Association of the Intestinal Microbiome with the Development of Neovascular Age-Related Macular Degeneration
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Age-related macular degeneration (AMD) is the most frequent cause of blindness in the elderly. There is evidence that nutrition, inflammation and genetic risk factors play an important role in the development of AMD. Recent studies suggest that the composition of the intestinal microbiome is associated with metabolic diseases through modulation of inflammation and host metabolism. To investigate whether compositional and functional alterations of the intestinal microbiome are associated with AMD, we sequenced the gut metagenomes of patients with AMD and controls. The genera Anaerotruncus and Oscillibacter as well as Ruminococcus torques and Eubacterium ventriosum were relatively enriched in patients with AMD, whereas Bacteroides eggerthii was enriched in controls. Patient’s intestinal microbiomes were enriched in genes of the L-alanine fermentation, glutamate degradation and arginine biosynthesis pathways and decreased in genes of the fatty acid elongation pathway. These findings suggest that modifications in the intestinal microbiome are associated with AMD, inferring that this common sight threatening disease may be targeted by microbiome-altering interventions.
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Association studies have linked intestinal microbial products with the development and progression of age-related choroidal neovascularization (CNV) and age-related macular degeneration (AMD).
“Association studies have linked intestinal microbial products with the development and progression of age-related choroidal neovascularization (CNV) and age-related macular degeneration (AMD) [4, 131, 133].”
From Fecal microbiota transfer between young and aged mice reverses hallmarks of the aging gut, eye, and brain (2022) · cites this paper as [131]
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R: A Language and Environment for Statistical Computing
R Core Team (2000) · doi:10.32614/r.manuals · Cited by 355,706 · see citing works
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548 · see citing works
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400 · see citing works
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192 · see citing works
Fast and sensitive protein alignment using DIAMOND
Buchfink, B., Xie, C., & Huson, D. H. (2015) · Nature Methods · doi:10.1038/nmeth.3176 · Cited by 14,201 · see citing works
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works
Enterotypes of the human gut microbiome
MetaHIT Consortium (additional members), Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., et al. (2011) · Nature · doi:10.1038/nature09944 · Cited by 7,548 · see citing works
Changes of Intestinal Functions in Liver Cirrhosis
Fukui, H., & Wiest, R. (2016) · Inflammatory Intestinal Diseases · doi:10.1159/000444436 · Cited by 6,820 · see citing works
Metabolic Endotoxemia Initiates Obesity and Insulin Resistance
Cani, P. D., Amar, J., Iglesias, M. A., Poggi, M., Knauf, C., Bastelica, D., Neyrinck, A. M., Fava, F., Tuohy, K. M., Chabo, C., et al. (2007) · Diabetes · doi:10.2337/db06-1491 · Cited by 6,638 · see citing works
The ade4 Package: Implementing the Duality Diagram for Ecologists
Dray, S., & Dufour, A. (2007) · Journal of Statistical Software · doi:10.18637/jss.v022.i04 · Cited by 6,168 · see citing works
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579 · see citing works
Wong, W. L., Su, X., Li, X., Cheung, C. M. G., Klein, R., Cheng, C., & Wong, T. Y. (2014) · The Lancet Global Health · doi:10.1016/s2214-109x(13)70145-1 · Cited by 5,403 · see citing works
Host-Bacterial Mutualism in the Human Intestine
Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., & Gordon, J. I. (2005) · Science · doi:10.1126/science.1104816 · Cited by 5,277 · see citing works
Cani, P. D., Bibiloni, R., Knauf, C., Waget, A., Neyrinck, A. M., Delzenne, N. M., & Burcelin, R. (2008) · Diabetes · doi:10.2337/db07-1403 · Cited by 4,819 · see citing works
Prevalence of Age-Related Macular Degeneration in the United States
The Eye Diseases Prevalence Research Group* (2004) · Archives of Ophthalmology · doi:10.1001/archopht.122.4.564 · Cited by 2,742 · see citing works
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
Wikoff, W. R., Anfora, A. T., Liu, J., Schultz, P. G., Lesley, S. A., Peters, E. C., & Siuzdak, G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812874106 · Cited by 2,677 · see citing works
A framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650 · see citing works
HTLV-I ASSOCIATED MYELOPATHY, A NEW CLINICAL ENTITY
Osame, M., Usuku, K., Izumo, S., Ijichi, N., Amitani, H., Igata, A., Matsumoto, M., & Tara, M. (1986) · The Lancet · doi:10.1016/s0140-6736(86)91298-5 · Cited by 2,381 · see citing works
Metagenomic microbial community profiling using unique clade-specific marker genes
Segata, N., Waldron, L., Ballarini, A., Narasimhan, V., Jousson, O., & Huttenhower, C. (2012) · Nature Methods · doi:10.1038/nmeth.2066 · Cited by 1,776 · see citing works
H OW H OST -M ICROBIAL I NTERACTIONS S HAPE THE N UTRIENT E NVIRONMENT OF THE M AMMALIAN I NTESTINE
Hooper, L. V., Midtvedt, T., & Gordon, J. I. (2002) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.22.011602.092259 · Cited by 1,623 · see citing works
Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians
Biagi, E., Nylund, L., Candela, M., Ostan, R., Bucci, L., Pini, E., Nikkïla, J., Monti, D., Satokari, R., Franceschi, C., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010667 · Cited by 1,483 · see citing works
Symptomatic atherosclerosis is associated with an altered gut metagenome
Karlsson, F. H., Fåk, F., Nookaew, I., Tremaroli, V., Fagerberg, B., Petranovic, D., Bäckhed, F., & Nielsen, J. (2012) · Nature Communications · doi:10.1038/ncomms2266 · Cited by 1,371 · see citing works
The Universal Protein Resource (UniProt): an expanding universe of protein information
Wu, C. H. (2005) · Nucleic Acids Research · doi:10.1093/nar/gkj161 · Cited by 1,116 · see citing works
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Abubucker, S., Segata, N., Goll, J. B., Schubert, A. M., Izard, J., Cantarel, B. L., Rodriguez-Mueller, B., Zucker, J., Thiagarajan, M., Henrissat, B., et al. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002358 · Cited by 1,050 · see citing works
Dietary carotenoids, vitamins A, C, and E, and advanced age-related macular degeneration
Seddon, J. M. (1994) · JAMA: The Journal of the American Medical Association · doi:10.1001/jama.1994.03520180037032 · Cited by 993 · see citing works
Towards the human intestinal microbiota phylogenetic core
Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J., Ugarte, E., Muñoz‐Tamayo, R., Paslier, D. L. E., Nalin, R., et al. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01982.x · Cited by 927 · see citing works
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Ye, Y., & Doak, T. G. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000465 · Cited by 680 · see citing works
Lam, Y. Y., Ha, C. W. Y., Campbell, C. R., Mitchell, A. J., Dinudom, A., Oscarsson, J., Cook, D. I., Hunt, N. H., Caterson, I. D., Holmes, A. J., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034233 · Cited by 604 · see citing works
Ochoa-Repáraz, J., Mielcarz, D. W., Wang, Y., Begum-Haque, S., Dasgupta, S., Kasper, D. L., & Kasper, L. H. (2010) · Mucosal Immunology · doi:10.1038/mi.2010.29 · Cited by 507 · see citing works
Age-Related Eye Disease Study Research Group (2007) · Archives of Ophthalmology · doi:10.1001/archopht.125.9.1225 · Cited by 434 · see citing works
Horai, R., Zárate-Bladés, C. R., Dillenburg-Pilla, P., Chen, J., Kielczewski, J. L., Silver, P. B., Jittayasothorn, Y., Chan, C.-C., Yamane, H., Honda, K., et al. (2015) · Immunity · doi:10.1016/j.immuni.2015.07.014 · Cited by 402 · see citing works
(2007) · Archives of Ophthalmology · doi:10.1001/archopht.125.5.671 · Cited by 283 · see citing works
RAISED PLASMA-ORNITHINE AND GYRATE ATROPHY OF THE CHOROID AND RETINA
Simell, O., & Takki, K. K. (1973) · The Lancet · doi:10.1016/s0140-6736(73)90667-3 · Cited by 251 · see citing works
Seddon, J. M., Santangelo, S. L., Book, K., Chong, S., & Cote, J. (2003) · The American Journal of Human Genetics · doi:10.1086/378505 · Cited by 208 · see citing works
Gut microbiota influences pathological angiogenesis in obesity‐driven choroidal neovascularization
Andriessen, E. M., Wilson, A. M., Mawambo, G., Dejda, A., Miloudi, K., Sennlaub, F., & Sapieha, P. (2016) · EMBO Molecular Medicine · doi:10.15252/emmm.201606531 · Cited by 201 · see citing works
Chew, E. Y., Clemons, T. E., Agrón, E., Launer, L. J., Grodstein, F., & Bernstein, P. S. (2015) · JAMA · doi:10.1001/jama.2015.9677 · Cited by 191 · see citing works
Liu, A., Chang, J., Lin, Y., Shen, Z., & Bernstein, P. S. (2010) · Journal of Lipid Research · doi:10.1194/jlr.m007518 · Cited by 151 · see citing works
SanGiovanni, J. P., Chew, E. Y., Clemons, T. E., Ferris, F. L., Gensler, G. R., Lindblad, A. S., Milton, R. C., Seddon, J. M., & Sperduto, R. D. (2007) · Cited by 122 · see citing works
Zinc Competition among the Intestinal Microbiota
Gielda, L. M., & DiRita, V. J. (2012) · mBio · doi:10.1128/mbio.00171-12 · Cited by 121 · see citing works
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
Conley, M. N., Wong, C. P., Duyck, K. M., Hord, N. G., Ho, E., & Sharpton, T. J. (2016) · PeerJ · doi:10.7717/peerj.1854 · Cited by 108 · see citing works
Multivitamin-multimineral supplements and eye disease: age-related macular degeneration and cataract
Seddon, J. M. (2007) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/85.1.304s · Cited by 74 · see citing works
Summary Results and Recommendations From the Age-Related Eye Disease Study
Chew, E. Y. (2009) · Archives of Ophthalmology · doi:10.1001/archophthalmol.2009.312 · Cited by 62 · see citing works
Glutamate metabolic pathways and retinal function
Bui, B. V., Hu, R. G., Acosta, M. L., Donaldson, P. J., Vingrys, A. J., & Kalloniatis, M. (2009) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2009.06354.x · Cited by 60 · see citing works
Nutritional Risk Factors for Age-Related Macular Degeneration
Ersoy, L., Ristau, T., Lechanteur, Y. T. E., Hahn, M., Hoyng, C. B., Kirchhof, B., den Hollander, A. I., & Fauser, S. (2014) · BioMed Research International · doi:10.1155/2014/413150 · Cited by 46 · see citing works
Characterization of Fungal and Bacterial Components in Gut/Fecal Microbiome
Kirschner, R., Hsu, T., Tuan, N., Chen, C., & Huang, S. (2015) · Current Drug Metabolism · doi:10.2174/1389200216666150812124625 · Cited by 9 · see citing works
Flagged first, then by citations
2 of the 49 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Parker, A., Romano, S., Ansorge, R., Aboelnour, A., Le Gall, G., Savva, G. M., Pontifex, M. G., Telatin, A., Baker, D., Jones, E., et al. (2022) · Microbiome · doi:10.1186/s40168-022-01243-w · Cited by 368 · see citing works
Handa, J. T., Rickman, C. B., Dick, A. D., Gorin, M. B., Miller, J. W., Toth, C. A., Ueffing, M., Zarbin, M. A., & Farrer, L. A. (2019) · Nature Communications · doi:10.1038/s41467-019-11262-1 · Cited by 280 · see citing works
Rowan, S., Jiang, S., Korem, T., Szymanski, J., Chang, M.-L., Szelog, J., Cassalman, C., Dasuri, K., McGuire, C., Nagai, R., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1702302114 · Cited by 272 · see citing works
Aging progression of human gut microbiota
Xu, C., Zhu, H., & Qiu, P. (2019) · BMC Microbiology · doi:10.1186/s12866-019-1616-2 · Cited by 258 · see citing works
Hedin, C. R. H., Vavricka, S., Stagg, A. J., Schoepfer, A. M., Raine, T., Puig, L., Pleyer, U., Navarini, A. A., Jong, A. E. V. D. M., Maul, J., et al. (2018) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjy191 · Cited by 232 · see citing works
Ye, J., Lv, L., Wu, W., Li, Y., Shi, D., Fang, D., Guo, F., Jiang, H., Ren, Y., Ye, W., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01967 · Cited by 211 · see citing works
Chakravarthy, S. K., Jayasudha, R., Prashanthi, G. S., Ali, M. H., Sharma, S., Tyagi, M., & Shivaji, S. (2018) · Indian Journal of Microbiology · doi:10.1007/s12088-018-0746-9 · Cited by 193 · see citing works
On phagocytes and macular degeneration
Guillonneau, X., Eandi, C. M., Paques, M., Sahel, J.-A., Sapieha, P., & Sennlaub, F. (2017) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2017.06.002 · Cited by 185 · see citing works
Das, T., Jayasudha, R., Chakravarthy, S. K., Prashanthi, G. S., Bhargava, A., Tyagi, M., Rani, P. K., Pappuru, R. R., Sharma, S., & Shivaji, S. (2021) · Scientific Reports · doi:10.1038/s41598-021-82538-0 · Cited by 181 · see citing works
Dysbiosis and Implication of the Gut Microbiota in Diabetic Retinopathy
Huang, Y., Wang, Z., Ma, H., Ji, S., Chen, Z., Cui, Z., Chen, J., & Tang, S. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.646348 · Cited by 180 · see citing works
The epithelial barrier theory and its associated diseases
Sun, N., Öğülür, İ., Mitamura, Y., Yazıcı, D., Pat, Y., Bu, X., Li, M., Zhu, X., Babayev, H., Ardıçlı, S., et al. (2024) · Allergy · doi:10.1111/all.16318 · Cited by 188 · see citing works
Mucosal immunology of the ocular surface
de Paiva, C. S., Leger, A. J. S., & Caspi, R. R. (2022) · Mucosal Immunology · doi:10.1038/s41385-022-00551-6 · Cited by 141 · see citing works
Influence of gut microbiota on eye diseases: an overview
Napolitano, P., Filippelli, M., Davinelli, S., Bartollino, S., dell’Omo, R., & Costagliola, C. (2021) · Annals of Medicine · doi:10.1080/07853890.2021.1925150 · Cited by 115 · see citing works
The Gut–Eye Axis: Lessons Learned from Murine Models
Floyd, J. L., & Grant, M. B. (2020) · Ophthalmology and Therapy · doi:10.1007/s40123-020-00278-2 · Cited by 112 · see citing works
Effect of Curcumin on the Diversity of Gut Microbiota in Ovariectomized Rats
Zhang, Z., Chen, Y., Xiang, L., Wang, Z., Xiao, G. G., & Hu, J. (2017) · Nutrients · doi:10.3390/nu9101146 · Cited by 112 · see citing works
Xu, H., Huang, W., Hou, Q., Kwok, L., Wuri, L., Wang, Y., Ma, H., Sun, Z., & Zhang, H. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.00666 · Cited by 107 · see citing works
Can Gut Microbiota Affect Dry Eye Syndrome?
Moon, J., Yoon, C. H., Choi, S. H., & Kim, M. K. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21228443 · Cited by 98 · see citing works
Keenan, T. D. L., Agrón, E., Mares, J. A., Clemons, T. E., van Asten, F., Swaroop, A., & Chew, E. Y. (2020) · Ophthalmology · doi:10.1016/j.ophtha.2020.04.030 · Cited by 99 · see citing works
Gut mycobiomes are altered in people with type 2 Diabetes Mellitus and Diabetic Retinopathy
Jayasudha, R., Das, T., Chakravarthy, S. K., Prashanthi, G. S., Bhargava, A., Tyagi, M., Rani, P. K., Pappuru, R. R., & Shivaji, S. (2020) · PLoS ONE · doi:10.1371/journal.pone.0243077 · Cited by 96 · see citing works
The role of the gut microbiome in eye diseases
Zysset‐Burri, D. C., Morandi, S. C., Herzog, E. L., Berger, L., & Zinkernagel, M. S. (2022) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2022.101117 · Cited by 98 · see citing works
Self-citationRelationship between the microbiome and ocular health
Cavuoto, K. M., Banerjee, S., & Galor, A. (2019) · The Ocular Surface · doi:10.1016/j.jtos.2019.05.006 · Cited by 95 · see citing works
Zysset-Burri, D. C., Keller, I., Berger, L. E., Largiadèr, C. R., Wittwer, M., Wolf, S., & Zinkernagel, M. S. (2020) · npj Genomic Medicine · doi:10.1038/s41525-020-00141-0 · Cited by 94 · see citing works
Self-citationYe, J., Li, Y., Wu, W., Shi, D., Fang, D., Yang, L.-Y., Bian, X., Wu, J., Wáng, Q., Jiang, X., et al. (2018) · World Journal of Gastroenterology · doi:10.3748/wjg.v24.i23.2468 · Cited by 88 · see citing works
Alterations in the gut bacterial microbiome in fungal Keratitis patients
Chakravarthy, S. K., Jayasudha, R., Ranjith, K., Dutta, A., Pinna, N. K., Mande, S. S., Sharma, S., Garg, P., Murthy, S. I., & Shivaji, S. (2018) · PLoS ONE · doi:10.1371/journal.pone.0199640 · Cited by 88 · see citing works
The microbiome and ophthalmic disease
Baim, A. D., Movahedan, A., Farooq, A. V., & Skondra, D. (2018) · Experimental Biology and Medicine · doi:10.1177/1535370218813616 · Cited by 87 · see citing works
Ocular Microbiota and Intraocular Inflammation
Li, J. J., Yi, S., & Wei, L. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.609765 · Cited by 87 · see citing works
Targeting the Gut–Eye Axis: An Emerging Strategy to Face Ocular Diseases
Campagnoli, L. I. M., Varesi, A., Barbieri, A., Marchesi, N., & Pascale, A. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241713338 · Cited by 80 · see citing works
Chen, Y.-H., Xue, F., Yu, S.-F., Li, X.-S., Liu, L., Jia, Y., Yan, W., Tan, Q.-R., Wang, H., & Peng, Z. (2020) · Journal of Affective Disorders · doi:10.1016/j.jad.2020.12.143 · Cited by 80 · see citing works
Microbiota and Ocular Diseases
Xue, W., Li, J. J., Zou, Y., Zou, B., & Wei, L. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.759333 · Cited by 78 · see citing works
Alterations in the Ocular Surface Fungal Microbiome in Fungal Keratitis Patients
Prashanthi, G. S., Jayasudha, R., Chakravarthy, S. K., Padakandla, S. R., SaiAbhilash, C. R., Sharma, S., Bagga, B., Murthy, S. I., Garg, P., & Shivaji, S. (2019) · Microorganisms · doi:10.3390/microorganisms7090309 · Cited by 72 · see citing works
Gut microbiota composition and frailty in elderly patients with Chronic Kidney Disease
Margiotta, E., Miragoli, F., Callegari, M. L., Vettoretti, S., Caldiroli, L., Meneghini, M., Zanoni, F., & Messa, P. (2020) · PLoS ONE · doi:10.1371/journal.pone.0228530 · Cited by 71 · see citing works
Gut Microbiome in Retina Health: The Crucial Role of the Gut-Retina Axis
Scuderi, G., Troiani, E., & Minnella, A. M. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.726792 · Cited by 70 · see citing works
Composition and diversity of gut microbiota in diabetic retinopathy
Bai, J., Wan, Z., Zhang, Y., Wang, T., Xue, Y., & Peng, Q. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.926926 · Cited by 70 · see citing works
A Perspective of AMD Through the Eyes of Immunology
Copland, D. A., Theodoropoulou, S., Liu, J., & Dick, A. D. (2018) · Investigative Opthalmology & Visual Science · doi:10.1167/iovs.18-23893 · Cited by 66 · see citing works
Fluorescence Lifetimes of Drusen in Age-Related Macular Degeneration
Dysli, C., Fink, R., Wolf, S., & Zinkernagel, M. S. (2017) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.17-22184 · Cited by 65 · see citing works
Self-citationEpigenetics, microbiota, and intraocular inflammation: New paradigms of immune regulation in the eye
Wen, X., Hu, X., Li, M., Ge, X., Deng, Y., Bible, P. W., & Wei, L. (2018) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2018.01.001 · Cited by 64 · see citing works
Li, Y., Lv, L., Ye, J., Fang, D., Shi, D., Wu, W., Wang, Q., Wu, J., Yang, L., Bian, X., et al. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-9454-y · Cited by 63 · see citing works
Human Plasma Metabolomics in Age-Related Macular Degeneration: Meta-Analysis of Two Cohorts
Laíns, I., Chung, W., Kelly, R. S., Gil, J., Marques, M., Barreto, P., Murta, J., Kim, I. K., Vavvas, D. G., Miller, J. B., et al. (2019) · Metabolites · doi:10.3390/metabo9070127 · Cited by 62 · see citing works
A Systematic Overview of Type II and III Toxin-Antitoxin Systems with a Focus on Druggability
Kang, S., Kim, D., Jin, C., & Lee, B. (2018) · Toxins · doi:10.3390/toxins10120515 · Cited by 60 · see citing works
Importance of the intestinal microbiota in ocular inflammatory diseases: A review
Lin, P. (2019) · Clinical and Experimental Ophthalmology · doi:10.1111/ceo.13493 · Cited by 58 · see citing works
Jayasudha, R., Chakravarthy, S. K., Prashanthi, G. S., Sharma, S., Garg, P., Murthy, S. I., & Shivaji, S. (2018) · Journal of Biosciences · doi:10.1007/s12038-018-9798-6 · Cited by 57 · see citing works
Li, P., Huang, W., Yan, Y., Cheng, W., Liu, S., Huang, Y., Chen, W., Chen, Y., Gao, Y., Lu, W., et al. (2021) · Medical Science Monitor · doi:10.12659/msm.929027 · Cited by 56 · see citing works
The gut microbiota in retinal diseases
Bringer, M.-A., Gabrielle, P., Bron, A. M., Creuzot-Garcher, C. P., & Acar, N. (2021) · Experimental Eye Research · doi:10.1016/j.exer.2021.108867 · Cited by 51 · see citing works
Si, Z., Zheng, Y., & Zhao, J. (2023) · Biomolecules · doi:10.3390/biom13060901 · Cited by 55 · see citing works
A Review of the Role of the Intestinal Microbiota in Age-Related Macular Degeneration
Lin, P., McClintic, S. M., Nadeem, U., & Skondra, D. (2021) · Journal of Clinical Medicine · doi:10.3390/jcm10102072 · Cited by 48 · see citing works
Lipid metabolism and retinal diseases
Gabrielle, P. (2022) · Acta Ophthalmologica · doi:10.1111/aos.15226 · Cited by 48 · see citing works
Understanding the Interactions Between the Ocular Surface Microbiome and the Tear Proteome
Zysset‐Burri, D. C., Schlegel, I., Lincke, J., Jaggi, D., Keller, I., Heller, M., Lagache, S. B., Wolf, S., & Zinkernagel, M. S. (2021) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.62.10.8 · Cited by 45 · see citing works
Self-citationGut microbiota modify risk for dietary glycemia-induced age-related macular degeneration
Rowan, S., & Taylor, A. (2018) · Gut Microbes · doi:10.1080/19490976.2018.1435247 · Cited by 46 · see citing works
Alterations in the conjunctival surface bacterial microbiome in bacterial keratitis patients
Shivaji, S., Jayasudha, R., Chakravarthy, S. K., SaiAbhilash, C. R., Prashanthi, G. S., Sharma, S., Garg, P., & Murthy, S. I. (2020) · Experimental Eye Research · doi:10.1016/j.exer.2020.108418 · Cited by 45 · see citing works
The gut-retina axis: a new perspective in the prevention and treatment of diabetic retinopathy
Zhang, H., & Mo, Y. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1205846 · Cited by 42 · see citing works
EXIT STRATEGY IN A TREAT-AND-EXTEND REGIMEN FOR EXUDATIVE AGE-RELATED MACULAR DEGENERATION
Arendt, P., Yu, S., Munk, M. R., Ebneter, A., Wolf, S., & Zinkernagel, M. S. (2017) · Retina · doi:10.1097/iae.0000000000001923 · Cited by 42 · see citing works
Self-citationNayyar, A., Gindina, S., Barron, A., Hu, Y., & Danias, J. (2020) · Human Genomics · doi:10.1186/s40246-020-00257-5 · Cited by 42 · see citing works
Apolipoprotein A-I Mimetic Peptide L-4F Removes Bruch's Membrane Lipids in Aged Nonhuman Primates
Rudolf, M., Curcio, C. A., Schlötzer-Schrehardt, U. M., Sefat, A. M. M., Tura, A., Aherrahrou, Z., Brinkmann, M. P., Grisanti, S., Miura, Y., & Ranjbar, M. (2019) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.18-25786 · Cited by 41 · see citing works
Gut microbiota and derived metabolomic profiling in glaucoma with progressive neurodegeneration
Zhang, Y., Zhou, X., & Lu, Y. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.968992 · Cited by 41 · see citing works
Microbiome Dysbiosis: A Pathological Mechanism at the Intersection of Obesity and Glaucoma
Pezzino, S., Sofia, M., Greco, L. P., Litrico, G., Filippello, G., Sarvà, I., Greca, G. L., & Latteri, S. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24021166 · Cited by 39 · see citing works
The Human Ocular Surface Microbiome and Its Associations with the Tear Proteome in Dry Eye Disease
Schlegel, I., de Pontouraude, C. M. F. D. G. M., Lincke, J., Keller, I., Zinkernagel, M. S., & Zysset‐Burri, D. C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241814091 · Cited by 39 · see citing works
Self-citationZysset‐Burri, D. C., Keller, I., Berger, L., Neyer, P. J., Steuer, C., Wolf, S., & Zinkernagel, M. S. (2019) · Scientific Reports · doi:10.1038/s41598-019-51698-5 · Cited by 38 · see citing works
Self-citationGut microbiota and eye diseases: a bibliometric study and visualization analysis
Fu, X., Tan, H., Huang, L., Chen, W., Ren, X. Z., & Chen, D. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1225859 · Cited by 38 · see citing works
The early gut microbiome could protect against severe retinopathy of prematurity
Skondra, D., Rodriguez, S. H., Sharma, A., Gilbert, J. A., Andrews, B., & Claud, E. C. (2020) · Journal of American Association for Pediatric Ophthalmology and Strabismus · doi:10.1016/j.jaapos.2020.03.010 · Cited by 37 · see citing works
Retinitis pigmentosa is associated with shifts in the gut microbiome
Kutsyr, O., Maestre‐Carballa, L., Gómez, M. L., Martínez‐García, M., Cuenca, N., & Lax, P. (2021) · Scientific Reports · doi:10.1038/s41598-021-86052-1 · Cited by 37 · see citing works
Yoon, C. H., Ryu, J. S., Moon, J., & Kim, M. K. (2021) · BMC Microbiology · doi:10.1186/s12866-021-02173-7 · Cited by 36 · see citing works
Alterations of the intestinal microbiota in age-related macular degeneration
Zhang, Y., Wang, T., Wan, Z., Bai, J., Xue, Y., Dai, R., Wang, M., & Peng, Q. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1069325 · Cited by 36 · see citing works
The Emerging Role of Gut Microbiota in Age-Related Macular Degeneration
Xiao, J. F., Zhang, J. Y., Luo, W., He, P. C., & Skondra, D. (2023) · American Journal Of Pathology · doi:10.1016/j.ajpath.2023.04.006 · Cited by 36 · see citing works
The gut-eye axis: the retinal/ocular degenerative diseases and the emergent therapeutic strategies
Kammoun, S., Rekik, M., Dlensi, A., Aloulou, S., Smaoui, W., Sellami, S., Trigui, K., Rahma, G., Chaari, I., Sellami, H., et al. (2024) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2024.1468187 · Cited by 35 · see citing works
Connect between gut microbiome and diseases of the human eye
Shivaji, S. (2019) · Journal of Biosciences · doi:10.1007/s12038-019-9931-1 · Cited by 35 · see citing works
Investigating the Ocular Surface Microbiome: What Can It Tell Us?
Peter, V. G., Morandi, S. C., Herzog, E. L., Zinkernagel, M. S., & Zysset‐Burri, D. C. (2023) · Clinical ophthalmology · doi:10.2147/opth.s359304 · Cited by 36 · see citing works
Self-citationWhat is the impact of microbiota on dry eye: a literature review of the gut-eye axis
Song, J., Dong, H. Y., Wang, T., Yu, H., Yu, J., Ma, S., Song, X., Sun, Q., Xu, Y., & Liu, M. (2024) · BMC Ophthalmology · doi:10.1186/s12886-024-03526-2 · Cited by 33 · see citing works
Rowan, S., Jiang, S., Chang, M., Volkin, J., Cassalman, C., Smith, K., Streeter, M. D., Spiegel, D. A., Neto, C. A. M., Rabbani, N., et al. (2020) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2020.02.010 · Cited by 33 · see citing works
Recent Insights into the Role of Gut Microbiota in Diabetic Retinopathy
Jiao, J., Yu, H., Yao, L., Li, L., Yang, X., & Liu, L. (2021) · Journal of Inflammation Research · doi:10.2147/jir.s336148 · Cited by 32 · see citing works
Immune response in retinal degenerative diseases – Time to rethink?
Xu, H., & Chen, M. (2022) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2022.102350 · Cited by 32 · see citing works
A systematic review of gut microbiome and ocular inflammatory diseases
Shivaji, S. (2021) · Indian Journal of Ophthalmology · doi:10.4103/ijo.ijo_1362_20 · Cited by 32 · see citing works
Mao, D.-S., Tao, B., Sheng, S.-Y., Jin, H.-L., Chen, W., Gao, H., Deng, J., Li, Z., Chen, F., Chan, S., et al. (2023) · Investigative Ophthalmology and Visual Science · doi:10.1167/iovs.64.12.32 · Cited by 30 · see citing works
Local oral and nasal microbiome diversity in age-related macular degeneration
Rullo, J., Far, P. M., Quinn, M. P., Sharma, N. K., Bae, S. S., Irrcher, I., & Sharma, S. (2020) · Scientific Reports · doi:10.1038/s41598-020-60674-3 · Cited by 30 · see citing works
Teodori, L., Petrignani, I., Giuliani, A., Prattichizzo, F., Gurău, F., Matacchione, G., Olivieri, F., Coppari, S., & Albertini, M. C. (2019) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2019.111127 · Cited by 29 · see citing works
Inside out: Relations between the microbiome, nutrition, and eye health
Grant, M. B., Bernstein, P. S., Boesze‐Battaglia, K., Chew, E. Y., Curcio, C. A., Kenney, M. C., Klaver, C. C. W., Philp, N. J., Rowan, S., Sparrow, J. R., et al. (2022) · Experimental Eye Research · doi:10.1016/j.exer.2022.109216 · Cited by 30 · see citing works
Li, C., & Lu, P. (2023) · Nutrients · doi:10.3390/nu15214646 · Cited by 29 · see citing works
Retinal Vein Occlusion–Background Knowledge and Foreground Knowledge Prospects—A Review
Lendzioszek, M., Bryl, A., Poppe, E., Zorena, K., & Mrugacz, M. (2024) · Journal of Clinical Medicine · doi:10.3390/jcm13133950 · Cited by 28 · see citing works
Koh, Y., Lee, P., Kuo, Y., Nagabhushanam, K., Ho, C., & Pan, M. (2021) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202100434 · Cited by 27 · see citing works
Exploring the Gut Microbiota–Retina Axis: Implications for Health and Disease
Schiavone, N., Isoldi, G., Calcagno, S., Rovida, E., Antiga, E., Almeida, C. V. D., & Lulli, M. (2025) · Microorganisms · doi:10.3390/microorganisms13051101 · Cited by 28 · see citing works
Sun, X., Shen, J., Liu, C., Li, S., Peng, Y., Chen, C., Yuan, B., Gao, Y., Meng, X., Jiang, H., et al. (2019) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.18.0984 · Cited by 26 · see citing works
Biswas, L., Ibrahim, K. S., Li, X., Zhou, X., Zeng, Z., Craft, J. A., & Shu, X. (2021) · Experimental Eye Research · doi:10.1016/j.exer.2021.108625 · Cited by 26 · see citing works
Dysbiosis of gut microbiome contributes to glaucoma pathogenesis
Chen, S., Wang, Y., Liu, Y., Li, F., Chen, Y., Fang, X., Wen, T., Xu, S., Kermany, D., Deng, S., et al. (2022) · MedComm – Future Medicine · doi:10.1002/mef2.28 · Cited by 26 · see citing works
A Review of the Impact of Alterations in Gut Microbiome on the Immunopathogenesis of Ocular Diseases
Bu, Y., Chan, Y. K., Wong, H. L., Poon, S. H. L., Lo, A., Shih, K. C., & Tong, L. H. T. (2021) · Journal of Clinical Medicine · doi:10.3390/jcm10204694 · Cited by 26 · see citing works
Gut microbiota and age-related macular degeneration: A growing partnership
Lima-Fontes, M., Meira, L. A. A., Barata, P., Falcão, M. S., & Carneiro, Â. M. (2021) · Survey of Ophthalmology · doi:10.1016/j.survophthal.2021.11.009 · Cited by 25 · see citing works
Xue, W., Peng, P., Wen, X., Meng, H., Qin, Y., Deng, T., Guo, S., Chen, T., Li, X., Liang, J., et al. (2023) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.64.5.11 · Cited by 25 · see citing works
Oral Metformin Inhibits Choroidal Neovascularization by Modulating the Gut-Retina Axis
Zhang, J. Y., Xiao, J. F., Xie, B., Barba, H., Boachie-Mensah, M., Shah, R. N., Nadeem, U., Spedale, M., Dylla, N. P., Lin, H., et al. (2023) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.64.15.21 · Cited by 25 · see citing works
Lynch, A. M., Wagner, B. D., Palestine, A. G., Janjić, N., Patnaik, J. L., Mathias, M. T., Siringo, F. S., & Mandava, N. (2020) · Translational Vision Science & Technology · doi:10.1167/tvst.9.10.12 · Cited by 24 · see citing works
Evidence Suggesting the Role of Gut Dysbiosis in Diabetic Retinopathy
Thakur, P. S., Aggarwal, D., Takkar, B., Shivaji, S., & Das, T. (2022) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.63.8.21 · Cited by 24 · see citing works
Zhang, J. Y., Xie, B., Barba, H., Nadeem, U., Movahedan, A., Deng, N., Spedale, M., D’Souza, M., Luo, W., Leone, V., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23179676 · Cited by 24 · see citing works
Donabedian, P. L., Dawson, E. A., Li, Q., & Chen, J. (2021) · Ophthalmic Research · doi:10.1159/000519457 · Cited by 22 · see citing works
Do Oral Pathogens Inhabit the Eye and Play a Role in Ocular Diseases?
Arjunan, P., & Swaminathan, R. (2022) · Journal of Clinical Medicine · doi:10.3390/jcm11102938 · Cited by 22 · see citing works
Liu, K., Zou, J., Yuan, R., Fan, H., Hu, H., Cheng, Y., Liu, J., Zou, H., & You, Z. (2023) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.64.7.22 · Cited by 22 · see citing works
Altered Fecal Microbiome and Metabolome in a Mouse Model of Choroidal Neovascularization
Li, Y., Cai, Y., Huang, Q., Tan, W., Li, B., Zhou, H., Wang, Z., Zou, J., Ding, C., Jiang, B., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.738796 · Cited by 20 · see citing works
Gut Microbiota Profiles in Myopes and Nonmyopes
Omar, W. E. W., Singh, G., McBain, A. J., Cruickshank, F. E., & Radhakrishnan, H. (2024) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.65.5.2 · Cited by 19 · see citing works
Age-related functional changes of intestinal flora in rats
Yang, Y., Chen, T., Zhang, X., & Wang, X. (2021) · FEMS Microbiology Letters · doi:10.1093/femsle/fnab051 · Cited by 19 · see citing works
High-Fat Diet Alters the Retinal Transcriptome in the Absence of Gut Microbiota
Dao, D., Xie, B., Nadeem, U., Xiao, J. F., Movahedan, A., D’Souza, M., Leone, V., Hariprasad, S. M., Chang, E. B., Sulakhe, D., et al. (2021) · Cells · doi:10.3390/cells10082119 · Cited by 19 · see citing works
Microbiome and Retinal Vascular Diseases
Lincke, J., Christe, L., Unterlauft, J. D., Zinkernagel, M. S., & Zysset‐Burri, D. C. (2023) · American Journal Of Pathology · doi:10.1016/j.ajpath.2023.02.017 · Cited by 17 · see citing works
Self-citationMolecular mechanisms of retinal ischemia
Fortmann, S. D., & Grant, M. B. (2018) · Current Opinion in Physiology · doi:10.1016/j.cophys.2018.12.008 · Cited by 18 · see citing works
Zebrafish Axenic Larvae Colonization with Human Intestinal Microbiota
Arias-Jayo, N., Alonso-Sáez, L., Ramírez-García, A., & Pardo, M. (2017) · Zebrafish · doi:10.1089/zeb.2017.1460 · Cited by 12 · see citing works
Baldi, S., Pagliai, G., Gloria, L. D., Pallecchi, M., Barca, F., Pieri, B., Bartolucci, G., Ramazzotti, M., Amedei, A., Palendri, G., et al. (2024) · Nutrients · doi:10.3390/nu16223971 · Cited by 17 · see citing works
- Authors
- Zinkernagel, M. S., Zysset-Burri, D. C., Keller, I., Berger, L. E., Leichtle, A. B., Largiadèr, C. R., Fiedler, G. M., & Wolf, S.
- Affiliations
- University of Bern (CH)
- Corresponding author
- Zinkernagel, Martin S.
- Venue
- Scientific Reports
- Published
- 2017-01-17
- Volume
- 7
- Issue
- 1
- Pages
- 40826-40826
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC5240106
- OpenAlex
- W2572128045
- Cited by
- 229
- References
- 49
- Citations by year
- 2026: 28 · 2025: 24 · 2024: 28 · 2023: 29 · 2022: 31 · 2021: 31 · 2020: 21 · 2019: 16 · 2018: 15 · 2017: 6
- FWCI
- 6.48
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Bern Open Repository and Information System (University of Bern) (submittedVersion, cc-by)
- Open Access CRIS of the University of Bern
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Ophthalmology › Retinal Diseases and Treatments
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- age-related macular degeneration, gut microbiota, gut metagenome, neovascular AMD, Anaerotruncus, Oscillibacter, Ruminococcus torques, Eubacterium ventriosum, Bacteroides eggerthii, glutamate degradation, arginine biosynthesis, fatty acid elongation, inflammation, host metabolism, microbiota-targeted interventions
- MeSH terms
- Gastrointestinal Microbiome, Aged, Bacteroides, Female, Humans, Macular Degeneration, Male, Middle Aged, Case-Control Studies, Ruminococcus
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