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Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia
Abstract
Significance: Beringia gave rise to the first Western Hemisphere colonists, although the genetic characterization of that source population has remained obscure. We report two mitogenomes from human remains within Beringia, with an age (∼11,500 cal B.P.) that postdates the end of the initial colonization by only a few millennia. The mitochondrial lineages identified (B2, C1b) are rare to absent in modern northern populations, indicating greater genetic diversity in early Beringia than in modern populations of the region. The antiquity and geographic location of these two burials, and the combined genomic and archaeological analyses, provide new perspectives on the link between Asia and the Americas, and the genetic makeup of the first Americans.
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Dispersing human groups were genetically isolated in Beringia for up to 8,000 years before moving south of the ice sheets into North America.
“They also suggest that dispersing groups reached Beringia during the LGM (dated to ca. 18,000–24,000 cal BP) where they were genetically isolated for up to 8,000 years before moving south of the ice-sheets into North America [3–11].”
From Earliest Human Presence in North America Dated to the Last Glacial Maximum: New Radiocarbon Dates from Bluefish Caves, Canada (2017) · cites this paper as [8]
Dispersing human groups reached Beringia during the Last Glacial Maximum, dated to ca. 18,000-24,000 cal BP.
“They also suggest that dispersing groups reached Beringia during the LGM (dated to ca. 18,000–24,000 cal BP) where they were genetically isolated for up to 8,000 years before moving south of the ice-sheets into North America [3–11].”
From Earliest Human Presence in North America Dated to the Last Glacial Maximum: New Radiocarbon Dates from Bluefish Caves, Canada (2017) · cites this paper as [8]
Human populations migrating into North America originated in Siberia.
“Recent genetic and palaeogenetic analyses [3–10], as well as dental morphological evidence [11], confirm that human populations migrating into North America originated in Siberia.”
From Earliest Human Presence in North America Dated to the Last Glacial Maximum: New Radiocarbon Dates from Bluefish Caves, Canada (2017) · cites this paper as [8]
The first inhabitants of Beringia probably dispersed along a Pacific coastal route, possibly as early as ca. 16,000 cal BP, and settled south of the ice sheets before the ice-free corridor became a viable route.
“It is now more widely recognized that the first inhabitants of Beringia probably dispersed along a Pacific coastal route, possibly as early as ca. 16,000 cal BP, and settled south of the ice sheets before the ice-free corridor became a viable route [3–12,77–79].”
From Earliest Human Presence in North America Dated to the Last Glacial Maximum: New Radiocarbon Dates from Bluefish Caves, Canada (2017) · cites this paper as [8]
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BEAST 2: a software platform for Bayesian evolutionary analysis
Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M. A., Rambaut, A., & Drummond, A. J. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003537 · Cited by 6,527
Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
van Oven, M., & Kayser, M. (2009) · Human Mutation · doi:10.1002/humu.20921 · Cited by 1,810
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. F., & Orlando, L. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt193 · Cited by 1,669
Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314445110 · Cited by 1,443
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature · doi:10.1038/nature12736 · Cited by 963
A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes
Fu, Q., Mittnik, A., Johnson, P. L. F., Bos, K., Lari, M., Bollongino, R., Sun, C., Giemsch, L., Schmitz, R., Burger, J., et al. (2013) · Current Biology · doi:10.1016/j.cub.2013.02.044 · Cited by 709
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
Rasmussen, M., Anzick, S. L., Waters, M. R., Skoglund, P., DeGiorgio, M., Stafford, T. W., Rasmussen, S., Moltke, I., Albrechtsen, A., Doyle, S. M., et al. (2014) · Nature · doi:10.1038/nature13025 · Cited by 562
Genomic evidence for the Pleistocene and recent population history of Native Americans
Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, M. C., Malaspinas, A.-S., et al. (2015) · Science · doi:10.1126/science.aab3884 · Cited by 540
The ancestry and affiliations of Kennewick Man
Rasmussen, M., Sikora, M., Albrechtsen, A., Korneliussen, T. S., Moreno-Mayar, J. V., Poznik, G. D., Zollikofer, C. P. E., Ponce de León, M. S., Allentoft, M. E., Moltke, I., et al. (2015) · Nature · doi:10.1038/nature14625 · Cited by 288
Flagged first, then by citations
Research works printed but not linked: 46
- J de Acosta Natural and Moral History of the Indies (Duke Univ Press, Durham, NC, 2002).
- EJ Dixon Bones, Boats and Bison: Archaeology and the First Colonization of Western North America (Univ of New Mexico Press, Albuquerque, NM, 1999).
- DJ Meltzer First Peoples in a New World: Colonizing Ice Age America (Univ of California Press, Berkeley, CA, 2010).
- JF Hoffecker, SA Elias, DH O’Rourke, Anthropology. Out of Beringia? Science 343, 979–980 (2014). · DOI
- T Goebel, MR Waters, DH O’Rourke, The late Pleistocene dispersal of modern humans in the Americas. Science 319, 1497–1502 (2008). · DOI · Paper page
- E Tamm, , Beringian standstill and spread of Native American founders. PLoS One 2, e829 (2007). · DOI · Paper page
- D Reich, , Reconstructing Native American population history. Nature 488, 370–374 (2012). · DOI · Paper page
- M Raghavan, , The genetic prehistory of the New World Arctic. Science 345, 1255832 (2014). · DOI · Paper page
- CJ Mulligan, A Kitchen, MM Miyamoto, Updated three-stage model for the peopling of the Americas. PLoS One 3, e3199 (2008). · DOI · Paper page
- , ed TD Dillehay (Smithsonian Institution Press, Washington, DC) The Archaeological Context and Interpretation Vol 2 (1997).
- A Achilli, , The phylogeny of the four pan-American MtDNA haplogroups: Implications for evolutionary and disease studies. PLoS One 3, e1764 (2008). · DOI
- Y Cui, , Ancient DNA analysis of mid-holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes. PLoS One 8, e66948 (2013). · DOI
- NJ Fagundes, , Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas. Am J Hum Genet 82, 583–592 (2008). · DOI · Paper page
- J Pickrell, D Reich, Toward a new history and geography of human genes informed by ancient DNA. Trends Genet 30, 377–389 (2014). · DOI
- JC Chatters, , Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans. Science 344, 750–754 (2014). · DOI
- JA Raff, DA Bolnick, J Tackney, DH O’Rourke, Ancient DNA perspectives on American colonization and population history. Am J Phys Anthropol 146, 503–514 (2011). · DOI
- BA Potter, JD Irish, JD Reuther, C Gelvin-Reymiller, VT Holliday, A terminal Pleistocene child cremation and residential structure from eastern Beringia. Science 331, 1058–1062 (2011). · DOI
- BA Potter, JD Reuther, PM Bowers, C Gelvin-Reymiller, Little Delta Dune site: A Late Pleistocene multi-component site in Central Alaska. Curr Res Pleistocene 25, 132–135 (2008).
- BA Potter, JD Irish, JD Reuther, HJ McKinney, New insights into Eastern Beringian mortuary behavior: A terminal Pleistocene double infant burial at Upward Sun River. Proc Natl Acad Sci USA 111, 17060–17065 (2014). · DOI
- T Maricic, M Whitten, S Pääbo, Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS One 5, e14004 (2010). · DOI
- C Der Sarkissian, , Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. PLoS One; Genographic Consortium 9, e87612 (2014). · DOI
- UA Perego, , The initial peopling of the Americas: A growing number of founding mitochondrial genomes from Beringia. Genome Res 20, 1174–1179 (2010). · DOI
- P Soares, , Correcting for purifying selection: An improved human mitochondrial molecular clock. Am J Hum Genet 84, 740–759 (2009). · DOI
- EB Starikovskaya, , Mitochondrial DNA diversity in indigenous populations of the southern extent of Siberia, and the origins of Native American haplogroups. Ann Hum Genet 69, 67–89 (2005). · DOI
- J Raff, J Tackney, DH O’Rourke, South from Alaska: A pilot aDNA study of genetic history on the Alaska Peninsula and the eastern Aleutians. Hum Biol 82, 677–693 (2010). · DOI
- M Derenko, , Origin and post-glacial dispersal of mitochondrial DNA haplogroups C and D in northern Asia. PLoS One 5, e15214 (2010). · DOI
- SS Ebenesersdóttir, , A new subclade of mtDNA haplogroup C1 found in Icelanders: Evidence of pre-Columbian contact? Am J Phys Anthropol 144, 92–99 (2011). · DOI
- JD Reuther Late Glacial and Early Holocene Geoarchaeology and Terrestrial Paleoecology in the Lowlands of the Middle Tanana Valley, Subarctic Alaska (Univ of Arizona, Tucson, AZ, 2013).
- HM Liversidge, T Molleson, Variation in crown and root formation and eruption of human deciduous teeth. Am J Phys Anthropol 123, 172–180 (2004). · DOI
- SJ AlQahtani Atlas of Tooth Development and Eruption (Queen Mary University of London, Barts and the London School of Medicine and Dentistry, London, 2008).
- H Schutkowski, Sex determination of infant and juvenile skeletons: I. Morphognostic features. Am J Phys Anthropol 90, 199–205 (1993). · DOI
- CG Turner, CR Nichol, GR Scott in Advances in Dental Anthropology, eds M Kelly, C Larsen (Wiley-Liss, New York), pp. 13–32 (1991).
- PW Sciulli, Evolution of the dentition in prehistoric Ohio Valley Native Americans: II. Morphology of the deciduous dentition. Am J Phys Anthropol 106, 189–205 (1998). · DOI
- N Rohland, M Hofreiter, Ancient DNA extraction from bones and teeth. Nat Protoc 2, 1756–1762 (2007). · DOI
- N Rohland, M Hofreiter, Comparison and optimization of ancient DNA extraction. Biotechniques 42, 343–352 (2007). · DOI
- A Krishnan, M Sweeney, J Vasic, D Galbraith, B Vasic, Barcodes for DNA sequencing with guaranteed error correction capability. Electron Lett 47, 236–237 (2011). · DOI
- M-T Gansauge, M Meyer, Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat Protoc 8, 737–748 (2013). · DOI · Paper page
- H Li, , The sequence alignment/map format and SAMtools. Bioinformatics; 1000 Genome Project Data Processing Subgroup 25, 2078–2079 (2009). · DOI · Paper page
- MA DePristo, , A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43, 491–498 (2011). · DOI
- H Thorvaldsdóttir, JT Robinson, JP Mesirov, Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration. Brief Bioinform 14, 178–192 (2013). · DOI · Paper page
- M Martin, Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17, 10–12 (2011). · DOI · Paper page
- AW Briggs, , Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA 104, 14616–14621 (2007). · DOI · Paper page
- K Katoh, DM Standley, MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol Biol Evol 30, 772–780 (2013). · DOI · Paper page
- R Lanfear, B Calcott, SYW Ho, S Guindon, Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol 29, 1695–1701 (2012). · DOI · Paper page
- A Stamatakis, RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313 (2014). · DOI · Paper page
- Z Yang, PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24, 1586–1591 (2007). · DOI · Paper page
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Metadata
- Authors
- Tackney, J. C., Potter, B. A., Raff, J., Powers, M., Watkins, W. S., Warner, D., Reuther, J. D., Irish, J. D., & O’Rourke, D. H.
- Affiliations
- Department of Anthropology, University of Utah, Salt Lake City, UT 84112;
- Department of Anthropology, University of Alaska, Fairbanks, AK 99775;
- Department of Anthropology, University of Kansas, Lawrence, KS 66045;
- DNA Sequencing Core, University of Utah, Salt Lake City, UT 84112;
- Department of Human Genetics, University of Utah, Salt Lake City, UT 84112;
- Research Centre in Evolutionary Anthropology and Paleoecology, Liverpool John Moores University, Liverpool L33AF, United Kingdom
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2015-10-26
- Volume
- 112
- Issue
- 45
- Pages
- 13833-13838
- ISSN
- 0027-8424
- 1091-6490
- Cited by
- 60
- References
- 9
- Language
- en
- Funders
- National Science Foundation (OPP-0732846, OPP-1137078, OPP-1138811, OPP-1223119)
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