 was identified as a LONP1 substrate, and Park7 knockdown reduced autophagy flux in LONP1 KO myotubes. Overexpressing mitochondrial-retained ΔOTC recapitulated mitochondrial dysfunction, autophagy activation, muscle loss, and weakness, while AAV-LONP1 reduced ΔOTC and LC3-II and improved respiration and fiber size.

Methods

  • Mouse models included denervation and hindlimb immobilization, skeletal muscle-specific Lonp1 knockout (HSA-Cre; LONP1 mKO), AAV-Cre-mediated acute LONP1 deletion in mature muscle, MCK-ΔOTC transgenic mice, MitoTimer reporter mice, and mt-Keima reporter mice; primary myoblasts/myotubes were used for in vitro LONP1 loss-of-function.
  • Human supraspinatus muscle samples were collected from 9 rotator cuff tear patients who underwent repair surgery; atrophy was assessed by MRI-based occupation ratio, and patients were divided into non-atrophy (mean ratio 0.76) and atrophy (mean ratio 0.50) groups.
  • Main analyses included Western blotting, RT-qPCR, RNA-seq, iTRAQ mitochondrial proteomics, transmission electron microscopy, mitochondrial respiration, BN-PAGE, ATP assay, mitochondrial DNA quantification, SUnSET protein synthesis, autophagy flux assays, cycloheximide chase, co-immunoprecipitation, histology, grip strength, tetanic contraction, and exercise tests; statistics used two-tailed unpaired Student’s t test, one-way ANOVA with Fisher’s LSD post-hoc test, or Pearson’s correlation.

Limitations

  • The paper states that the mechanism whereby LONP1 protein is repressed in disused muscle was not fully delineated, and suggests LONP1 may undergo auto-degradation under stress.
  • The paper states that it cannot exclude the possibility that LONP1 acts through other mechanisms besides PARK7 to regulate autophagy, and notes a discrepancy with a previous PINK1-related LONP1 knockdown study possibly due to different techniques or cell types.
  • The paper states that future studies are needed to delineate LONP1 signaling in muscle mitochondrial stress response and systemic metabolism; evident from the text, the human analysis is limited to 9 patients and is cross-sectional, and many mouse experiments used male mice, with no statistical methods used to predetermine sample sizes.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1038/s41467-022-28557-5

Cites

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Claims the paper makes

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  • Findingown data

    In humans and mice, disuse-related muscle loss is associated with decreased mitochondrial LONP1 protein.

    “In humans and mice, disuse-related muscle loss is associated with decreased mitochondrial LONP1 protein.”
    • Also stated in: § Disuse-related muscle loss in mice and humans is associated with decreased mitochondrial LONP1 protein · boosted
      “Overall, these findings demonstrate that disuse-related muscle loss in mice and humans is associated with decreased mitochondrial proteases, and suggest that LONP1 may act as an early sensor in the control circuitry during disuse-induced muscle loss.”
    Quote in the paperSubstantial claim
  • Findingown data

    Protein synthesis rate is not different in LONP1 mKO mice compared with WT controls.

    “We also monitored protein synthesis rate in vivo by using the SUnSET technique, and we found protein synthesis was not different in LONP1 mKO mice compared with that in WT controls (Fig. 4d and Supplementary Fig. 5d).”
    Quote in the paperSubstantial claim
  • Findingown data

    No change in hepatic expression of growth hormone Igf1 or Fos genes is found in LONP1 mKO mice.

    “Notably, we found no change in the hepatic expression of growth hormone Igf1 or Fos genes (Supplementary Fig. 2g).”
    Quote in the paperNot a substantial claim
  • Findingown data

    Expression of ubiquitin degradation genes (e.g. MAFbx, MuRF1) is increased at early stages of denervation.

    “increased expression of ubiquitin degradation genes (e.g. MAFbx, MuRF1) were also seen at early stages of denervation (Supplementary Fig. 7d)”
    Quote in the paperNot a substantial claim
  • Findingown data

    There is no difference in myotube differentiation between Cre-expressing and control myotubes.

    “Notably, we observed no differences in myotube differentiation between two groups (Fig. 5h).”
    Quote in the paperNot a substantial claim
  • May combine two claims. 60
  • Classified as probably not a substantial claim. 47
  • May combine two claims.

    Findingown data

    Overexpressing a mitochondrial-retained mutant ornithine transcarbamylase (ΔOTC) in skeletal muscle induces mitochondrial dysfunction, autophagy activation, and causes muscle loss and weakness.

    “Overexpressing a mitochondrial-retained mutant ornithine transcarbamylase (ΔOTC), a known protein degraded by LONP1, in skeletal muscle induces mitochondrial dysfunction, autophagy activation, and cause muscle loss and weakness.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Starting at 5 days following denervation, LONP1 protein expression gradually and significantly decreases in mouse gastrocnemius and tibialis anterior muscles, along with reductions in muscle weight.

    “Starting at 5 days following denervation, we observed gradual and significant decreases in the protein expression of mitochondrial protease LONP1 along with apparent reductions in gastrocnemius (GC) and tibialis anterior (TA) muscle weight (Fig. 1a, b and Supplementary Fig. 1a).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    CLPP and OPA1 protein levels decrease only at later stages of denervation-induced muscle loss, whereas MFN1, MFN2, and DRP1 levels remain unchanged during denervation.

    “Notably, we found decreased levels of mitochondrial protease CLPP and dynamic protein OPA1 only at later stages of denervation-induced muscle loss (Fig. 1a, b), whereas the levels of other mitochondrial dynamic proteins MFN1, MFN2, and DRP1 remained unchanged during the denervation process (Fig. 1a, b).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    LONP1 protein expression decreases in skeletal muscle after immobilization-induced muscle disuse in mice, correlating with significant muscle loss.

    “We confirmed that LONP1 protein expression decreased in skeletal muscle after immobilization-induced muscle disuse (Fig. 1c, d), correlating with significant muscle loss (Supplementary Fig. 1b), whereas no decreases in the protein levels of CLPP, OPA1, MFN1, MFN2, and DRP1 were observed during the immobilization process (Fig. 1c, d and Supplementary Fig. 1c, d).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    OPA1 protein levels are not different between atrophy and non-atrophy groups and do not exhibit a significant correlation with occupation ratios.

    “In contrast, the levels of OPA1 protein were not different between atrophy and non-atrophy groups, and neither exhibited a significant correlation with occupation ratios (Fig. 1g and Supplementary Fig. 1f, g).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Relative mitochondrial area per muscle fiber area and average mitochondrial size are not different in LONP1 mKO muscle compared with WT controls.

    “The quantitative EM analysis revealed that the relative mitochondrial area per muscle fiber area and average mitochondrial size were not different in LONP1 mKO muscle compared with WT controls (Supplementary Fig. 3a,b).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Mitochondrial DNA content, Tim23 protein levels, and PGC-1α transcripts are not different in LONP1 mKO muscle relative to WT controls.

    “Similarly, the mitochondrial DNA content and Tim23 protein levels, as well as PGC-1α transcripts were not different in LONP1 mKO muscle relative to WT controls (Fig. 3c and Supplementary Fig. 3c, d).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Mice with muscle-specific knockout of Lonp1 are born at normal Mendelian ratios and are indistinguishable from WT littermates during the first 2 weeks of postnatal life.

    “Mice with muscle-specific knockout of Lonp1 were born at normal Mendelian ratios and were indistinguishable from their WT littermates during the first 2 weeks of postnatal life.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    AAV-Cre-mediated deletion of LONP1 in skeletal muscle results in lower levels of LONP1 but not CLPP protein.

    “Compared to Lonp1f/f muscle injected with control AAV-GFP viruses, AAV-Cre-mediated deletion of LONP1 in skeletal muscle resulted in lower levels of LONP1 but not CLPP protein (Fig. 5a).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Acute deletion of LONP1 in mature muscle causes muscle loss and weakness.

    “Acute deletion of LONP1 in mature muscle leads to autophagy activation and causes muscle loss and weakness.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Mitochondrial autophagy is significantly increased at 2 weeks of age and becomes more dramatic at 6 weeks of age in LONP1 mKO mice.

    “We found a significant increase in mitochondrial autophagy already at 2 weeks of age that became more dramatic at 6 weeks of age in LONP1 mKO mice (Fig. 4f, g and Supplementary Fig. 5e).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LONP1 mKO mice can breed successfully and show similar survival as WT littermates at least up to 1.5 years of age.

    “The LONP1 mKO mice could breed successfully and showed the similar survival as respective WT littermates at least up to 1.5 years of age.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Ablation of LONP1 in skeletal muscle results in up-regulation of 982 genes and down-regulation of 940 genes.

    “Ablation of LONP1 in skeletal muscle resulted in the up-regulation of 982 genes and the down-regulation of 940 genes.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LONP1 mKO muscles show remarkable heterogeneity in mitochondrial structure, with disturbed mitochondrial ultrastructure and abnormal cristae organization at 2 weeks of age that persists at 6 weeks.

    “However, this EM analysis of LONP1 mKO muscles revealed remarkable heterogeneity in mitochondrial structure, with many disturbed mitochondrial ultrastructure that has abnormal cristae organization already at 2 weeks of age that persisted at 6 weeks of age in LONP1 mKO mice (Fig. 3a, b).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Histological analysis of muscles from LONP1 mKO mice reveals normal muscle architecture and absence of myofiber degeneration features such as center-nucleated fibers.

    “Histological analysis of muscles revealed normal muscle architecture and absence of myofiber degeneration features such as center-nucleated fibers (Supplementary Fig. 2d).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    AAV-based LONP1 ablation in Lonp1f/f muscle causes muscle weight loss and muscle weakness.

    “Consistent with the results from LONP1 mKO mice, AAV-based LONP1 ablation in Lonp1f/f muscle also caused muscle weight loss and muscle weakness (Fig. 5b–d).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LONP1 mKO mice have a higher RER than WT controls during exercise, accompanied by reduced exercise tolerance.

    “Interestingly, LONP1 mKO mice had a higher RER than WT controls during exercise, and this was accompanied by reduced exercise tolerance (Fig. 2i).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    CQ treatment leads to a reduced number of small fibers and an increased number of larger fibers in LONP1 mKO mice.

    “Analysis of fiber size distribution revealed that CQ treatment led to a reduced number of small fibers and an increased number of larger fibers in LONP1 mKO mice (Supplementary Fig. 5f, g).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    At 6 weeks of age but not at 2 weeks of age, LONP1 mKO mice show a significant reduction in muscle weight and myofiber size under basal conditions.

    “At 6 weeks of age but not at 2 weeks of age, LONP1 mKO mice showed a significant reduction in muscle weight and myofiber size under basal conditions (Fig. 2b–e and Supplementary Fig. 2h), they showed more pronounced myofiber atrophy and muscle loss in GC and TA muscles in response to denervation (Fig. 2b–e).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    618 mitochondrial proteins were identified, of which 81 (13%) displayed 1.2 fold changes in abundance upon LONP1 deletion compared with WT mitochondria.

    “we were able to identify 618 mitochondrial proteins, of which 81 (13%) displayed 1.2 fold changes in abundance upon LONP1 deletion compared with WT mitochondria (Fig. 6c).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites MitoCarta2.033

      Not checked in the free run.

  • May combine two claims.

    Findingown data

    AAV-Cre-mediated acute deletion of LONP1 in mature muscle results in muscle loss and muscle weakness.

    “AAV-Cre-mediated acute deletion of LONP1 in mature muscle also results in muscle loss and muscle weakness.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Only an early reduction in LONP1 protein, but not mitochondrial dynamic proteins, correlates with disuse-induced muscle loss.

    “only an early reduction in LONP1 protein, but not mitochondrial dynamic proteins, correlates with disuse-induced muscle loss.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Muscle loss develops in denervation-induced and hindlimb immobilization conditions.

    “In parallel, muscle loss develops in these two conditions.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Expression of atrophy-related genes, Foxo3 protein, ubiquitinated proteins content, and AKT/mTOR signaling are not different in MCK-ΔOTC muscles compared to NTG controls.

    “we confirmed that the expression of atrophy-related genes, Foxo3 protein, and ubiquitinated proteins content, as well as the AKT/mTOR signaling were not different in MCK-ΔOTC muscles compared to NTG controls (Fig. 7h, i and Supplementary Fig. 9c, d).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Both pyruvate/succinate-driven and maximal ADP-stimulated mitochondrial respiration rates are markedly reduced in MCK-ΔOTC muscles compared to NTG controls.

    “Both pyruvate/succinate-driven and maximal ADP-stimulated mitochondrial respiration rates were markedly reduced in MCK-ΔOTC muscles compared to the NTG controls (Fig. 7b, c).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    In the non-atrophy group, the mean occupation ratio of the supraspinatus fossa by the muscle belly was 0.76.

    “Based on the occupation ratio, we divided the patients into two groups (non-atrophy group, mean ratio 0.76; atrophy group, mean ratio 0.50).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    PARK7 is a LONP1 substrate, and its knockdown reduces autophagy flux in LONP1-deficient muscle cells.

    “Our mechanistic studies identified PARK7 as a LONP1 substrate, which, when knocked down, reduced autophagy flux in LONP1-deficient muscle cells.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LONP1 affects muscle cell function without affecting PINK1 protein levels.

    “our data suggest that LONP1 affects on muscle cell function without affecting PINK1 protein levels.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    In the atrophy group, the mean occupation ratio of the supraspinatus fossa by the muscle belly was 0.50.

    “Based on the occupation ratio, we divided the patients into two groups (non-atrophy group, mean ratio 0.76; atrophy group, mean ratio 0.50).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Loss of muscle LONP1 activates autophagy degradation program without affecting protein synthesis and ubiquitin-mediated protein degradation.

    “loss of muscle LONP1 activates autophagy degradation program without affecting protein synthesis and ubiquitin-mediated protein degradation.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Disturbed mitochondrial proteostasis occurs under cellular stress conditions and is associated with aging and with a wide variety of human illnesses, including metabolic disorders, cancer, and neurodegenerative diseases.

    “Disturbed mitochondrial proteostasis occurs under cellular stress conditions and is associated with aging and with a wide variety of human illnesses, including metabolic disorders, cancer, and neurodegenerative diseases1,2,4,5.”
    Quote in the paperNot a substantial claim0 of 4 sources checked
    • cites [1] Deshwal, S., Fiedler, K. U. & Langer, T. Mitochondrial proteases: multifaceted regulators of mitochondrial plasticity. Annu. Rev. Biochem. 89, 501–528 (2020). source

      Not checked in the free run.

    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

    • cites [5] Mottis, A., Herzig, S. & Auwerx, J. Mitocellular communication: Shaping health and disease. Science 366, 827–832 (2019). source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    The quality of mitochondria has emerged as an important control process that regulates skeletal muscle function.

    “Recently, the quality of mitochondria has emerged as important control process that regulates skeletal muscle function20–23.”
    Quote in the paperSubstantial claim0 of 4 sources checked
    • cites [20] Chen, H. et al. Mitochondrial fusion is required for mtDNA stability in skeletal muscle and tolerance of mtDNA mutations. Cell 141, 280–289 (2010). source

      Not checked in the free run.

    • cites [21] Pereira, R. O. et al. OPA1 deficiency promotes secretion of FGF21 from muscle that prevents obesity and insulin resistance. EMBO J. 36, 2126–2145 (2017). source

      Not checked in the free run.

    • cites [22] Rodríguez-Nuevo, A. et al. Mitochondrial DNA and TLR9 drive muscle inflammation upon Opa1 deficiency. EMBO J. 37, https://doi.org/10.15252/embj.201796553 (2018). source

      Not checked in the free run.

    • cites [23] Tezze, C. et al. Age-associated loss of OPA1 in muscle impacts muscle mass, metabolic homeostasis, systemic inflammation, and epithelial senescence. Cell Metab. 25, 1374–1389.e1376 (2017). source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    Mitochondrial proteases serve as the first-line quality control by selective targeting and removal of damaged or dysfunctional mitochondrial proteins to ensure the proper functional integrity of mitochondria.

    “Mitochondrial proteases serve as the first-line quality control by selective targeting and removal of damaged or dysfunctional mitochondrial proteins to ensure the proper functional integrity of mitochondria1–4.”
    Quote in the paperSubstantial claim0 of 4 sources checked
    • cites [1] Deshwal, S., Fiedler, K. U. & Langer, T. Mitochondrial proteases: multifaceted regulators of mitochondrial plasticity. Annu. Rev. Biochem. 89, 501–528 (2020). source

      Not checked in the free run.

    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

    • cites [3] Song, J., Herrmann, J. M. & Becker, T. Quality control of the mitochondrial proteome. Nat. Rev. Mol. Cell Biol. 22, 54–70 (2021). source

      Not checked in the free run.

    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    LONP1 is a major mitochondrial protease located in the mitochondrial matrix.

    “LONP1, a major mitochondrial protease resides in the matrix”
    • Also stated in: § Introduction · plain
      “ATP-dependent mitochondrial proteases Lon protease homolog (LONP1) and Clp protease proteolytic subunit (CLPP), stationed in the mitochondrial matrix, are the center of mitochondrial protein quality control1–4.”
    Quote in the paperSubstantial claim0 of 4 sources checked
    • cites [1] Deshwal, S., Fiedler, K. U. & Langer, T. Mitochondrial proteases: multifaceted regulators of mitochondrial plasticity. Annu. Rev. Biochem. 89, 501–528 (2020). source

      Not checked in the free run.

    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

    • cites [3] Song, J., Herrmann, J. M. & Becker, T. Quality control of the mitochondrial proteome. Nat. Rev. Mol. Cell Biol. 22, 54–70 (2021). source

      Not checked in the free run.

    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    Skeletal muscle mass is controlled by a fine balance between protein synthesis and protein degradation processes triggered by changes in physical activity.

    “Skeletal muscle mass is controlled by a fine balance between protein synthesis and protein degradation processes triggered by changes in physical activity11,14,15, yet the intrinsic muscular signaling networks driving muscle mass loss particularly during the early phase of muscle disuse remain unclear.”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites [11] Rüegg, M. A. & Glass, D. J. Molecular mechanisms and treatment options for muscle wasting diseases. Annu. Rev. Pharm. Toxicol. 51, 373–395 (2011). source

      Not checked in the free run.

    • cites [14] Cohen, S., Nathan, J. A. & Goldberg, A. L. Muscle wasting in disease: molecular mechanisms and promising therapies. Nat. Rev. Drug Discov. 14, 58–74 (2015). source

      Not checked in the free run.

    • cites [15] Egerman, M. A. & Glass, D. J. Signaling pathways controlling skeletal muscle mass. Crit. Rev. Biochem. Mol. Biol. 49, 59–68 (2014). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    Skeletal muscle-specific ablation of LONP1 in mice results in impaired mitochondrial protein turnover, leading to mitochondrial dysfunction.

    “Skeletal muscle-specific ablation of LONP1 in mice resulted in impaired mitochondrial protein turnover, leading to mitochondrial dysfunction.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Physical inactivity-associated skeletal muscle loss and weakness is a major health problem and is a common consequence of a variety of disease conditions, including bed rest, chronic illness, and neuromuscular disorders.

    “Indeed, physical inactivity-associated skeletal muscle loss and weakness is a major health problem and is a common consequence of a variety of disease conditions, including bed rest, chronic illness, and neuromuscular disorders4,7,9–11, whereas exercise is effective in counteracting the effects of many chronic diseases on muscle mass and function4,12,13.”
    Quote in the paperNot a substantial claim0 of 5 sources checked
    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

    • cites [7] Segalés, J. et al. Sestrin prevents atrophy of disused and aging muscles by integrating anabolic and catabolic signals. Nat. Commun. 11, 189 (2020). source

      Not checked in the free run.

    • cites [9] Wall, B. T., Dirks, M. L. & van Loon, L. J. Skeletal muscle atrophy during short-term disuse: implications for age-related sarcopenia. Ageing Res. Rev. 12, 898–906 (2013). source

      Not checked in the free run.

    • cites [10] Moresi, V. et al. Myogenin and class II HDACs control neurogenic muscle atrophy by inducing E3 ubiquitin ligases. Cell 143, 35–45 (2010). source

      Not checked in the free run.

    • cites [11] Rüegg, M. A. & Glass, D. J. Molecular mechanisms and treatment options for muscle wasting diseases. Annu. Rev. Pharm. Toxicol. 51, 373–395 (2011). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    LONP1-dependent mitochondrial protein quality-control safeguards mitochondrial function and preserves skeletal muscle mass and strength.

    “Thus, these findings reveal a role of LONP1-dependent mitochondrial protein quality-control in safeguarding mitochondrial function and preserving skeletal muscle mass and strength, and unravel a link between mitochondrial protein quality and muscle mass maintenance during muscle disuse.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Mutations in LONP1 have been implicated in CODAS syndrome, a human genetic disease that causes multisystem malfunctions.

    “Mutations in LONP1 have been implicated in CODAS syndrome, a human genetic disease that causes multisystem malfunctions19, whereas changes in the expression levels of LONP1 under cellular stress conditions have also been reported1,2,”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [19] Strauss, K. A. et al. CODAS syndrome is associated with mutations of LONP1, encoding mitochondrial AAA+ Lon protease. Am. J. Hum. Genet. 96, 121–135 (2015). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    LONP1 plays a role in controlling mitochondrial function as well as skeletal muscle mass and strength in response to muscle disuse.

    “Here, we demonstrate that LONP1, a major mitochondrial protease resides in the matrix, plays a role in controlling mitochondrial function as well as skeletal muscle mass and strength in response to muscle disuse.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The physiological relevance of stress-induced impaired or dysregulated mitochondrial protein quality control remains unclear.
    • Rests on an assumption: It has yet to be explored whether LONP1-mediated mitochondrial protein quality control plays a role in sensing skeletal muscle stress and regulating its function.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    In mammals, several mitochondrial regulatory proteins such as aconitase (ACO), cytochrome c oxidase isoform (Cox4i1), steroidogenic acute regulatory protein (STAR), and transcription factor A (TFAM) have been identified as LONP1 substrates under basal or stress conditions.

    “In mammals, several mitochondrial regulatory proteins such as aconitase (ACO), cytochrome c oxidase isoform (Cox4i1), steroidogenic acute regulatory protein (STAR), and transcription factor A (TFAM) have been identified as LONP1 substrates under basal or stress conditions2,4,16,17.”
    Quote in the paperNot a substantial claim0 of 4 sources checked
    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

    • cites [16] Bota, D. A. & Davies, K. J. Lon protease preferentially degrades oxidized mitochondrial aconitase by an ATP-stimulated mechanism. Nat. Cell Biol. 4, 674–680 (2002). source

      Not checked in the free run.

    • cites [17] Lu, B. et al. Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease. Mol. Cell 49, 121–132 (2013). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Changes in the expression levels of LONP1 under cellular stress conditions have been reported.

    “whereas changes in the expression levels of LONP1 under cellular stress conditions have also been reported1,2,”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [1] Deshwal, S., Fiedler, K. U. & Langer, T. Mitochondrial proteases: multifaceted regulators of mitochondrial plasticity. Annu. Rev. Biochem. 89, 501–528 (2020). source

      Not checked in the free run.

    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Embryonic lethality of mice with deletion of the Lonp1 gene highlights the essential role of LONP1 for life.

    “The embryonic lethality of mice with deletion of the Lonp1 gene further highlighted the essential role of LONP1 for life18.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [18] Quirós, P. M. et al. ATP-dependent Lon protease controls tumor bioenergetics by reprogramming mitochondrial activity. Cell Rep. 8, 542–556 (2014). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    LONP1 is an evolutionarily conserved serine peptidase that controls mitochondrial protein quality from yeast to human.

    “LONP1 is an evolutionarily conserved serine peptidase that controls mitochondrial protein quality from yeast to human1–4.”
    Quote in the paperNot a substantial claim0 of 4 sources checked
    • cites [1] Deshwal, S., Fiedler, K. U. & Langer, T. Mitochondrial proteases: multifaceted regulators of mitochondrial plasticity. Annu. Rev. Biochem. 89, 501–528 (2020). source

      Not checked in the free run.

    • cites [2] Quirós, P. M., Langer, T. & López-Otín, C. New roles for mitochondrial proteases in health, ageing and disease. Nat. Rev. Mol. Cell Biol. 16, 345–359 (2015). source

      Not checked in the free run.

    • cites [3] Song, J., Herrmann, J. M. & Becker, T. Quality control of the mitochondrial proteome. Nat. Rev. Mol. Cell Biol. 22, 54–70 (2021). source

      Not checked in the free run.

    • cites [4] Gan, Z., Fu, T., Kelly, D. P. & Vega, R. B. Skeletal muscle mitochondrial remodeling in exercise and diseases. Cell Res. 28, 969–980 (2018). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    Loss of LONP1 causes reduced muscle fiber size and strength.

    “This caused reduced muscle fiber size and strength.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Loss of LONP1 alters skeletal muscle mitochondrial function without affecting mitochondrial biogenesis.

    “These data indicate that loss of LONP1 alters skeletal muscle mitochondrial function without affecting mitochondrial biogenesis.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Absence of muscle LONP1 changes muscle fiber size and strength and compromises muscle performance.

    “Together, these results demonstrate a change in muscle fiber size and strength in the absence of muscle LONP1 that compromises muscle performance.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    LONP1 ablation does not affect muscle protein synthesis and ubiquitin-mediated protein degradation.

    “Together, these data indicate that LONP1 ablation does not affect muscle protein synthesis and ubiquitin-mediated protein degradation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Loss of LONP1 results in impaired muscle growth and muscle weakness.

    “Thus, loss of LONP1 results in impaired muscle growth and muscle weakness.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Down-regulation of mitochondrial LONP1, along with impaired mitochondrial protein turnover, accompanies the process of disuse-induced skeletal muscle loss.

    “Thus, these data demonstrate that down-regulation of the mitochondrial LONP1, along with impaired mitochondrial protein turnover, accompanies the process of disuse-induced skeletal muscle loss.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    LONP1 mKO mice consume less fat and depend on glucose metabolism more than WT controls during exercise.

    “Because a higher RER typically reflects a substrate shift in favor of carbohydrate metabolism, these data suggest that LONP1 mKO mice consume less fat and depend on glucose metabolism more than WT controls during exercise.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Ablation of Lonp1 neither affects muscle differentiation nor development.

    “These results indicate that ablation of Lonp1 neither affects muscle differentiation nor development.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Loss of LONP1 in mature muscles also causes autophagy activation and muscle loss.

    “Therefore, loss of LONP1 in mature muscles also causes autophagy activation and muscle loss.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Loss of LONP1-dependent mitochondrial protein quality-control in skeletal muscle triggers autophagy degradation program, leading to profound impacts on muscle mass and strength.

    “We found that loss of LONP1-dependent mitochondrial protein quality-control in skeletal muscle triggers autophagy degradation program, leading to profound impacts on muscle mass and strength.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Overexpressing a mitochondrial-retained ΔOTC protein in skeletal muscle is sufficient to induce mitochondrial dysfunction, autophagy activation, and causes muscle atrophy and weakness.

    “overexpressing a mitochondrial-retained ΔOTC protein in skeletal muscle is sufficient to induce mitochondrial dysfunction, autophagy activation, and causes muscle atrophy and weakness.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Deletion of LONP1 specifically in skeletal muscle results in impaired mitochondrial protein turnover, leading to mitochondrial dysfunction and significantly reduced muscle mass and strength.

    “Deletion of LONP1 specifically in skeletal muscle resulted in impaired mitochondrial protein turnover, leading to mitochondrial dysfunction and significant reduced muscle mass and strength.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Muscle-specific overexpression of mitochondrial-retained ΔOTC protein activates autophagy and causes muscle loss, revealing physiological relevance of imbalanced mitochondrial proteostasis.

    “Our findings that muscle-specific overexpressing mitochondrial-retained ΔOTC protein activates autophagy and causes muscle loss revealed an important physiological relevance of imbalanced mitochondrial proteostasis.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    ΔOTC is a known protein degraded by LONP1 and an established model for studying mitochondrial proteostasis imbalance.

    “a known protein degraded by LONP1 and an established model for studying mitochondrial proteostasis imbalance38–40”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites [38] Zhao, Q. et al. A mitochondrial specific stress response in mammalian cells. EMBO J. 21, 4411–4419 (2002). source

      Not checked in the free run.

    • cites [39] Jin, S. M. & Youle, R. J. The accumulation of misfolded proteins in the mitochondrial matrix is sensed by PINK1 to induce PARK2/Parkin-mediated mitophagy of polarized mitochondria. Autophagy 9, 1750–1757 (2013). source

      Not checked in the free run.

    • cites [40] Bezawork-Geleta, A., Brodie, E. J., Dougan, D. A. & Truscott, K. N. LON is the master protease that protects against protein aggregation in human mitochondria through direct degradation of misfolded proteins. Sci. Rep. 5, 17397 (2015). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Proper maintenance of mitochondria dynamics, i.e. the balance between fission and fusion, is necessary for optimal muscle mitochondrial function and fitness.

    “proper maintenance of mitochondria dynamics, i.e. the balance between fission and fusion, is necessary for optimal muscle mitochondrial function and fitness20–23,43.”
    Quote in the paperNot a substantial claim0 of 5 sources checked
    • cites [20] Chen, H. et al. Mitochondrial fusion is required for mtDNA stability in skeletal muscle and tolerance of mtDNA mutations. Cell 141, 280–289 (2010). source

      Not checked in the free run.

    • cites [21] Pereira, R. O. et al. OPA1 deficiency promotes secretion of FGF21 from muscle that prevents obesity and insulin resistance. EMBO J. 36, 2126–2145 (2017). source

      Not checked in the free run.

    • cites [22] Rodríguez-Nuevo, A. et al. Mitochondrial DNA and TLR9 drive muscle inflammation upon Opa1 deficiency. EMBO J. 37, https://doi.org/10.15252/embj.201796553 (2018). source

      Not checked in the free run.

    • cites [23] Tezze, C. et al. Age-associated loss of OPA1 in muscle impacts muscle mass, metabolic homeostasis, systemic inflammation, and epithelial senescence. Cell Metab. 25, 1374–1389.e1376 (2017). source

      Not checked in the free run.

    • cites [43] Sebastián, D. et al. Mfn2 deficiency links age-related sarcopenia and impaired autophagy to activation of an adaptive mitophagy pathway. EMBO J. 35, 1677–1693 (2016). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    Most of these findings are recapitulated in skeletal myotubes, thus are cell-autonomous.

    “most of these findings are recapitulated in skeletal myotubes, thus, are cell-autonomous.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    Heatmap analysis of duplicate samples showed similarity between replicates.

    “the heatmap analysis of the duplicate samples showed the similarity between replicates (Fig. 6d).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Mitochondrial energetic deficiency can trigger compensatory muscle fiber type switching.

    “mitochondrial energetic deficiency can trigger compensatory muscle fiber type switching42.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [42] Zechner, C. et al. Total skeletal muscle PGC-1 deficiency uncouples mitochondrial derangements from fiber type determination and insulin sensitivity. Cell Metab. 12, 633–642 (2010). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    OPA1 has important roles in regulating skeletal muscle mass and functions.

    “Both transgenic and gene knockout approaches in mice have also been used to demonstrate the important roles of OPA1 in regulating skeletal muscle mass and functions23,44,45.”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites [23] Tezze, C. et al. Age-associated loss of OPA1 in muscle impacts muscle mass, metabolic homeostasis, systemic inflammation, and epithelial senescence. Cell Metab. 25, 1374–1389.e1376 (2017). source

      Not checked in the free run.

    • cites [44] Civiletto, G. et al. Opa1 overexpression ameliorates the phenotype of two mitochondrial disease mouse models. Cell Metab. 21, 845–854 (2015). source

      Not checked in the free run.

    • cites [45] Varanita, T. et al. The OPA1-dependent mitochondrial cristae remodeling pathway controls atrophic, apoptotic, and ischemic tissue damage. Cell Metab. 21, 834–844 (2015). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    Muscle LONP1 likely serves as a mitochondrial sensor sensitive to changes in physical activity levels, linking maintenance of mitochondrial protein quality and muscle mass to physical activity.

    “our data suggest that muscle LONP1 likely serves as a mitochondrial sensor that is sensitive to changes in physical activity levels, linking maintenance of mitochondrial protein quality and muscle mass to physical activity.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Genetic ablation of LONP1 in skeletal muscle results in severe mitochondrial dysfunction and causes reduced muscle fiber size and strength, leading to a precocious aging phenotype.

    “Genetic ablation of LONP1 in skeletal muscle resulted in severe mitochondrial dysfunction and caused reduced muscle fiber size and strength, leading to a precocious aging phenotype.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    PARK7 mediates autophagy activation in LONP1-deficient cells, linking LONP1-dependent mitochondrial proteostasis to muscle cell autophagy.

    “Thus, PARK7 mediates autophagy activation in LONP1-deficient cells, thereby linking LONP1-dependent mitochondrial proteostasis to muscle cell autophagy.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    PARK7 was recently shown to regulate autophagy and be degraded by LONP1.

    “was recently shown to regulate autophagy and degraded by LONP134–37.”
    Quote in the paperSubstantial claim0 of 4 sources checked
    • cites [34] Gao, H. et al. DJ-1 protects dopaminergic neurons against rotenone-induced apoptosis by enhancing ERK-dependent mitophagy. J. Mol. Biol. 423, 232–248 (2012). source

      Not checked in the free run.

    • cites [35] Xue, R. et al. DJ-1 activates autophagy in the repression of cardiac hypertrophy. Arch. Biochem. Biophys. 633, 124–132 (2017). source

      Not checked in the free run.

    • cites [36] Lee, D. H. et al. PARK7 modulates autophagic proteolysis through binding to the N-terminally arginylated form of the molecular chaperone HSPA5. Autophagy 14, 1870–1885 (2018). source

      Not checked in the free run.

    • cites [37] Sánchez-Lanzas, R. & Castaño, J. G. Mitochondrial LonP1 protease is implicated in the degradation of unstable Parkinson’s disease-associated DJ-1/PARK 7 missense mutants. Sci. Rep. 11, 7320 (2021). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing), S4 (based).

    Interpretationreasoning

    This LONP1 mechanism likely acts as a mitochondrial sensor of cellular stress under diverse physiological and pathophysiological circumstances.

    “This LONP1 mechanism likely acts as a mitochondrial sensor of cellular stress under an array of diverse physiological and pathophysiological circumstances.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    Denervation-induced muscle disuse leads to suppressed expression of LONP1 with increased muscle autophagy and mitochondrial dysfunction.

    “Our data indicate that denervation-induced muscle disuse leads to suppressed expression of LONP1 with increased muscle autophagy and mitochondrial dysfunction, which is consistent with our observations in LONP1 mKO mice.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Multiple alterations in mitochondrial function such as mitophagy and mitochondrial dynamics can lead to reduced muscle mitochondrial energetics but resistance to high-fat-diet-induced obesity.

    “multiple alterations in mitochondrial function such as mitophagy and mitochondrial dynamics can lead to a surprising phenotype characterized by reduced muscle mitochondrial energetics, but remarkably, with resistance to high-fat-diet-induced obesity21,46.”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [21] Pereira, R. O. et al. OPA1 deficiency promotes secretion of FGF21 from muscle that prevents obesity and insulin resistance. EMBO J. 36, 2126–2145 (2017). source

      Not checked in the free run.

    • cites [46] Fu, T. et al. Mitophagy directs muscle-adipose crosstalk to alleviate dietary obesity. Cell Rep. 23, 1357–1372 (2018). source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    Muscle-specific overexpression of mitochondrial-retained ΔOTC protein is sufficient to induce mitochondrial dysfunction, autophagy activation, and cause muscle loss and weakness.

    “Together, these data demonstrate that muscle-specific overexpressing mitochondrial-retained ΔOTC protein is sufficient to induce mitochondrial dysfunction, autophagy activation, and cause muscle loss and weakness.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All animal studies were approved by the IACUC committees at the Model Animal Research Center (MARC) of Nanjing University (Approval No. GZJ07).

    “were approved by the IACUC committees at the Model Animal Research Center (MARC) of Nanjing University (Approval No. GZJ07).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    Two independent samples per group were analyzed in the RNA-seq study.

    “Two independent samples per group were analyzed.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    False discovery rate thresholds for both protein and peptide were specified at 1%.

    “False discovery rate (FDR) thresholds for both protein and peptide were specified at 1%.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Arbitrary units of target mRNA were corrected to the expression of 36b4.

    “Arbitrary units of target mRNA were corrected to the expression of 36b4.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Interpretationreasoning

    The seemingly contradictory phenotype is linked to the non-cell-autonomous role of the muscle mitochondrial stress response.

    “The seemingly contradictory phenotype is linked to the non-cell-autonomous role of the muscle mitochondrial stress response.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Identical acquisition parameters were set for all samples in the same experimental condition.

    “Identical acquisition parameters were set for all samples in the same experimental condition.”
    • Also stated in: § Measuring in vivo mitochondrial protein turnover · plain
      “Identical acquisition parameters were set for all samples in the same experimental condition.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    The immobilization procedure (splint with Velcro loop) prevents knee bending.

    “This procedure prevents knee bending, and the non-immobilized hindlimb served as controls.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Premisecitation

    Autophagy is critical for maintaining normal homeostasis of muscle mass in physiological and pathological conditions.

    “autophagy is critical for maintaining normal homeostasis of muscle mass in physiological and pathological conditions30,47–49.”
    Quote in the paperSubstantial claim0 of 4 sources checked
    • cites [30] Mammucari, C. et al. FoxO3 controls autophagy in skeletal muscle in vivo. Cell Metab. 6, 458–471 (2007). source

      Not checked in the free run.

    • cites [47] Masiero, E. et al. Autophagy is required to maintain muscle mass. Cell Metab. 10, 507–515 (2009). source

      Not checked in the free run.

    • cites [48] Castets, P. et al. Sustained activation of mTORC1 in skeletal muscle inhibits constitutive and starvation-induced autophagy and causes a severe, late-onset myopathy. Cell Metab. 17, 731–744 (2013). source

      Not checked in the free run.

    • cites [49] Moresi, V. et al. Histone deacetylases 1 and 2 regulate autophagy flux and skeletal muscle homeostasis in mice. Proc. Natl Acad. Sci. USA 109, 1649–1654 (2012). source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Equal total protein was loaded to each lane.

    “Equal total protein was loaded to each lane.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    The levels of NADH dehydrogenase subunit 1 (mitochondrial DNA) were normalized to the levels of lipoprotein lipase (genomic DNA).

    “The levels of NADH dehydrogenase subunit 1 (mitochondrial DNA) were normalized to the levels of lipoprotein lipase (genomic DNA).”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Littermate controls were used in all cases.

    “Littermate controls were used in all cases.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Informed consent was obtained from all subjects.

    “Informed consent was obtained from all subjects.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Average diameters of at least 100 myotubes were measured for each condition at three points along the length of the myotube.

    “Average diameters of at least 100 myotubes were measured for each condition at three points along the length of the myotube.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Muscle with an occupation ratio greater than 0.60 can be considered normal or non-atrophied, while values below 0.60 suggest muscle atrophy.

    “the muscle with a ratio greater than 0.60 can be considered as normal or non-atrophied, while values below 0.60 suggest muscle atrophy27.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [27] Thomazeau, H., Rolland, Y., Lucas, C., Duval, J. M. & Langlais, F. Atrophy of the supraspinatus belly. Assessment by MRI in 55 patients with rotator cuff pathology. Acta Orthop. Scand. 67, 264–268 (1996). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductnone given

    Three bright field images per dish were captured, randomized, and coded.

    “Three bright field images per dish were captured, randomized, and coded.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    PARK7 protein regulates autophagy in multiple cell types.

    “PARK7 protein has been shown to regulate autophagy in multiple cell types34–36.”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites [34] Gao, H. et al. DJ-1 protects dopaminergic neurons against rotenone-induced apoptosis by enhancing ERK-dependent mitophagy. J. Mol. Biol. 423, 232–248 (2012). source

      Not checked in the free run.

    • cites [35] Xue, R. et al. DJ-1 activates autophagy in the repression of cardiac hypertrophy. Arch. Biochem. Biophys. 633, 124–132 (2017). source

      Not checked in the free run.

    • cites [36] Lee, D. H. et al. PARK7 modulates autophagic proteolysis through binding to the N-terminally arginylated form of the molecular chaperone HSPA5. Autophagy 14, 1870–1885 (2018). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Ubiquitin-proteasome-dependent degradation is important in muscle atrophy.

    “The importance of ubiquitin-proteasome-dependent degradation in muscle atrophy has been well documented11,14,15.”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites [11] Rüegg, M. A. & Glass, D. J. Molecular mechanisms and treatment options for muscle wasting diseases. Annu. Rev. Pharm. Toxicol. 51, 373–395 (2011). source

      Not checked in the free run.

    • cites [14] Cohen, S., Nathan, J. A. & Goldberg, A. L. Muscle wasting in disease: molecular mechanisms and promising therapies. Nat. Rev. Drug Discov. 14, 58–74 (2015). source

      Not checked in the free run.

    • cites [15] Egerman, M. A. & Glass, D. J. Signaling pathways controlling skeletal muscle mass. Crit. Rev. Biochem. Mol. Biol. 49, 59–68 (2014). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductown data

    Transcriptome sequencing libraries averaged 42 million paired reads per sample, with 86.9% alignment to the mouse genome (UCSC mm10).

    “Transcriptome sequencing libraries averaged 42 million paired reads per sample, with 86.9% alignment to the mouse genome (UCSC mm10).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Images were taken in a double-blind manner.

    “Images were taken on a FEI Tecnai G2 20 Twin electron microscope equipped with an Eagle 4k CCD digital camera (FEI; USA) in a double-blind manner.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Dysfunctional mitochondrial subdomains can be segregated from mitochondria and degraded by autophagy under stress.

    “dysfunctional mitochondrial subdomains can be segregated from mitochondria and degraded by autophagy under stress54.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [54] Burman, J. L. et al. Mitochondrial fission facilitates the selective mitophagy of protein aggregates. J. Cell Biol. 216, 3231–3247 (2017). source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    Respiration rates were normalized to mitochondrial protein contents or cell number.

    “Respiration rates were determined and normalized to mitochondrial protein contents or cell number using the Datlab 5 software (Oroboros Inc., Innsbruck, Austria), the data were expressed as “pmol O2 s−1 mg mito protein−1” or “pmol O2 s−1 10−6 cells”.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All data points were used in statistical analyses.

    “All data points were used in statistical analyses.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Clinical ethical approval was obtained from the Ethical Committee of Subei People's Hospital of Jiangsu Province, Yangzhou, China (Clinical ethical approval: 2021ky-001).

    “Clinical ethical approval in comply with the Declaration of Helsinki was obtained from the Ethical Committee of Subei People’s Hospital of Jiangsu Province, Yangzhou, China (Clinical ethical approval: 2021ky-001).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Blots were normalized to α-tubulin.

    “Blots were normalized to α-tubulin.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    LONP1-dependent mitochondrial protein quality control safeguards mitochondrial health and skeletal muscle mass and strength, linking mitochondrial protein quality and muscle mass maintenance upon muscle disuse.

    “we have revealed a role of LONP1-dependent mitochondrial protein quality control in safeguarding mitochondrial health and skeletal muscle mass and strength, unraveling an unexpected functional link between mitochondrial protein quality and muscle mass maintenance upon muscle disuse.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    No statistical methods were used to predetermine sample sizes.

    “No statistical methods were used to predetermine sample sizes, and sample size (range from n = 3 to n = 10) are explicitly stated in the figure legends.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All constructs were confirmed by DNA sequencing.

    “All constructs were confirmed by DNA sequencing.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductown data

    Full-thickness rotator cuff tear was confirmed by arthroscopy before supraspinatus muscle biopsies were taken.

    “After confirmation for full-thickness rotator cuff tear by arthroscopy, supraspinatus muscle biopsies were taken at 2 cm proximal zone of muscle–tendon junction during rotator cuff repair surgery, cleaned, and flash frozen in liquid nitrogen for protein isolation.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A previous study has reported a reproducible and reliable method to define supraspinatus muscle atrophy with MRI.

    “A previous study has reported a reproducible and reliable method to define supraspinatus muscle atrophy with the help of MRI27.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [27] Thomazeau, H., Rolland, Y., Lucas, C., Duval, J. M. & Langlais, F. Atrophy of the supraspinatus belly. Assessment by MRI in 55 patients with rotator cuff pathology. Acta Orthop. Scand. 67, 264–268 (1996). source

      Not checked in the free run.

100 of 100
  • The paper relies on this without support.

    The physiological relevance of stress-induced impaired or dysregulated mitochondrial protein quality control remains unclear.

    “However, the physiological relevance of stress-induced impaired or dysregulated mitochondrial protein quality control remains unclear.”
  • The paper relies on this without support.

    The intrinsic muscular signaling networks driving muscle mass loss particularly during the early phase of muscle disuse remain unclear.

    “yet the intrinsic muscular signaling networks driving muscle mass loss particularly during the early phase of muscle disuse remain unclear.”
  • The paper relies on this without support.

    It has yet to be explored whether LONP1-mediated mitochondrial protein quality control plays a role in sensing skeletal muscle stress and regulating its function.

    “However, it has yet to be explored whether LONP1-meidated mitochondrial protein quality control plays a role in sensing skeletal muscle stress and regulating its function.”
  • The paper relies on this without support.

    The mechanisms involved in disuse-induced muscle loss and weakness are largely unknown.

    “yet the mechanisms involved in disuse-induced muscle loss and weakness are largely unknown.”
  • The paper relies on this without support.

    Physical inactivity-associated muscle loss and weakness is a major health problem and is related to a variety of chronic human diseases.

    “Physical inactivity-associated muscle loss and weakness is a major health problem and is related to a variety of chronic human diseases.”
  • The paper relies on this without support.

    Denervation-induced muscle loss is a model of disuse-induced skeletal muscle loss.

    “We next examined whether the LONP1-dependent regulation of the autophagy program is operational during denervation-induced muscle loss.”
6 of 6

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Reduced muscle mass and strength has been reported in mice with deletion of the Lonp1 gene in response to muscle disuse.

    “A reduced muscle mass and strength has been reported in mice with deletion of the Lonp1 gene in response to muscle disuse (56).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Conflicting ages for tetanic-force measurements

    Minor

    The results describe the LONP1 mKO EDL force measurements as being from 10-week-old mice, whereas the muscle tetanic contraction methods specify eight-week-old mice.

  • Stated sample-size range excludes a reported mouse group

    Minor

    The statistical methods state that figure-legend sample sizes range from 3 to 10, but the Fig. 2k legend reports as many as 13 mice per group.

  • Conflicting mt-Keima green excitation wavelengths

    Minor

    The mt-Keima figure legend specifies a 458-nm laser for the green channel, while the in vivo mt-Keima method specifies 488 nm.

3 of 3

Cites

Flagged first, then by citations

5 of the 69 references couldn’t be matched to a known paper.

Cited by

Sorted by citations

Authors
Xu, Z., Fu, T., Guo, Q., Zhou, D., Sun, W., Zhou, Z., Chen, X., Zhang, J., Liu, L., Xiao, L., Yin, Y., Jia, Y., Pang, E., Chen, Y., Pan, X., Fang, L., Zhu, M.-S., Fei, W., Lu, B., & Gan, Z.
Affiliations
  • Nanjing Drum Tower Hospital (CN)
  • Nanjing University (CN)
  • Northern Jiangsu People's Hospital (CN)
  • National Center of Biomedical Analysis (CN)
  • Model Animal Research Center (CN)
Corresponding author
Gan, Zhenji
Venue
Nature Communications
Published
2022-02-16
Volume
13
Issue
1
Pages
894-894
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4213186489
Cited by
82
References
69
Citations by year
2026: 10 · 2025: 22 · 2024: 19 · 2023: 24 · 2022: 7
FWCI
5.88
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Natural Science Foundation of China (2018YFA0800700, 31922033, 91857105, 31771291, 32071136)
  • Government of Jiangsu Province
  • Natural Science Foundation of Jiangsu Province (SWYY‐002, BK20170014 and SWYY-002, BK20170014)
  • Wuhan University
  • Nanjing University
  • Fundamental Research Funds for the Central Universities (090314380031 and 090314380035, 090314380036, 090314380035, 090314380031)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Muscle Physiology and Disorders
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
  • Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
Keywords
LONP1, mitochondrial protease, muscle disuse, mitochondrial protein quality control, mitochondrial dysfunction, skeletal muscle mass, muscle strength, ornithine transcarbamylase, muscle atrophy
MeSH terms
Proteostasis, Animals, Autophagy, Humans, Male, Mice, Inbred C57BL, Mitochondria, Muscular Atrophy, Ornithine Carbamoyltransferase, Mice, Knockout, Muscle, Skeletal, Mitochondrial Proteins, ATP-Dependent Proteases, Mice, Muscle Strength, Proteolysis

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-09.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-09.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

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