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Zebrafish relatives as models for functional comparative genetics and genomics
Abstract
Closely related species, such as danionin fishes of the Danio, Danionella and Devario genera, often differ in their biology despite their shared evolutionary history, providing a platform for defining the molecular basis for the divergence of phenotypic traits. Such an approach requires the availability of large-scale genomic data, which have been provided by recent reports detailing the genomes of several danionins. Facilitated by the large number of genetic tools that are available for manipulation of the most studied member of this subgroup - the zebrafish, Danio rerio - the danionins have emerged as a useful comparative model system. Here we review their phylogeny and outline the phenotypic traits that are distinct to individual species or genera. We highlight how functional genetic tools such as interspecies hybridization, mutagenesis and transgenesis, as well as the recently reported genome assemblies, have enabled new avenues for hypothesis-driven and technology-driven exploration that collectively establish danionins as important genetic models for understanding a wide range of evolutionary innovations.
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Stages of embryonic development of the zebrafish
Kimmel, C. B., Ballard, W. W., Kimmel, S. R., Ullmann, B., & Schilling, T. F. (1995) · Developmental Dynamics · doi:10.1002/aja.1002030302 · Cited by 12,037
The gut microbiota as an environmental factor that regulates fat storage
Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407076101 · Cited by 6,245
The zebrafish reference genome sequence and its relationship to the human genome.
Howe, K., Clark, M. D., Torroja, C. F., Torrance, J., Berthelot, C., Muffato, M., Collins, J. E., Humphray, S., McLaren, K., Matthews, L., et al. (2013) · Nature · doi:10.1038/nature12111 · Cited by 5,100
Preservation of Duplicate Genes by Complementary, Degenerative Mutations
Force, A., Lynch, M., Pickett, F. B., Amores, A., Yan, Y.-L., & Postlethwait, J. (1999) · Genetics · doi:10.1093/genetics/151.4.1531 · Cited by 3,529
Efficient genome editing in zebrafish using a CRISPR-Cas system
Hwang, W. Y., Fu, Y., Reyon, D., Maeder, M. L., Tsai, S. Q., Sander, J. D., Peterson, R. T., Yeh, J.-R. J., & Joung, J. K. (2013) · Nature Biotechnology · doi:10.1038/nbt.2501 · Cited by 2,937
Jaillon, O., Aury, J.-M., Brunet, F., Petit, J.-L., Stange-Thomann, N., Mauceli, E., Bouneau, L., Fischer, C., Ozouf-Costaz, C., Bernot, A., et al. (2004) · Nature · doi:10.1038/nature03025 · Cited by 1,966
Zebrafish hox Clusters and Vertebrate Genome Evolution
Amores, A., Force, A. G., Yan, Y., Joly, L., Amemiya, C. T., Fritz, A., Ho, R. K., Langeland, J. A., Prince, V., Wang, Y.-L., et al. (1998) · Science · doi:10.1126/science.282.5394.1711 · Cited by 1,737
TimeTree 5: An Expanded Resource for Species Divergence Times
Kumar, S., Suleski, M., Craig, J. M., Kasprowicz, A. E., Sanderford, M. D., Li, M., Stecher, G., & Hedges, S. B. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac174 · Cited by 1,549
Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate
Dehal, P., & Boore, J. L. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030314 · Cited by 1,526
Genetic compensation triggered by mutant mRNA degradation
El-Brolosy, M. A., Kontarakis, Z., Rossi, A., Kuenne, C., Günther, S., Fukuda, N., Kikhi, K., Boezio, G. L. M., Takacs, C. M., Lai, S.-L., et al. (2019) · Nature · doi:10.1038/s41586-019-1064-z · Cited by 1,028
Parichy, D. M., Elizondo, M. R., Mills, M. G., Gordon, T. N., & Engeszer, R. E. (2009) · Developmental Dynamics · doi:10.1002/dvdy.22113 · Cited by 832
Cuthill, I. C., Allen, W. L., Arbuckle, K., Caspers, B. A., Chaplin, G., Hauber, M. E., Hill, G. E., Jablonski, N. G., Jiggins, C. D., Kelber, A., et al. (2017) · Science · doi:10.1126/science.aan0221 · Cited by 793
Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate
Mullins, M. C., Hammerschmidt, M., Haffter, P., & Nüsslein‐Volhard, C. (1994) · Current Biology · doi:10.1016/s0960-9822(00)00048-8 · Cited by 764
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Braasch, I., Gehrke, A. R., Smith, J. J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., et al. (2016) · Nature Genetics · doi:10.1038/ng.3526 · Cited by 624
Zebrafish disease models in drug discovery: from preclinical modelling to clinical trials
Patton, E. E., Zon, L. I., & Langenau, D. M. (2021) · Nature Reviews Drug Discovery · doi:10.1038/s41573-021-00210-8 · Cited by 604
The molecular evolutionary basis of species formation
Presgraves, D. C. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2718 · Cited by 595
Is Genetic Evolution Predictable?
Stern, D. L., & Courtier‐Orgogozo, V. (2009) · Science · doi:10.1126/science.1158997 · Cited by 546
HOW COMMON IS HOMOPLOID HYBRID SPECIATION?: PERSPECTIVE
Schumer, M., Rosenthal, G. G., & Andolfatto, P. (2014) · Evolution · doi:10.1111/evo.12399 · Cited by 360
Masternak, K., Mühlethaler‐Mottet, A., Villard, J., Zufferey, M., Steimle, V., & Reith, W. (2000) · Genes & Development · doi:10.1101/gad.14.9.1156 · Cited by 356
Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains
WILSON, C. A., High, S. K., McCluskey, B. M., Amores, A., Yan, Y., Titus, T. A., Anderson, J., Batzel, P., Carvan, M. J., Schartl, M., et al. (2014) · Genetics · doi:10.1534/genetics.114.169284 · Cited by 347
Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system
Irion, U., Krauß, J., & Nüsslein‐Volhard, C. (2014) · Development · doi:10.1242/dev.115584 · Cited by 303
Self-citationPolygenic Sex Determination System in Zebrafish
Liew, W. C., Bártfai, R., Lim, Z., Sreenivasan, R., Siegfried, K. R., & Orbán, L. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034397 · Cited by 287
Understanding explosive diversification through cichlid fish genomics
Salzburger, W. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0043-9 · Cited by 262
Macrophages provide a transient muscle stem cell niche via NAMPT secretion
Ratnayake, D., Nguyen, P. D., Rossello, F. J., Wimmer, V. C., Tan, J. L., Galvis, L. A., Julier, Z., Wood, A. J., Boudier, T., Isiaku, A. I., et al. (2021) · Nature · doi:10.1038/s41586-021-03199-7 · Cited by 239
Self-citationAn evolutionarily conserved program of B-cell development and activation in zebrafish
Page, D. M., Wittamer, V., Bertrand, J. Y., Lewis, K. L. T., Pratt, D. N., Delgado, N., Schale, S. E., McGue, C. M., Jacobsen, B. H., Doty, A. T., et al. (2013) · Blood · doi:10.1182/blood-2012-12-471029 · Cited by 214
Saito, T., Goto-Kazeto, R., Arai, K., & Yamaha, E. (2007) · Biology of Reproduction · doi:10.1095/biolreprod.107.060038 · Cited by 213
Advancing biology through a deeper understanding of zebrafish ecology and evolution.
Parichy, D. M. (2015) · eLife · doi:10.7554/elife.05635 · Cited by 203
Kawakami, K., & Shima, A. (1999) · Gene · doi:10.1016/s0378-1119(99)00444-8 · Cited by 194
The Divergent Genomes of Teleosts
Ravi, V., & Venkatesh, B. (2018) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-030117-014821 · Cited by 193
Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae)
Tang, K. L., Agnew, M. K., Hirt, M. V., Sado, T., Schneider, L. M., Freyhof, J., Sulaiman, Z., Swartz, E. R., Vidthayanon, C., Miya, M. U., et al. (2010) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2010.05.021 · Cited by 191
Evolution of danio pigment pattern development
Parichy, D. M. (2006) · Heredity · doi:10.1038/sj.hdy.6800867 · Cited by 179
Rüber, L., Kottelat, M., Tan, H., Ng, P. K., & Britz, R. (2007) · BMC Evolutionary Biology · doi:10.1186/1471-2148-7-38 · Cited by 165
The genomics of coloration provides insights into adaptive evolution
Orteu, A., & Jiggins, C. D. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-0234-z · Cited by 153
Zebrafish Pigment Pattern Formation: Insights into the Development and Evolution of Adult Form
Patterson, L. B., & Parichy, D. M. (2019) · Annual Review of Genetics · doi:10.1146/annurev-genet-112618-043741 · Cited by 151
Asymmetric division of clonal muscle stem cells coordinates muscle regeneration in vivo
Gurevich, D., Nguyen, P. D., Siegel, A. L., Ehrlich, O., Sonntag, C., Phan, J. M. N., Berger, S., Ratnayake, D., Hersey, L., Berger, J., et al. (2016) · Science · doi:10.1126/science.aad9969 · Cited by 146
Self-citationPigmentation Pathway Evolution after Whole-Genome Duplication in Fish
Braasch, I., Brunet, F., Volff, J., & Schartl, M. (2009) · Genome Biology and Evolution · doi:10.1093/gbe/evp050 · Cited by 129
Assortative preferences for stripes in danios
Rosenthal, G. G., & Ryan, M. J. (2005) · Animal Behaviour · doi:10.1016/j.anbehav.2005.02.005 · Cited by 127
A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.
Braasch, I., Peterson, S. M., Desvignes, T., McCluskey, B. M., Batzel, P., & Postlethwait, J. H. (2015) · Journal of Experimental Zoology Part B: Molecular and Developmental Evolution · doi:10.1002/jez.b.22589 · Cited by 122
Wong, T., Saito, T., Crodian, J. S., & Collodi, P. (2011) · Biology of Reproduction · doi:10.1095/biolreprod.110.088427 · Cited by 121
Threespine Stickleback: A Model System For Evolutionary Genomics
Reid, K., Bell, M. A., & Veeramah, K. R. (2021) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-111720-081402 · Cited by 120
Diversity and Convergence of Sex-Determination Mechanisms in Teleost Fish
Kitano, J., Ansai, S., Takehana, Y., & Yamamoto, Y. (2023) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-021122-113935 · Cited by 120
Biga, P. R., & Goetz, F. W. (2006) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00905.2005 · Cited by 115
Meyer, A., Biermann, C. H., & Ortí, G. (1993) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.1993.0070 · Cited by 109
Deep three-photon imaging of the brain in intact adult zebrafish
Chow, D. M., Sinefeld, D., Kolkman, K. E., Ouzounov, D. G., Akbari, N., Tatarsky, R., Bass, A., Xu, C., & Fetcho, J. R. (2020) · Nature Methods · doi:10.1038/s41592-020-0819-7 · Cited by 107
Patterson, L. B., Bain, E. J., & Parichy, D. M. (2014) · Nature Communications · doi:10.1038/ncomms6299 · Cited by 102
Anatomic position determines oncogenic specificity in melanoma
Weiss, J. M., Hunter, M. V., Cruz, N. M., Baggiolini, A., Tagore, M. M., Ma, Y., Misale, S., Marasco, M., Simon-Vermot, T., Campbell, N. R., et al. (2022) · Nature · doi:10.1038/s41586-022-04584-6 · Cited by 102
Quigley, I. K., Turner, J. M., Nuckels, R. J., Manuel, J. L., Budi, E. H., MacDonald, E. L., & Parichy, D. M. (2004) · Development · doi:10.1242/dev.01526 · Cited by 101
Sensitivity of cones from a cyprinid fish (Danio aequipinnatus) to ultraviolet and visible light
Palacios, A. G., Goldsmith, T. H., & Bernard, G. D. (1996) · Visual Neuroscience · doi:10.1017/s0952523800008099 · Cited by 99
Transparent Danionella translucida as a genetically tractable vertebrate brain model
Schulze, L., Henninger, J., Kadobianskyi, M., Chaigne, T., Faustino, A. I., Hakiy, N., Albadri, S., Schuelke, M., Maler, L., Del Bene, F., et al. (2018) · Nature Methods · doi:10.1038/s41592-018-0144-6 · Cited by 98
Poss, K. D., & Tanaka, E. M. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.07.007 · Cited by 97
Spectacular morphological novelty in a miniature cyprinid fish, Danionella dracula n. sp.
Britz, R., Conway, K. W., & Rüber, L. (2009) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2009.0141 · Cited by 97
Zebrafish hybrids suggest genetic mechanisms for pigment pattern diversification in Danio
Parichy, D. M., & Johnson, S. L. (2001) · Development Genes and Evolution · doi:10.1007/s004270100155 · Cited by 92
Quigley, I. K., Manuel, J. L., Roberts, R. A., Nuckels, R. J., Herrington, E. R., MacDonald, E. L., & Parichy, D. M. (2005) · Development · doi:10.1242/dev.01547 · Cited by 91
Phylogeny of Zebrafish, a “Model Species,” within Danio, a “Model Genus”
McCluskey, B. M., & Postlethwait, J. H. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msu325 · Cited by 90
The Developmental Genetics of Vertebrate Color Pattern Formation
Irion, U., Singh, A. P., & Nüsslein-Volhard, C. (2016) · Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2015.12.012 · Cited by 88
Self-citationNguyen, P. D., Gurevich, D., Sonntag, C., Hersey, L., Alaei, S., Nim, H. T., Siegel, A., Hall, T. E., Rossello, F. J., Boyd, S. E., et al. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.06.003 · Cited by 87
Self-citationGenome structures resolve the early diversification of teleost fishes
Parey, E., Louis, A., Montfort, J., Bouchez, O., Roques, C., Iampietro, C., Lluch, J., Castinel, A., Donnadieu, C., Desvignes, T., et al. (2023) · Science · doi:10.1126/science.abq4257 · Cited by 87
Sex-specific perceptual spaces for a vertebrate basal social aggregative behavior
Engeszer, R. E., Wang, G., Ryan, M. J., & Parichy, D. M. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0708778105 · Cited by 84
Developmental genetics with model organisms
Irion, U., & Nüsslein‐Volhard, C. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2122148119 · Cited by 82
Self-citationThe bowfin genome illuminates the developmental evolution of ray-finned fishes
Thompson, A. W., Hawkins, M. B., Parey, E., Wcisel, D. J., Ota, T., Kawasaki, K., Funk, E. C., Losilla, M., Fitch, O. E., Pan, Q., et al. (2021) · Nature Genetics · doi:10.1038/s41588-021-00914-y · Cited by 81
Integrating non-mammalian model organisms in the diagnosis of rare genetic diseases in humans
Yamamoto, S., Kanca, O., Wangler, M. F., & Bellen, H. J. (2023) · Nature Reviews Genetics · doi:10.1038/s41576-023-00633-6 · Cited by 81
Trans-species polymorphism of class II Mhc loci in danio fishes
Graser, R. T., Ó’hUigín, C., Vincek, V., Meyer, A., & Klein, J. (1996) · Immunogenetics · doi:10.1007/bf02602655 · Cited by 78
Pasquier, J., Braasch, I., Batzel, P., Cabau, C., Montfort, J., Nguyen, T., Jouanno, E., Berthelot, C., Klopp, C., Journot, L., et al. (2017) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.22770 · Cited by 78
The identification of genes involved in the evolution of color patterns in fish
Irion, U., & Nüsslein‐Volhard, C. (2019) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2019.07.002 · Cited by 76
Self-citationEnergy conservation by collective movement in schooling fish
Zhang, Y., & LAUDER, G. V. (2023) · eLife · doi:10.7554/elife.90352 · Cited by 73
The untapped potential of medaka and its wild relatives
Hilgers, L., & Schwarzer, J. (2019) · eLife · doi:10.7554/elife.46994 · Cited by 72
A mechanism for red coloration in vertebrates
Toomey, M. B., Marques, C. I., Araújo, P. M., Huang, D., Zhong, S., Liu, Y., Schreiner, G. D., Myers, C. A., Pereira, P., Afonso, S., et al. (2022) · Current Biology · doi:10.1016/j.cub.2022.08.013 · Cited by 70
Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores
Lewis, V. M., Saunders, L. M., Larson, T. A., Bain, E. J., Sturiale, S. L., Gur, D., Chowdhury, S., Flynn, J. D., Allen, M. C., Deheyn, D. D., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1901021116 · Cited by 69
Evolution of pigment cells and patterns: recent insights from teleost fishes
Parichy, D. M. (2021) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2021.02.006 · Cited by 67
Hansen, C. L., & Pelegri, F. J. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.730332 · Cited by 66
Stern, D. L. (2014) · Trends in Genetics · doi:10.1016/j.tig.2014.09.006 · Cited by 65
Spence, R., & Smith, C. (2007) · Ethology · doi:10.1111/j.1439-0310.2006.01295.x · Cited by 63
The Laboratory Domestication of Zebrafish: From Diverse Populations to Inbred Substrains
Suurväli, J., Whiteley, A. R., Zheng, Y., Gharbi, K., Leptin, M., & Wiehe, T. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz289 · Cited by 62
Camp, J. G., Jazwa, A. L., Trent, C. M., & Rawls, J. F. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002585 · Cited by 60
In vitro indeterminate teleost myogenesis appears to be dependent on Pax3
Froehlich, J. M., Galt, N. J., Charging, M. J., Meyer, B. M., & Biga, P. R. (2013) · In Vitro Cellular & Developmental Biology - Animal · doi:10.1007/s11626-013-9616-2 · Cited by 60
The effects of lateral line ablation and regeneration in schooling giant danios
Mekdara, P. J., Schwalbe, M. A. B., Coughlin, L. L., & Tytell, E. D. (2018) · Journal of Experimental Biology · doi:10.1242/jeb.175166 · Cited by 60
Biga, P. R., & Meyer, J. (2009) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2009.07.023 · Cited by 58
The Giant Danio (D. Aequipinnatus) as A Model of Cardiac Remodeling and Regeneration
Lafontant, P. J., Burns, A. R., Grivas, J., Lesch, M. A., Lala, T. D., Reuter, S. P., Field, L. J., & Frounfelter, T. (2011) · The Anatomical Record · doi:10.1002/ar.21492 · Cited by 58
Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes
Spiewak, J. E., Bain, E. J., Liu, J., Kou, K., Sturiale, S. L., Patterson, L. B., Diba, P., Eisen, J. S., Braasch, I., Ganz, J., et al. (2018) · PLOS Genetics · doi:10.1371/journal.pgen.1007538 · Cited by 58
The evolution of developmental biology through conceptual and technological revolutions
Liberali, P., & Schier, A. F. (2024) · Cell · doi:10.1016/j.cell.2024.05.053 · Cited by 58
Mechanical confinement governs phenotypic plasticity in melanoma
Hunter, M. V., Joshi, E., Bowker, S., Montal, E. D., Ma, Y., Kim, Y. H., Yang, Z., Tuffery, L., Li, Z., Rosiek, E., et al. (2025) · Nature · doi:10.1038/s41586-025-09445-6 · Cited by 58
Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio)
Drew, R. E., Settles, M. L., Churchill, E., Williams-Burris, S. M., Balli, S., & Robison, B. D. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-323 · Cited by 56
Modern mosaic analysis in the zebrafish
Carmany-Rampey, A., & Moens, C. B. (2006) · Methods · doi:10.1016/j.ymeth.2006.02.002 · Cited by 56
Britz, R., Conway, K. W., & Rüber, L. (2021) · Scientific Reports · doi:10.1038/s41598-021-97600-0 · Cited by 53
Evolutionary divergence of locomotion in two related vertebrate species
Rajan, G., Lafaye, J., Faini, G., Tano, M. C., Duroure, K., Tanese, D., Panier, T., Candelier, R., Henninger, J., Britz, R., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110585 · Cited by 53
Meyer, B. M., Froehlich, J. M., Galt, N. J., & Biga, P. R. (2012) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2012.10.004 · Cited by 52
Development and genetics of red coloration in the zebrafish relative Danio albolineatus
Huang, D., Lewis, V. M., Foster, T. N., Toomey, M. B., Corbo, J. C., & Parichy, D. M. (2021) · eLife · doi:10.7554/elife.70253 · Cited by 52
Chicoli, A., Butail, S., Lun, Y., Bak-Coleman, J. B., Coombs, S., & Paley, D. A. (2014) · Journal of Fish Biology · doi:10.1111/jfb.12365 · Cited by 49
Blazed oblique plane microscopy reveals scale-invariant inference of brain-wide population activity
Hoffmann, M., Henninger, J., Veith, J., Richter, L., & Judkewitz, B. (2023) · Nature Communications · doi:10.1038/s41467-023-43741-x · Cited by 48
Collective movement of schooling fish reduces the costs of locomotion in turbulent conditions
Zhang, Y., Ko, H., Calicchia, M. A., Ni, R., & LAUDER, G. V. (2024) · PLoS Biology · doi:10.1371/journal.pbio.3002501 · Cited by 48
Mills, M. G., Nuckels, R. J., & Parichy, D. M. (2007) · Development · doi:10.1242/dev.02799 · Cited by 47
Lorin, T., Brunet, F., Laudet, V., & Volff, J. (2018) · G3 Genes Genomes Genetics · doi:10.1534/g3.118.200201 · Cited by 47
Understanding vertebrate immunity through comparative immunology
Boehm, T. L. J. (2024) · Nature reviews. Immunology · doi:10.1038/s41577-024-01083-9 · Cited by 42
Penalva-Tena, A., Bedke, J., Gaudin, A., Barrios, J. P., Bertram, E. P., & Douglass, A. D. (2024) · Current Biology · doi:10.1016/j.cub.2024.11.037 · Cited by 42
Development of neural circuits for social motion perception in schooling fish
Zada, D., Schulze, L., Yu, J., Tarabishi, P., Napoli, J. L., Milan, J., & Lovett-Barron, M. (2024) · Current Biology · doi:10.1016/j.cub.2024.06.049 · Cited by 41
A phylogenetic approach to comparative genomics
Dewar, A. E., Belcher, L. J., & West, S. A. (2025) · Nature Reviews Genetics · doi:10.1038/s41576-024-00803-0 · Cited by 41
Retinal Bipolar Cell Input Mechanisms in Giant Danio. I. Electroretinographic Analysis
Wong, K. Y., Adolph, A. R., & Dowling, J. E. (2004) · Journal of Neurophysiology · doi:10.1152/jn.00259.2004 · Cited by 40
Zebrafish Avatar-test forecasts clinical response to chemotherapy in patients with colorectal cancer
Costa, B. F., Estrada, M. F., Gomes, A. P., Fernandez, L. M., Azevedo, J., Póvoa, V., Fontes, M., Alves, A., Galzerano, A., Castillo-Martín, M., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-49051-0 · Cited by 40
Transcriptional adaptation upregulates utrophin in Duchenne muscular dystrophy
Falcucci, L., Dooley, C. M., Adamóski, D., Juan, T., Martinez, J., Georgieva, A. M., Mamchaoui, K., Cirzi, C., & Stainier, D. Y. R. (2025) · Nature · doi:10.1038/s41586-024-08539-x · Cited by 40
Analysis of the genetic loci of pigment pattern evolution in vertebrates
Elkin, J., Martin, A., Courtier‐Orgogozo, V., & Santos, M. E. (2023) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/brv.12952 · Cited by 37
Hybrid genome assembly and annotation of Danionella translucida
Kadobianskyi, M., Schulze, L., Schuelke, M., & Judkewitz, B. (2019) · Scientific Data · doi:10.1038/s41597-019-0161-z · Cited by 36
Du, K., Ricci, J. M. B., Lu, Y., García-Olazábal, M., Walter, R. B., Warren, W. C., Dodge, T. O., Schumer, M. E., Park, H., Meyer, A., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-50852-6 · Cited by 35
Self-citationTemporal control over the initiation of cell motility by a regulator of G-protein signaling
Hartwig, J., Tarbashevich, K., Seggewiß, J., Stehling, M., Bandemer, J., Grimaldi, C., Paksa, A., Groß-Thebing, T., Meyen, D., & Raz, E. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1400043111 · Cited by 34
Homology and the evolution of novelty duringDanioadult pigment pattern development
Parichy, D. M. (2006) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.21141 · Cited by 33
Froehlich, J. M., Fowler, Z. G., Galt, N. J., Smith, D. L., & Biga, P. R. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00159 · Cited by 33
Induced formation of primordial germ cells from zebrafish blastomeres by germplasm factors
Wang, X.-S., Zhu, J.-W., Wang, H.-P., Deng, W.-Q., Jiao, S.-B., Wang, Y.-Q., He, M.-D., Zhang, F.-H., Liu, T., Hao, Y.-L., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43587-3 · Cited by 33
McMahon, D. G., & Mattson, M. P. (1996) · Brain Research · doi:10.1016/0006-8993(96)00043-1 · Cited by 31
Whole-brain optical access in a small adult vertebrate with two- and three-photon microscopy
Akbari, N., Tatarsky, R. L., Kolkman, K. E., Fetcho, J. R., Bass, A. H., & Xu, C. (2022) · iScience · doi:10.1016/j.isci.2022.105191 · Cited by 31
The mechanism for directional hearing in fish
Veith, J., Chaigne, T., Svanidze, A., Dressler, L. E., Hoffmann, M., Gerhardt, B., & Judkewitz, B. (2024) · Nature · doi:10.1038/s41586-024-07507-9 · Cited by 31
Generating parabiotic zebrafish embryos for cell migration and homing studies
Demy, D. L., Ranta, Z., Giorgi, J.-M., Gonzalez, M., Herbomel, P., & Kissa, K. (2013) · Nature Methods · doi:10.1038/nmeth.2362 · Cited by 30
Visually guided and context-dependent spatial navigation in the translucent fish Danionella cerebrum
Lee, T. J., & Briggman, K. L. (2023) · Current Biology · doi:10.1016/j.cub.2023.11.030 · Cited by 29
Diversity of Lipid Distribution in Fish Skeletal Muscle
Kaneko, G., Shirakami, H., Hirano, Y., Oba, M., Yoshinaga, H., Khieokhajonkhet, A., Nagasaka, R., Kondo, H., Hırono, I., & Ushio, H. (2016) · ZOOLOGICAL SCIENCE · doi:10.2108/zs150096 · Cited by 28
Pangenomic context reveals the extent of intraspecific plant NLR evolution
Teasdale, L. C., Murray, K., Collenberg, M., Contreras‐Garrido, A., Schlegel, T., van Ess, L., Jüttner, J., Lanz, C., Deusch, O., Fitz, J., et al. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.07.011 · Cited by 28
Hu, Y., Mauri, A., Donahue, J., Singh, R. P., Acosta, B., & McMenamin, S. K. (2019) · Developmental Dynamics · doi:10.1002/dvdy.76 · Cited by 27
Longitudinal in vivo imaging of adult Danionella cerebrum using standard confocal microscopy
Lam, P. (2022) · Disease Models & Mechanisms · doi:10.1242/dmm.049753 · Cited by 27
Patient-derived zebrafish xenografts of uveal melanoma reveal ferroptosis as a drug target
Groenewoud, A., Yin, J., Gelmi, M. C., Alsafadi, S., Némati, F., Decaudin, D., Roman‐Roman, S., Kalirai, H., Coupland, S. E., Jochemsen, A. G., et al. (2023) · Cell Death Discovery · doi:10.1038/s41420-023-01446-6 · Cited by 27
pIGLET : Safe harbor landing sites for reproducible and efficient transgenesis in zebrafish
Lalonde, R. L., Wells, H. H., Kemmler, C. L., Nieuwenhuize, S., Lerma, R., Burger, A., & Mosimann, C. (2024) · Science Advances · doi:10.1126/sciadv.adn6603 · Cited by 27
Podobnik, M., Frohnhöfer, H. G., Dooley, C. M., Eskova, A., Nüsslein-Volhard, C., & Irion, U. (2020) · Nature Communications · doi:10.1038/s41467-020-20021-6 · Cited by 26
Self-citationDecoding an Organ Regeneration Switch by Dissecting Cardiac Regeneration Enhancers
Begeman, I. J., Shin, K., Osorio-Méndez, D., Kurth, A., Lee, N., Chamberlain, T. J., Pelegri, F. J., & Kang, J. (2020) · Development · doi:10.1242/dev.194019 · Cited by 26
Conway, K. W., M. Kubicek, K., & Britz, R. (2021) · Developmental Dynamics · doi:10.1002/dvdy.280 · Cited by 25
Long-read sequencing of the zebrafish genome reorganizes genomic architecture
Chernyavskaya, Y., Zhang, X., Liu, J., & Blackburn, J. S. (2022) · BMC Genomics · doi:10.1186/s12864-022-08349-3 · Cited by 24
Nagy, B., & WATTERS, B. R. (2021) · Aquatic Conservation Marine and Freshwater Ecosystems · doi:10.1002/aqc.3741 · Cited by 22
Validity of Xiphophorus fish as models for human disease
Schartl, M., & Lü, Y. (2024) · Disease Models & Mechanisms · doi:10.1242/dmm.050382 · Cited by 22
Lifelong behavioral screen reveals an architecture of vertebrate aging
Bedbrook, C. N., Nath, R. D., Zhang, L., Linderman, S. W., Brunet, A., & Deisseroth, K. A. (2026) · Science · doi:10.1126/science.aea9795 · Cited by 22
Acoustic and postural displays in a miniature and transparent teleost fish, Danionella dracula
Tatarsky, R. L., Guo, Z., Campbell, S. C., Kim, H., Fang, W., Perelmuter, J. T., Schuppe, E. R., Conway, K. W., Reeve, H. K., & Bass, A. H. (2022) · Journal of Experimental Biology · doi:10.1242/jeb.244585 · Cited by 21
From darkness to discovery: evolutionary, adaptive, and translational genetic insights from cavefish
Swaminathan, A., Xia, F., & Rohner, N. (2023) · Trends in Genetics · doi:10.1016/j.tig.2023.10.002 · Cited by 21
Kullander, S., Rahman, M. M., Norén, M., & Mollah, A. R. (2017) · PLoS ONE · doi:10.1371/journal.pone.0186895 · Cited by 20
Ultrafast sound production mechanism in one of the smallest vertebrates
Cook, V. A., Groneberg, A. H., Hoffmann, M., Kadobianskyi, M., Veith, J., Schulze, L., Henninger, J., Britz, R., & Judkewitz, B. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2314017121 · Cited by 20
Courtier‐Orgogozo, V., & Martin, A. (2020) · Journal of Experimental Biology · doi:10.1242/jeb.208934 · Cited by 19
McCluskey, B. M., Uji, S., Mancusi, J. L., Postlethwait, J. H., & Parichy, D. M. (2021) · PLOS Genetics · doi:10.1371/journal.pgen.1009364 · Cited by 19
Lindemann, N., Kalix, L., Possiel, J., Stasch, R., Kusian, T., Köster, R. W., & von Trotha, J. W. (2022) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2022.885775 · Cited by 19
Beyond planar: fish schools adopt ladder formations in 3D
Ko, H., Girma, A., Zhang, Y., Pan, Y., LAUDER, G. V., & Nagpal, R. (2025) · Scientific Reports · doi:10.1038/s41598-025-06150-2 · Cited by 19
Morabito, G., Dönertaş, H. M., Sperti, L., Seidel, J., Zonouzi, A. P., Poeschla, M., & Valenzano, D. R. (2026) · Nature Aging · doi:10.1038/s43587-026-01086-2 · Cited by 19
Fouke, K. E., He, Z., Loring, M. D., & Naumann, E. A. (2024) · Current Biology · doi:10.1016/j.cub.2025.04.027 · Cited by 18
Sensory deafferentation and olfactory bulb morphology in the zebrafish and related species
Poling, K. R., & Brunjes, P. C. (2000) · Brain Research · doi:10.1016/s0006-8993(99)02412-9 · Cited by 17
A maternal-to-zygotic-transition gene block on the zebrafish sex chromosome
WILSON, C. A., & Postlethwait, J. H. (2024) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkae050 · Cited by 17
The role of vision and lateral line sensing for schooling in giant danios ( Devario aequipinnatus )
Tidswell, B. K., Veliko-Shapko, A., & Tytell, E. D. (2024) · Journal of Experimental Biology · doi:10.1242/jeb.246887 · Cited by 17
Quah, F. X., Almeida, M. V., Blumer, M., Yuan, C. U., Fischer, B., See, K., Jackson, B., Zatha, R., Rusuwa, B., Turner, G. F., et al. (2025) · Genome Research · doi:10.1101/gr.279674.124 · Cited by 17
Direct male development in chromosomally ZZ zebrafish
WILSON, C. A., Batzel, P., & Postlethwait, J. H. (2024) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2024.1362228 · Cited by 16
Development of sound production in Danionella cerebrum
Groneberg, A. H., Dressler, L. E., Kadobianskyi, M., Müller, J., & Judkewitz, B. (2024) · Journal of Experimental Biology · doi:10.1242/jeb.247782 · Cited by 16
The molecular evolutionary basis of species formation revisited
Frayer, M. E., Robles, N. V., Rodríguez-Barrera, M. J., Coughlan, J. M., & Schumer, M. E. (2025) · Trends in Genetics · doi:10.1016/j.tig.2025.07.003 · Cited by 16
Lekkos, K., Hu, Z., Nguyen, P. D., Honkoop, H., Sengul, E., Alonaizan, R., Koth, J., Ying, J., Lemieux, M. E., Kenward, A., et al. (2025) · Nature Cardiovascular Research · doi:10.1038/s44161-025-00718-x · Cited by 16
Huang, D., Kapadia, E. H., Liang, Y., Shriver, L. P., Dai, S., Patti, G. J., Humbel, B. M., Laudet, V., & Parichy, D. M. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2424180122 · Cited by 15
Danio aesculapii, a new species of danio from south-western Myanmar (Teleostei: Cyprinidae)
Kullander, S., & Fang, F. (2009) · Zootaxa · doi:10.11646/zootaxa.2164.1.4 · Cited by 15
Nayak, R., Franěk, R., Radek Sindelka, E., & Pšenička, M. (2023) · Communications Biology · doi:10.1038/s42003-023-04800-7 · Cited by 15
Precise mutagenesis in zebrafish using cytosine base editors
Rosello, M., Serafini, M., Concordet, J., & Bene, F. D. (2023) · Nature Protocols · doi:10.1038/s41596-023-00854-3 · Cited by 15
The African Turquoise Killifish: A Scalable Vertebrate Model for Aging and Other Complex PhenotypesPreprint
Boos, F., Chen, J., & Brunet, A. (2023) · Cold Spring Harbor Protocols · doi:10.1101/pdb.over107737 · Cited by 13
Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects
McCluskey, B. M., Liang, Y., Lewis, V. M., Patterson, L. B., & Parichy, D. M. (2021) · Biology Open · doi:10.1242/bio.058814 · Cited by 12
Bass, A. H., & Perelmuter, J. T. (2024) · Nature Methods · doi:10.1038/s41592-024-02433-0 · Cited by 12
Telencephalic eversion in embryos and early larvae of four teleost species
Folgueira, M., & Clarke, J. D. W. (2024) · Evolution & Development · doi:10.1111/ede.12474 · Cited by 11
Signal control during tissue regeneration in adult animals
Bangru, S., Diegmiller, R., Talia, S. D., & Poss, K. D. (2025) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-025-00917-1 · Cited by 11
Imaging cellular activity across all organs reveals body-wide circuits
Ruetten, V. M. S., Zheng, W., Siwanowicz, I., Mensh, B. D., Eddison, M., Hu, A., Chi, Y., Lemire, A. L., Guo, C., Kadobianskyi, M., et al. (2026) · Nature · doi:10.1038/s41586-026-10979-6 · Cited by 11
Endoh, M., Shima, F., Havelka, M., Asanuma, R., Yamaha, E., Fujimoto, T., & Arai, K. (2020) · PLoS ONE · doi:10.1371/journal.pone.0233885 · Cited by 10
Complete de novo assembly and re-annotation of the zebrafish genomePreprint
Okendo, J., Koren, S., Rhie, A., Torrado-Tapias, A., Pickett, B. D., Brooks, S. Y., Bouffard, G. G., Crawford, J., Sison, C., Joardar, V., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.17.688901 · Cited by 10
Copy number variation and population-specific immune genes in the model vertebrate zebrafish
Schäfer, Y., Palitzsch, K., Leptin, M., Whiteley, A. R., Wiehe, T., & Suurväli, J. (2024) · eLife · doi:10.7554/elife.98058 · Cited by 9
Numerical discrimination in Danionella
Zanon, M., Fraser, S. E., & Vallortígara, G. (2025) · iScience · doi:10.1016/j.isci.2025.113667 · Cited by 9
Sudasinghe, H., Britz, R., Matschiner, M., Conway, K., Tan, H. H., Kottelat, M., Raghavan, R., Dahanukar, N., Anoop, V. K., Bohlen, J., et al. (2026) · doi:10.64898/2026.01.14.699467 · Cited by 9
Danionella translucida, a tankful of new opportunities
Rajan, G., Duroure, K., & Bene, F. D. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-821099-4.00017-1 · Cited by 8
Akbari, N., Tatarsky, R. L., Kolkman, K. E., Fetcho, J. R., Xu, C., & Bass, A. H. (2024) · The Journal of Comparative Neurology · doi:10.1002/cne.25614 · Cited by 8
Convergent thyroid-ATPase interactions regulate collective behavior in Danionella
Zada, D., Kadobianskyi, M., Judkewitz, B., & Lovett-Barron, M. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116730 · Cited by 8
Sudasinghe, H., Britz, R., Matschiner, M., Conway, K. W., Tan, H. H., Kottelat, M., Raghavan, R., Dahanukar, N., Anoop, V. K., Bohlen, J., et al. (2026) · Molecular Biology and Evolution · doi:10.1093/molbev/msag261 · Cited by 8
Nelson, H. M., Coffing, G. C., Chilson, S., Hester, K., Carrillo, C., Ostreicher, S., Tomamichel, W., Hanlon, S., Burns, A. R., & Lafontant, P. J. (2019) · Developmental Dynamics · doi:10.1002/dvdy.88 · Cited by 7
Efficient genome editing using modified Cas9 proteins in zebrafish
Dorner, L., Stratmann, B., Bader, L., Podobnik, M., & Irion, U. (2024) · Biology Open · doi:10.1242/bio.060401 · Cited by 7
Self-citationBolnick, D. I., Fuess, L. E., Graham, A. L., Khan, I., Steinel, N. C., & Vaziri, G. J. (2025) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev-ecolsys-102723-043048 · Cited by 7
Neuronal detection of social actions directs collective escape behaviorPreprint
Yu, J., Milan, J., Meyerhof, G. T., Napoli, J. L., & Lovett-Barron, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.24.678087 · Cited by 7
Shifatu, O., Glasshagel, S., Nelson, H. M., Patel, P. V., Tomamichel, W., Higginbotham, C., Evans, P. K., Lafontant, G. S., Burns, A. R., & Lafontant, P. J. (2018) · Journal of Developmental Biology · doi:10.3390/jdb6030019 · Cited by 6
Zebrafish: Lessons and Insights into Skeletal Muscle ResearchPreprint
Lu, Y., Ruparelia, A. A., & Currie, P. D. (2025) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a041515 · Cited by 6
Self-citationWhole-body single-cell atlas of an adult vertebrate, Danionella cerebrum
Atabay, K. D., Aoude, P., Park, C., Kadobianskyi, M., Paugois, O. H., Judkewitz, B., & Reddien, P. W. (2026) · Science · doi:10.64898/2026.02.03.703562 · Cited by 6
Gene conversion empowers natural selection in a clonal fish species
Rice, E. S., Schaefer, N. K., Du, K., da Cruz, I., Kneitz, S., Acemel, R. D., Lupiáñez, D. G., Carroll, R. A., Drinkwater, R., Schartl, M., et al. (2026) · Nature · doi:10.1038/s41586-026-10180-9 · Cited by 6
Bao, L., & Xia, J. (2017) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2017.05.011 · Cited by 5
Podobnik, M., Singh, A. P., Fu, Z., Dooley, C. M., Frohnhöfer, H. G., Firlej, M., Stednitz, S. J., Elhabashy, H., Weyand, S., Weir, J. R., et al. (2023) · Development · doi:10.1242/dev.201627 · Cited by 5
Self-citationThe hybrid history of zebrafish
McCluskey, B. M., Batzel, P., & Postlethwait, J. H. (2025) · G3: Genes, Genomes, Genetics · doi:10.1093/g3journal/jkae299 · Cited by 5
A new hypothesis to explain disease dominance
Juvik, B., Falcucci, L., Lundegaard, P. R., & Stainier, D. Y. R. (2025) · Trends in Genetics · doi:10.1016/j.tig.2024.11.009 · Cited by 5
ZFIN updates to support zebrafish environmental exposure data
Bradford, Y. M., Slyke, C. E. V., Muyskens, J. B., Tseng, W.-C., Howe, D. G., Fashena, D. S., Martin, R., Paddock, H., Pich, C., Ramachandran, S., et al. (2025) · Genetics · doi:10.1093/genetics/iyaf021 · Cited by 5
Genetic context of transgene insertion can influence neurodevelopment in zebrafish
Moyer, A. J., Chrabasz, J. A., Barcus, A. K., Cheng, J., Capps, M. E., Lalonde, R. L., Mosimann, C., & Thyme, S. B. (2025) · Genetics · doi:10.1093/genetics/iyaf195 · Cited by 5
Cell-cell communication as underlying principle governing color pattern formation in teleost fishes
Klann, M., Miura, S., Lee, S., Vianello, S., Ross, R. J. H., Watanabe, M., Gairin, E., Liang, Y., Hutto, H. W., McCluskey, B. M., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-69524-8 · Cited by 5
Medaka: a novel model for analyzing genome–environment interactions
Naruse, K., Loosli, F., Ansai, S., Birney, E., & Wittbrodt, J. (2026) · Trends in Genetics · doi:10.1016/j.tig.2025.12.005 · Cited by 5
Distributed hierarchical filters partition the Danionella vocal repertoirePreprint
Henninger, J., Hoffmann, M., Kadobianskyi, M., Veith, J., Berlage, C., Groneberg, A. H., Markov, D. A., Schulze, L., Svanidze, A., Maler, L., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.04.709502 · Cited by 5
Genomic and genetic insights into speciation and pigment pattern diversification in Danio fishes
Lu, J., Podobnik, M., Huang, J., McCluskey, B. M., McCarthy, S. A., Wood, J., Collins, J., Torrance, J., Sims, Y., Gao, D., et al. (2025) · doi:10.1101/2025.10.17.682988 · Cited by 4
Self-citationLeveraging the zebrafish to model organ transplantation
Cavalcante, L. D. S., Toner, M., Uygun, K., & Tessier, S. N. (2019) · Current Opinion in Organ Transplantation · doi:10.1097/mot.0000000000000696 · Cited by 4
Tatarsky, R. L., Akbari, N., Wang, K., Xu, C., & Bass, A. H. (2025) · The Journal of Comparative Neurology · doi:10.1002/cne.70048 · Cited by 4
The genome sequence of the zebra danio, Danio rerio (Hamilton, 1822) (Cypriniformes: Danionidae)
Howe, K., Howard, C., McCarthy, S., & Wood, J. M. D. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.24569.1 · Cited by 4
Logarithmic coding leads to adaptive stabilization in the presence of sensorimotor delays
Demarchi, L., Coraggioso, M., Hubert, A., Panier, T., Morvan-Dubois, G., Bormuth, V., & Debrégeas, G. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2510385122 · Cited by 4
Jagot, S., Babarit, C., Sabin, N., Grand, F. L., Rouger, K., & Gabillard, J. (2026) · BMC Genomics · doi:10.64898/2026.01.28.702282 · Cited by 4
Multimodal reference brain atlas of adult Danionella cerebrumPreprint
Kadobianskyi, M., Henninger, J., Markov, D. A., Groneberg, A. H., Veith, J., Renz, M., Atabay, K. D., Reddien, P. W., Maler, L., & Judkewitz, B. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.09.710483 · Cited by 4
Huang, D., Liu, T., Carr, A. A., de Mello, P. L. H., Liang, Y., Shriver, L. P., Chauvigné, F., Johnson, S. L., Cerdà, J., Patti, G. J., et al. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2537571123 · Cited by 4
Huang, D., de Mello, P. L. H., Liu, T., Liu, Y., Kapadia, E. H., Liang, Y., Lü, J., Corbo, J. C., & Parichy, D. M. (2026) · Current Biology · doi:10.1016/j.cub.2026.03.007 · Cited by 4
The genome sequence of the Dracula fish, Danionella dracula (Britz, Conway & Rüber, 2009)
Rüber, L., Britz, R., Conway, K., Bista, I., McCarthy, S., Wood, J., Smith, M., Oliver, K., Howe, K., & Durbin, R. (2024) · Wellcome Open Research · doi:10.12688/wellcomeopenres.21117.1 · Cited by 3
Conserved germ plasm characteristics across the Danio and Devario lineages
Hansen, C. L., Chamberlain, T. J., Trevena, R. L., Kurek, J. E., & Pelegri, F. J. (2021) · genesis · doi:10.1002/dvg.23452 · Cited by 3
An analysis pipeline to compare explorative locomotion across fish species
Rajan, G., Debrégeas, G., Orger, M. B., & Bene, F. D. (2022) · STAR Protocols · doi:10.1016/j.xpro.2022.101850 · Cited by 3
Social behavior: A tiny fish with prodigious skills
Engert, F. (2025) · Current Biology · doi:10.1016/j.cub.2024.12.009 · Cited by 3
Optimised genome editing for precise DNA insertion and substitution using prime editors in zebrafishPreprint
Ono, Y., Peterka, M., Love, M. I., Khan, A., Bowers, F., Bhandari, A., Gordon, E., Ball, J. S., Hammond, C., Tyler, C. R., et al. (2025) · eLife · doi:10.7554/elife.107475 · Cited by 3
Sudasinghe, H., Matschiner, M., Britz, R., Conway, K. W., Tan, H. H., Salzburger, W., Peichel, C. L., & Rüber, L. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.20.719654 · Cited by 3
Evolutionary genetics of ageing
Dönertaş, H. M., & Partridge, L. (2026) · Nature Reviews Genetics · doi:10.1038/s41576-026-00959-x · Cited by 3
Trevena, R. L., Veire, B. M., Chamberlain, T. J., Moravec, C. E., & Pelegri, F. J. (2024) · Evolution & Development · doi:10.1111/ede.12495 · Cited by 2
TransTag enables simple and efficient transgene mapping in zebrafish via tagmentation
Meng, F. W., Schneider, P., Wei, X., Ariyasiri, K., Halpern, M. E., & Murphy, P. J. (2025) · Cell Reports Methods · doi:10.1016/j.crmeth.2025.101090 · Cited by 2
The chromosome-level genome sequences of Danio rerio strains AB, Nadia and Cooch Behar
Howe, K., Varga, Z. M., Postlethwait, J. H., McCarthy, S., Wood, J. M. D., Smith, M., & Oliver, K. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.25012.1 · Cited by 2
The genome sequence of the Panther Danio, Danio aesculapii Kullander & Fang, 2009
Howe, K., McCluskey, B. M., Varga, Z. M., Trevarrow, B., McCarthy, S., Pelan, S. E., Wood, J. M. D., Smith, M., & Oliver, K. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.25028.1 · Cited by 2
A sensorimotor instability drives a locomotor transition during fish development
Coraggioso, M., Demarchi, L., Wong, R., Dichio, V., Chaumeton, C., Panier, T., Morvan-Dubois, G., Goodhill, G. J., Bormuth, V., & Debrégeas, G. (2026) · Science Advances · doi:10.1126/sciadv.aec6922 · Cited by 2
The genome sequence of the Orange-finned Danio, Danio kyathit Fang, 1998
Howe, K., McCluskey, B. M., McCarthy, S., Collins, J., Wood, J. M. D., Smith, M., & Oliver, K. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.25031.1 · Cited by 2
Research works printed but not linked: 4
- Nelson, J. S. Fishes of the World 4th edn (Wiley, 2006).
- Fang, F. Danio kyathit, a new species of cyprinid fish from Myitkyina, northern Myanmar. Ichthyol. Explor. Freshw. 8, 273–280 (1998).
- Kullander, S. O. & Fang, F. Danio tinwini, a new species of spotted danio from northern Myanmar (Teleostei: Cyprinidae). Ichthyol. Explor. Freshw. 20, 223 (2009).
- Kullander, S. O. Description of Danio flagrans, and redescription of D. choprae, two closely related species from the Ayeyarwaddy River drainage in northern Myanmar (Teleostei: Cyprinidae). Ichthyol. Explor. Freshw. 23, 245 (2012).
Cited by
Sorted by citations
Atlas of adult Danionella fish telencephalon reveals retention of larval charactersPreprint
Perelmuter, J. T., & Bass, A. H. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.09.23.753900
Metadata
- Authors
- Podobnik, M., Lu, Y., Irion, U., & Currie, P. D.
- Affiliations
- Australian Regenerative Medicine Institute (AU)
- Stowers Institute for Medical Research (US)
- Max Planck Institute for Biology (DE)
- Venue
- Nature Reviews Genetics
- Published
- 2026-09-10
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W7212181586
- Semantic Scholar
- 8e46d953615def571442c658324e93cc92b5c4d2
- Cited by
- 1
- References
- 208
- Citations by year
- 2026: 1
- FWCI
- 0.92
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Zebrafish Biomedical Research Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- zebrafish, Danio, comparative genomics, comparative genetics, interspecific hybridization, mutagenesis, transgenesis, genome assembly, evolutionary innovation, phenotypic divergence, phylogeny
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