Human cellular CYBA UTR sequences increase mRNA translation without affecting the half-life of recombinant RNA transcripts
Open accessAbstract
Modified nucleotide chemistries that increase the half-life (T 1/2) of transfected recombinant mRNA and the use of non-native 5′- and 3′-untranslated region (UTR) sequences that enhance protein translation are advancing the prospects of transcript therapy. To this end, a set of UTR sequences that are present in mRNAs with long cellular T 1/2 were synthesized and cloned as five different recombinant sequence set combinations as upstream 5′-UTR and/or downstream 3′-UTR regions flanking a reporter gene. Initial screening in two different cell systems in vitro revealed that cytochrome b-245 alpha chain (CYBA) combinations performed the best among all other UTR combinations and were characterized in detail. The presence or absence of CYBA UTRs had no impact on the mRNA stability of transfected mRNAs, but appeared to enhance the productivity of transfected transcripts based on the measurement of mRNA and protein levels in cells. When CYBA UTRs were fused to human bone morphogenetic protein 2 (hBMP2) coding sequence, the recombinant mRNA transcripts upon transfection produced higher levels of protein as compared to control transcripts. Moreover, transfection of human adipose mesenchymal stem cells with recombinant hBMP2-CYBA UTR transcripts induced bone differentiation demonstrating the osteogenic and therapeutic potential for transcript therapy based on hybrid UTR designs.
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Cites
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
Vogel, C., & Marcotte, E. M. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3185 · Cited by 4,195 · see citing works
Warren, L., Manos, P. D., Ahfeldt, T., Loh, Y.-H., Li, H., Lau, F., Ebina, W., Mandal, P. K., Smith, Z. D., Meissner, A., et al. (2010) · Cell Stem Cell · doi:10.1016/j.stem.2010.08.012 · Cited by 2,662 · see citing works
Osteogenic differentiation of purified, culture-expanded human mesenchymal stem cells in vitro
Jaiswal, N., Haynesworth, S. E., Caplan, A. I., & Bruder, S. P. (1997) · Journal of Cellular Biochemistry · doi:10.1002/(sici)1097-4644(199702)64:2 · Cited by 2,547 · see citing works
The highways and byways of mRNA decay
Garneau, N. L., Wilusz, J., & Wilusz, C. J. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2104 · Cited by 1,294 · see citing works
Molecular mechanisms of translational control
Gebauer, F., & Hentze, M. W. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1488 · Cited by 991 · see citing works
Untranslated regions of mRNAs.
(2002) · Genome biology · doi:10.1186/gb-2002-3-3-reviews0004 · Cited by 987 · see citing works
Magnetofection: enhancing and targeting gene delivery by magnetic force in vitro and in vivo
Scherer, F., Anton, M., Schillinger, U., Henke, J., Bergemann, C., Krüger, A., Gänsbacher, B., & Plank, C. (2002) · Gene Therapy · doi:10.1038/sj.gt.3301624 · Cited by 932 · see citing works
Self-citation't Hoen, P. A. C., Ariyurek, Y., Thygesen, H. H., Vreugdenhil, E., Vossen, R. H. A. M., de Menezes, R. X., Boer, J. M., van Ommen, G.-J. B., & den Dunnen, J. T. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn705 · Cited by 742 · see citing works
Expression of therapeutic proteins after delivery of chemically modified mRNA in mice
Kormann, M. S. D., Hasenpusch, G., Aneja, M. K., Nica, G., Flemmer, A. W., Herber-Jonat, S., Huppmann, M., Mays, L. E., Illenyi, M., Schams, A., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1733 · Cited by 733 · see citing works
Self-citationPrecision and functional specificity in mRNA decay
Wang, Y., Liu, C. L., Storey, J. D., Tibshirani, R. J., Herschlag, D., & Brown, P. O. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.092538799 · Cited by 708 · see citing works
Zangi, L., Lui, K. O., von Gise, A., Ma, Q., Ebina, W., Ptaszek, L. M., Später, D., Xu, H., Tabebordbar, M., Gorbatov, R., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2682 · Cited by 646 · see citing works
Holtkamp, S., Kreiter, S., Selmi, A., Simon, P., Koslowski, M., Huber, C., Türeci, O., & Sahin, U. (2006) · Blood · doi:10.1182/blood-2006-04-015024 · Cited by 625 · see citing works
Git, A., Dvinge, H., Salmon-Divon, M., Osborne, M., Kutter, C., Hadfield, J., Bertone, P., & Caldas, C. (2010) · RNA · doi:10.1261/rna.1947110 · Cited by 607 · see citing works
Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence AttributesPreprint
Yang, E., van Nimwegen, E., Zavolan, M., Rajewsky, N., Schroeder, M., Magnasco, M., & Darnell, J. E., Jr. (2003) · Genome Research · doi:10.1101/gr.1272403 · Cited by 598 · see citing works
Sharova, L. V., Sharov, A. A., Nedorezov, T., Piao, Y., Shaik, N., & Ko, M. S. H. (2009) · DNA Research · doi:10.1093/dnares/dsn030 · Cited by 591 · see citing works
Thess, A., Grund, S., Mui, B. L., Hope, M. J., Baumhof, P., Fotin-Mleczek, M., & Schlake, T. (2015) · Molecular Therapy · doi:10.1038/mt.2015.103 · Cited by 513 · see citing works
The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro.
Bernstein, P., Peltz, S. W., & Ross, J. (1989) · Molecular and Cellular Biology · doi:10.1128/mcb.9.2.659 · Cited by 373 · see citing works
XRN 5′→3′ exoribonucleases: Structure, mechanisms and functions
Nagarajan, V. K., Jones, C. I., Newbury, S. F., & Green, P. J. (2013) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2013.03.005 · Cited by 366 · see citing works
Burattini, S., Ferri, P., Battistelli, M., Curci, R., Luchetti, F., & Falcieri, E. (2004) · PubMed · doi:10.4081/891 · Cited by 353 · see citing works
The transcriptional program of a human B cell line in response to Myc.
Schuhmacher, M., Kohlhuber, F., Hölzel, M., Kaiser, C., Burtscher, H., Jarsch, M., Bornkamm, G., Laux, G., Polack, A., Weidle, U., et al. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.2.397 · Cited by 344 · see citing works
Control of mammalian translation by mRNA structure near caps
Babendure, J. R., Babendure, J. L., Ding, J.-H., & Tsien, R. Y. (2006) · RNA · doi:10.1261/rna.2309906 · Cited by 339 · see citing works
Genome-Wide Analysis of mRNA Decay Rates and Their Determinants in Arabidopsis thaliana
Narsai, R., Howell, K. A., Millar, A. H., O’Toole, N., Small, I., & Whelan, J. (2007) · The Plant Cell · doi:10.1105/tpc.107.055046 · Cited by 328 · see citing works
Brewer, G., & Ross, J. (1988) · Molecular and Cellular Biology · doi:10.1128/mcb.8.4.1697 · Cited by 320 · see citing works
Generation of magnetic nonviral gene transfer agents and magnetofection in vitro
Mykhaylyk, O. M., Sánchez-Antequera, Y., Vlaskou, D., & Plank, C. (2007) · Nature Protocols · doi:10.1038/nprot.2007.352 · Cited by 272 · see citing works
Self-citationCheadle, C., Fan, J., Cho-Chung, Y. S., Werner, T., Ray, J., Do, L., Gorospe, M., & Becker, K. G. (2005) · BMC Genomics · doi:10.1186/1471-2164-6-75 · Cited by 183 · see citing works
Hexokinase II mRNA and gene structure, regulation by insulin, and evolution.
Printz, R. L., Koch, S. R., Potter, L. R., O'Doherty, R. M., Tiesinga, J. J., Moritz, S., & Granner, D. K. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)53521-3 · Cited by 179 · see citing works
Comparison of mRNA gene expression by RT-PCR and DNA microarray
Etienne, W., Meyer, M. H., Peppers, J., & Meyer, R. A. (2004) · BioTechniques · doi:10.2144/04364st02 · Cited by 168 · see citing works
Synergy between tumor immunotherapy and antiangiogenic therapy
Nair, S. K., Boczkowski, D., Moeller, B. J., Dewhirst, M. W., Vieweg, J., & Gilboa, E. (2003) · Blood · doi:10.1182/blood-2002-12-3738 · Cited by 163 · see citing works
Differentiation of Myoblasts in Serum-Free Media: Effects of Modified Media Are Cell Line-Specific
Lawson, M. A., & Purslow, P. P. (2000) · Cells Tissues Organs · doi:10.1159/000016776 · Cited by 156 · see citing works
Chen, J., Férec, C., & Cooper, D. N. (2006) · Human Genetics · doi:10.1007/s00439-006-0180-7 · Cited by 147 · see citing works
Cloning and Expression of cDNA for a Luciferase from the Marine Copepod Metridia longa
Markova, S. V., Gölz, S., Frank, L. A., Kalthof, B., & Vysotski, E. S. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m309639200 · Cited by 147 · see citing works
Yang, Q., Lishanski, A., Yang, W., Hatcher, S., Seet, H., & Gregg, J. P. (2003) · Genome Research · doi:10.1101/gr.997703 · Cited by 136 · see citing works
Enhancing and targeting nucleic acid delivery by magnetic force
Plank, C., Anton, M., Rudolph, C., Rosenecker, J., & Krötz, F. (2003) · Expert Opinion on Biological Therapy · doi:10.1517/14712598.3.5.745 · Cited by 127 · see citing works
Self-citationTumor vaccination using messenger RNA: prospects of a future therapy
Kreiter, S., Diken, M., Selmi, A., Türeci, Ö., & Şahin, U. (2011) · Current Opinion in Immunology · doi:10.1016/j.coi.2011.03.007 · Cited by 120 · see citing works
Single-cell mRNA transfection studies: Delivery, kinetics and statistics by numbers
Leonhardt, C., Schwake, G., Stögbauer, T. R., Rappl, S., Kuhr, J.-T., Ligon, T. S., & Rädler, J. O. (2014) · Nanomedicine: Nanotechnology, Biology and Medicine · doi:10.1016/j.nano.2013.11.008 · Cited by 117 · see citing works
Chemically modified RNA activated matrices enhance bone regeneration
Elangovan, S., Khorsand, B., Do, A., Hong, L., Dewerth, A., Kormann, M., Ross, R. D., Sumner, D. R., Allamargot, C., & Salem, A. K. (2015) · Journal of Controlled Release · doi:10.1016/j.jconrel.2015.09.050 · Cited by 114 · see citing works
Balmayor, E. R., Geiger, J. P., Aneja, M. K., Berezhanskyy, T., Utzinger, M., Mykhaylyk, O. M., Rudolph, C., & Plank, C. (2016) · Biomaterials · doi:10.1016/j.biomaterials.2016.02.018 · Cited by 110 · see citing works
Self-citationmRNA secondary structure optimization using a correlated stem–loop prediction
Gaspar, P., Moura, G., Santos, M. A. S., & Oliveira, J. L. (2013) · Nucleic Acids Research · doi:10.1093/nar/gks1473 · Cited by 89 · see citing works
Vallazza, B., Petri, S., Poleganov, M. A., Eberle, F., Kuhn, A. N., & Şahin, U. (2015) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1288 · Cited by 73 · see citing works
Rauch, C., Brunet, A., Deleule, J., & Farge, E. (2002) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00234.2001 · Cited by 71 · see citing works
RUSSELL, J. P., & Liebhaber, S. (1996) · Blood · doi:10.1182/blood.v87.12.5314.bloodjournal87125314 · Cited by 70 · see citing works
European journal of histochemistry : EJH
di istochimica, S. I. (1992) · Medical Entomology and Zoology · Cited by 67 · see citing works
Posttranscriptional regulation of gene expression in liver regeneration: role of mRNA stability
Kren, B. T., & Steer, C. J. (1996) · The FASEB Journal · doi:10.1096/fasebj.10.5.8621056 · Cited by 65 · see citing works
Mykhaylyk, O. M., Sobisch, T., Almstätter, I., Sánchez-Antequera, Y., Brandt, S., Anton, M., Döblinger, M., Eberbeck, D., Settles, M., Braren, R., et al. (2012) · Pharmaceutical Research · doi:10.1007/s11095-011-0661-9 · Cited by 51 · see citing works
Self-citationStability analysis of chemically modified mRNA using micropattern-based single-cell arrays
Ferizi, M., Leonhardt, C., Meggle, C., Aneja, M. K., Rudolph, C., Plank, C., & Rädler, J. O. (2015) · Lab on a Chip · doi:10.1039/c5lc00749f · Cited by 41 · see citing works
Self-citationDeterminants of intracellular RNA pharmacokinetics: Implications for RNA-based immunotherapeutics
Kuhn, A. N., Diken, M., Kreiter, S., Vallazza, B., Türeci, Ö., & Sahin, U. (2011) · RNA Biology · doi:10.4161/rna.8.1.13767 · Cited by 39 · see citing works
Baudouin-Legros, M., Hinzpeter, A., Jaulmes, A., Brouillard, F., Costes, B., Fanen, P., & Edelman, A. (2005) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00595.2004 · Cited by 39 · see citing works
Hoen, P. A. C. ’., Hirsch, M., de Meijer, E. J., de Menezes, R. X., van Ommen, G. J., & den Dunnen, J. T. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq790 · Cited by 34 · see citing works
High-resolution analysis ofgroαmRNA poly(A) shortening: regulation by interleukin-1β
Stoeckle, M. Y., & Guan, L. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.7.1613 · Cited by 29 · see citing works
Multiplexing Bioluminescent and Fluorescent Reporters to Monitor Live Cells
Haugwitz, M., Nourzaie, O., Garachtchenko, T., Hu, L., Gandlur, S. M., Olsen, C., Farmer, A. A., Chaga, G. S., & Sagawa, H. (2008) · Current Chemical Genomics · doi:10.2174/1875397300801010011 · Cited by 19 · see citing works
Differentiation potential of osteoblast from cultured C2C12 cells on zirconia disk
Saito, M. M., Karakida, T., Yamamoto, R., Nagano, T., Yamakoshi, Y., Hayakawa, T., Oida, S., & Gomi, K. (2014) · Dental Materials Journal · doi:10.4012/dmj.2013-321 · Cited by 13 · see citing works
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Zeng, C., Hou, X., Yan, J., Zhang, C., Li, W., Zhao, W., Du, S., & Dong, Y. (2020) · Advanced Materials · doi:10.1002/adma.202004452 · Cited by 152 · see citing works
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- Authors
- Ferizi, M., Aneja, M. K., Balmayor, E. R., Badieyan, Z. S., Mykhaylyk, O., Rudolph, C., & Plank, C.
- Affiliations
- TUM Klinikum (DE)
- Ethris (Germany) (DE)
- Corresponding author
- Balmayor, Elizabeth R.
- Plank, Christian
- Venue
- Scientific Reports
- Published
- 2016-12-15
- Volume
- 6
- Issue
- 1
- Pages
- 39149-39149
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC5156912
- OpenAlex
- W2562374902
- Semantic Scholar
- d5079010e9878ffd2688df78e422f62798b4a113
- Cited by
- 46
- References
- 51
- Citations by year
- 2026: 5 · 2025: 12 · 2024: 3 · 2023: 5 · 2022: 5 · 2021: 5 · 2020: 2 · 2019: 3 · 2018: 6
- FWCI
- 1.18
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- mediaTUM – the media and publications repository of the Technical University Munich (Technical University Munich) (submittedVersion, other-oa)
- mediaTUM – the media and publications repository of the Technical University Munich (Technical University Munich) (submittedVersion)
- Funders
- Deutsche Forschungsgemeinschaft
- Bundesministerium für Bildung und Forschung (01GM1106E, 0315986)
- Technische Universität München
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- 5' untranslated region, 3' untranslated region, CYBA, mRNA translation, mRNA stability, modified nucleotides, BMP-2, adipose-derived stem cells, osteogenic differentiation, reporter genes
- MeSH terms
- A549 Cells, Adipose Tissue, Animals, Half-Life, Humans, Osteogenesis, Recombinant Proteins, RNA, Messenger, ROC Curve, Transfection, Protein Biosynthesis, Genes, Reporter, NADPH Oxidases, Area Under Curve, 5' Untranslated Regions, 3' Untranslated Regions, RNA Stability, NIH 3T3 Cells, Mice, Bone Morphogenetic Protein 2, Mesenchymal Stem Cells
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