Mitochondrial diversity and the origins of African and European cattle
Open accessAbstract
The nature of domestic cattle origins in Africa are unclear as archaeological data are relatively sparse. The earliest domesticates were humpless, or Bos taurus, in morphology and may have shared a common origin with the ancestors of European cattle in the Near East. Alternatively, local strains of the wild ox, the aurochs, may have been adopted by peoples in either continent either before or after cultural influence from the Levant. This study examines mitochondrial DNA displacement loop sequence variation in 90 extant bovines drawn from Africa, Europe, and India. Phylogeny estimation and analysis of molecular variance verify that sequences cluster significantly into continental groups. The Indian Bos indicus samples are most markedly distinct from the others, which is indicative of a B. taurus nature for both European and African ancestors. When a calibration of sequence divergence is performed using comparisons with bison sequences and an estimate of 1 Myr since the Bison/Bos Leptobos common ancestor, estimates of 117-275,000 B.P. and 22-26,000 B.P. are obtained for the separation between Indians and others and between African and European ancestors, respectively. As cattle domestication is thought to have occurred approximately 10,000 B.P., these estimates suggest the domestication of genetically discrete aurochsen strains as the origins of each continental population. Additionally, patterns of variation that are indicative of population expansions (probably associated with the domestication process) are discernible in Africa and Europe. Notably, the genetic signatures of these expansions are clearly younger than the corresponding signature of African/European divergence.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
All African cattle breeds analyzed so far carried taurine mtDNA haplotypes, which suggests that the waves of indicine arrival into Africa were male-mediated.
“A study on mtDNA indicates that all African cattle breeds analyzed so far carried taurine mtDNA haplotypes which suggests that these waves of indicine arrival into Africa were male-mediated (Bradley et al., 1996; Bonfiglio et al., 2012).”
From Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed (2019) · cites this paper as Bradley et al., 1996
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Evidence for Two Independent Domestications of Cattle
Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M., & Cunningham, P. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.7.2757 · Cited by 812 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 10
- [2]Payne, W. J. A. (1991) Cattle Genetic Resources, ed. Hickman, C. G., (Elsevier Science), World Animal Series B7, 51–72.
- [6]Meadow, R. H. (1993) in Harappan Civilization, 2nd edition, ed. G. Possehl. (New Dehli, Oxford and IBH) pp. 295–320.
- [7]Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M. & Cunningham, E. P. (1994) Proc. Natl. Acad. Sci. USA 91, 2757–2761.
- [8]Muzzolini, A. (1983) L'Art Rupestre du Sahara Central: Classification et Chronologie. Le Boeuf dans la Préhistoire Africaine. Ph.D. thesis. (Univ. of Provence, Aix-Marseille).
- [10]Gautier, A. (1987) in Prehistory of Arid North Africa, Essays in Honor of Fred Wendorf. ed. A. E. Close (Southern Methodist University Press, Dallas, TX), pp. 163–180.
- [13]Meadow, R. H. (1989) in The Walking Larder: Patterns of Domestication, Pastoralism, and Predation. ed. Clutton-Brock, J. (Allen and Unwin, London), pp. 80–10.
- [26]Horai, S., Kondo, R., Murayama, K., Hayashi, S., Koike, H. & Nakai, N. (1991) Philos. Trans. R. Soc. Lond. 333, 409–417.
- [32]Lundstrom, R., Tavaré, S. & Ward, R. H. (1992) Proc. Natl. Acad. Sci. USA 89, 5961–5965.
- [33]Cavalli-Sforza, L. L., Menozzi, P. & Piazza, A. (1994) The History and Geography of Human Genes (Princeton Univ. Press, Princeton, NJ), pp. 290–301.
- [35]Gautier, A. (1984) in Prehistory of the Éastern Sahara. ed. Closc, A. E. (Academic Press, New York), pp. 317–344.
Cited by
Sorted by citations
Genetic Evidence for Near-Eastern Origins of European Cattle
Troy, C. S., MacHugh, D. E., Bailey, J. F., Magee, D. A., Loftus, R. T., Cunningham, P., Chamberlain, A. T., Sykes, B. C., & Bradley, D. G. (2001) · Nature · doi:10.1038/35074088 · Cited by 627 · see citing works
Self-citationDNA markers reveal the complexity of livestock domestication
Bruford, M. W., Bradley, D. G., & Luikart, G. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1203 · Cited by 599 · see citing works
Self-citationAfrican Pastoralism: Genetic Imprints of Origins and Migrations
Hanotte, O., Bradley, D. G., Ochieng, J. W., Verjee, Y., Hill, E. W., & Rege, J. E. O. (2002) · Science · doi:10.1126/science.1069878 · Cited by 567 · see citing works
Self-citationWorldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Molina Alcalá, A., Sonstegard, T. S., Hanotte, O., Götherström, A., Seabury, C. M., Praharani, L., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004254 · Cited by 521 · see citing works
Cattle Before Crops: The Beginnings of Food Production in Africa
Marshall, F., & Hildebrand, E. (2002) · Journal of World Prehistory · doi:10.1023/a:1019954903395 · Cited by 445 · see citing works
Chen, N., Cai, Y., Chen, Q., Li, R., Wang, K., Huang, Y., Hu, S., Huang, S., Zhang, H., Zheng, Z., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04737-0 · Cited by 403 · see citing works
Self-citationThe Origin of European Cattle: Evidence from Modern and Ancient DNA
Beja-Pereira, A., Caramelli, D., Lalueza-Fox, C., Vernesi, C., Ferrand, N., Casoli, A., Goyache, F., Royo, L. J., Conti, S., Lari, M., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509210103 · Cited by 342 · see citing works
On the Origin of Cattle: How Aurochs Became Cattle and Colonized the World
Ajmone‐Marsan, P., Garcia, J. F., & Lenstra, J. A. (2010) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.20267 · Cited by 287 · see citing works
Edwards, C. J., Bollongino, R., Scheu, A., Chamberlain, A., Tresset, A., Vigne, J.-D., Baird, J. F., Larson, G., Ho, S. Y. W., Heupink, T. H., et al. (2007) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2007.0020 · Cited by 266 · see citing works
Self-citationHanotte, O., Tawah, C. L., Bradley, D. G., Okomo, M., Verjee, Y., Ochieng, J., & Rege, J. E. O. (2000) · Molecular Ecology · doi:10.1046/j.1365-294x.2000.00858.x · Cited by 257 · see citing works
Self-citationAncient Cattle Genomics, Origins, and Rapid Turnover in the Fertile Crescent
Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Maisano Delser, P., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., et al. (2019) · Science · doi:10.1126/science.aav1002 · Cited by 227 · see citing works
Self-citationNew World Cattle Show Ancestry from Multiple Independent Domestication Events
McTavish, E. J., Decker, J. E., Schnabel, R. D., Taylor, J. F., & Hillis, D. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1303367110 · Cited by 218 · see citing works
The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome
Achilli, A., Bonfiglio, S., Olivieri, A., Malusà, A., Pala, M., Kashani, B. H., Perego, U. A., Ajmone-Marsan, P., Liotta, L., Semino, O., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005753 · Cited by 212 · see citing works
Grus, W. E., Shi, P., Zhang, Y.-P., & Zhang, J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0501589102 · Cited by 193 · see citing works
Domestication of Cattle: Two or Three Events?
Pitt, D., Sevane, N., Nicolazzi, E. L., MacHugh, D. E., Park, S. D. E., Colli, L., Martinez, R., Bruford, M. W., & Orozco‐terWengel, P. (2019) · Evolutionary Applications · doi:10.1111/eva.12674 · Cited by 195 · see citing works
Modern taurine cattle descended from small number of near-eastern founders
Bollongino, R., Burger, J., Powell, A., Mashkour, M., Vigne, J.-D., & Thomas, M. G. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss092 · Cited by 188 · see citing works
Genetic Diversity and Origin of Chinese Cattle Revealed by mtDNA D-Loop Sequence Variation
Lai, S.-J., Liu, Y.-P., Liu, Y.-X., Li, X.-W., & Yao, Y.-G. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2005.06.013 · Cited by 143 · see citing works
The Mosaic Genome of Indigenous African Cattle as a Unique Genetic Resource for African Pastoralism
Kim, K., Kwon, T., Dessie, T., Yoo, D., Mwai, O. A., Jang, J., Sung, S., Lee, S., Salim, B., Jung, J., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0694-2 · Cited by 140 · see citing works
Bonfiglio, S., Achilli, A., Olivieri, A., Negrini, R., Colli, L., Liotta, L., Ajmone-Marsan, P., Torroni, A., & Ferretti, L. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015760 · Cited by 113 · see citing works
Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1
Bonfiglio, S., Ginja, C., De Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S. H., Gama, L. T., Cattonaro, F., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038601 · Cited by 106 · see citing works
Evolution and Domestication of the Bovini Species
Zhang, K., Lenstra, J. A., Zhang, S., Liu, W., & Liu, J. (2020) · Animal Genetics · doi:10.1111/age.12974 · Cited by 82 · see citing works
Signatures of positive selection in African Butana and Kenana dairy zebu cattle
Bahbahani, H., Salim, B., Almathen, F., Al Enezi, F., Mwacharo, J. M., & Hanotte, O. (2018) · PLOS ONE · doi:10.1371/journal.pone.0190446 · Cited by 67 · see citing works
Miretti, M. M., Dunner, S., Naves, M., Contel, E. P., & Ferro, J. A. (2004) · Journal of Heredity · doi:10.1093/jhered/esh070 · Cited by 56 · see citing works
Gebrehiwot, N. Z., Strucken, E. M., Aliloo, H., Marshall, K., & Gibson, J. P. (2020) · BMC Genomics · doi:10.1186/s12864-020-07270-x · Cited by 50 · see citing works
Upadhyay, M., Bortoluzzi, C., Barbato, M., Ajmone‐Marsan, P., Colli, L., Ginja, C., Sonstegard, T. S., Bosse, M., Lenstra, J. A., Groenen, M. A. M., et al. (2019) · Evolutionary Applications · doi:10.1111/eva.12770 · Cited by 45 · see citing works
Pérez-Pardal, L., Sánchez-Gracia, A., Álvarez, I., Traoré, A., Ferraz, J. B. S., Fernández, I., Costa, V., Chen, S., Tapio, M., Cantet, R. J. C., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-36444-7 · Cited by 45 · see citing works
African Matrilineages in American Creole Cattle: Evidence of Two Independent Continental Sources
Lirón, J. P., Bravi, C. M., Mirol, P. M., Peral‐García, P., & Giovambattista, G. (2006) · Animal Genetics · doi:10.1111/j.1365-2052.2006.01452.x · Cited by 42 · see citing works
Mekonnen, Y. A., Gültas, M., Effa, K., Hanotte, O., & Schmitt, A. O. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.01095 · Cited by 37 · see citing works
Ancestral Matrilineages and Mitochondrial DNA Diversity of the Lidia Cattle Breed
Cortés, O., Tupac‐Yupanqui, I., Dunner, S., García‐Atance, M. A., García, D., Fernández, J., & Cañón, J. (2008) · Animal Genetics · doi:10.1111/j.1365-2052.2008.01782.x · Cited by 32 · see citing works
Genetics and Domestication: Important Questions for New Answers
Larson, G. (2011) · Current Anthropology · doi:10.1086/658401 · Cited by 28 · see citing works
Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle
Liu, Y., Xu, L., Yang, L., Zhao, G., Li, J., Liu, D., & Li, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.533052 · Cited by 27 · see citing works
Inference of Admixture Origins in Indigenous African Cattle
Kim, K., Kim, D., Hanotte, O., Lee, C., Kim, H., & Jeong, C. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad257 · Cited by 24 · see citing works
Liu, X., Li, Z., Yan, Y., Li, Y., Wu, H., Pei, J., Yan, P., Yang, R., Guo, X., & Lan, X. (2021) · Evolutionary Applications · doi:10.1111/eva.13168 · Cited by 23 · see citing works
- Authors
- Bradley, D. G., MacHugh, D. E., Cunningham, P., & Loftus, R. T.
- Affiliations
- Trinity College Dublin (IE)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 1996-05-14
- Volume
- 93
- Issue
- 10
- Pages
- 5131-5135
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC39419
- OpenAlex
- W1992674810
- Cited by
- 584
- References
- 1
- Citations by year
- 2026: 6 · 2025: 9 · 2024: 16 · 2023: 17 · 2022: 15 · 2021: 39 · 2020: 18 · 2019: 32 · 2018: 24 · 2017: 11 · 2016: 17 · 2015: 25 · 2014: 16 · 2013: 25 · 2012: 19
- FWCI
- 4.81
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Commission
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Keywords
- cattle domestication, cattle, Bos indicus, aurochs, mitochondrial DNA, D-loop, African cattle, European cattle, Indian cattle, population divergence, population growth, divergence time estimation
- MeSH terms
- Africa, Animals, Animals, Domestic, Base Sequence, Cattle, DNA, Mitochondrial, Europe, Haplotypes, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, RNA, Transfer, Pro, Sequence Homology, Nucleic Acid, Time Factors, Genetic Variation, DNA Primers, Evolution, Molecular
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review