Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia
Open accessAbstract
Cattle domestication and the complex histories of East Asian cattle breeds warrant further investigation. Through analysing the genomes of 49 modern breeds and eight East Asian ancient samples, worldwide cattle are consistently classified into five continental groups based on Y-chromosome haplotypes and autosomal variants. We find that East Asian cattle populations are mainly composed of three distinct ancestries, including an earlier East Asian taurine ancestry that reached China at least ~3.9 kya, a later introduced Eurasian taurine ancestry, and a novel Chinese indicine ancestry that diverged from Indian indicine approximately 36.6-49.6 kya. We also report historic introgression events that helped domestic cattle from southern China and the Tibetan Plateau achieve rapid adaptation by acquiring ~2.93% and ~1.22% of their genomes from banteng and yak, respectively. Our findings provide new insights into the evolutionary history of cattle and the importance of introgression in adaptation of cattle to new environmental challenges in East Asia.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The molecular divergence estimate strongly supports two independent domestication events involving distinct aurochs subspecies.
“strongly supporting the two independent domestication events involving distinct aurochs subspecies.”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results (Demographic history of East Asian cattle; page unavailable) estimate taurine–indicine divergence at 201–213 kya, and the Introduction describes two primary domestication centres. But the paper does not say that this molecular estimate strongly establishes independent domestication from distinct aurochs subspecies; its Discussion treats a possible contribution from differentiated wild indicine populations as hypothetical. (LLM, conf=0.84)
Experimental — accuracy not yet measuredMolecular divergence of taurine and indicine lineages occurred approximately 201,000-301,200 years ago.
“Molecular divergence of taurine and indicine (also referred to as zebu) lineages is estimated to have occurred at approximately 201,000–301,200 years ago [5,7,8,9,10], strongly supporting the two independent domestication events involving distinct aurochs subspecies.”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results section, “Demographic history of East Asian cattle” (page unavailable), estimates taurine–indicine divergence at approximately 201–213 thousand years ago and reports an earlier molecular-divergence range of 117–332 thousand years. It supports divergence around 201 thousand years ago, but not the claimed upper bound of 301,200 years. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe Y2 haplogroup is distributed across Eurasia and Africa, while Y2a sub-haplogroup is dominant in Eurasian cattle and Y2b sub-haplogroup is found at a higher proportion in Northeast Asian and Qinghai-Tibetan Plateau cattle.
“The Y2 haplogroup is distributed across Eurasia and Africa, whiel Y2a sub-haplogroup is dominant in Eurasian cattle and Y2b sub-haplogroup is found having a higher proportion in Northeast Asian and Qinghai-Tibetan Plateau cattle [9,34].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results (Paternal and maternal phylogenetic analyses) and Discussion report Y2a in Northwest Chinese and Central-South European cattle, and Y2b as predominant in Northeast Asian and Tibetan Plateau cattle. They do not establish that Y2a dominates Eurasian cattle generally or that Y2 is distributed in Africa; the African haplogroup mentioned in the Results is maternal T1, not Y2. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe divergence of Y3a from Y3b, as well as sub-haplogroups within indicine mitogenomes, occurred approximately 23,100-24,800 years ago, while South Asian indicine ancestry diverged from East Asian and African indicine ancestry approximately 10,300-40,100 and 11,800 years ago, respectively.
“The divergence of Y3a from Y3b, as well as sub-haplogroups within indicine mitogenomes, occurred approximately 23,100–24,800 years ago, while South Asian indicine ancestry diverged from East Asian and African indicine ancestry approximately 10,300–40,100 and 11,800 years ago, respectively [9,10].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredThe mtDNA I1 haplogroup and Y3b sub-haplogroup are widely distributed in India and other parts of the world, while Y3a sub-haplogroup predominates in southern China and Southeast Asia.
“The mtDNA I1 haplogroup and Y3b sub-haplogroup are widely distributed in India and other parts of the world, while Y3a sub-haplogroup predominates in southern China and Southeast Asia [6,9,36,37].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results section (Paternal and maternal phylogenetic analyses; page unavailable) says Y3a dominated cattle from South China and Y3b was mainly carried by three breeds of Indian origin. It identifies I1a within I1 in Chinese indicine cattle, but does not establish that I1 and Y3b are widely distributed in India and elsewhere, or that Y3a predominates in Southeast Asia. (LLM, conf=0.86)
Experimental — accuracy not yet measured
The autosomal genetic structure of modern cattle is primarily divided into six ancestries: European taurine, East Asian taurine, African taurine, South Asian or Indian indicine, East Asian or Chinese indicine, and African indicine ancestry.
“The autosomal genetic structure of modern cattle is primarily divided into six ancestries (Table 1): European taurine, East Asian taurine, African taurine, South Asian or Indian indicine, East Asian or Chinese indicine, and African indicine ancestry [9,10,31].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results section on autosomal population structure identifies European taurine, East Asian taurine, Chinese indicine, and Indian indicine ancestry, as the claim does. But it reports five ancestral components, not six: the fifth is Eurasian taurine, and African taurine and African indicine are not among the components it identifies. No page number is available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe introgression proportions of banteng, gaur, and yak ancestries into East Asian indicine or Tibetan taurine cattle ranged from 1.13% to 10.21%, 2.06% to 9.98%, and 0.05% to 2.94%, respectively.
“The introgression proportions of banteng (Bos javanicus), gaur (Bos gaurus), and yak (Bos mutus) ancestries into East Asian indicine or Tibetan taurine cattle ranged from 1.13% to 10.21%, 2.06% to 9.98%, and 0.05% to 2.94%, respectively [9,10].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Results section on yak introgression reports the claimed 0.05–2.94% range for nine Tibetan taurine cattle. But the Results section on B. javanicus introgression gives a banteng-ancestry range of 2.38–3.84%, not 1.13–10.21%. Our copy does not report the claimed gaur-ancestry range of 2.06–9.98%. No page numbers are available in the indexed passages. (LLM, conf=0.93)
Experimental — accuracy not yet measuredDuring the late Neolithic (4000-5000 years ago), taurine cattle were introduced to East Asia from West Asia, carrying T3 and the East Asian-specific T4 haplogroups.
“During the late Neolithic (4000–5000 years ago), taurine cattle were introduced to East Asia from West Asia, carrying T3 and the East Asian-specific T4 haplogroups [9,33,55,56,57].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
The Introduction (page unavailable) says archaeological evidence suggests taurine cattle may have been imported from West Asia during the late Neolithic, 5000–4000 years before present. The Results section on paternal and maternal phylogenetic analyses (page unavailable) finds T3 common in modern East Asian taurine cattle and T4 in one Tibetan individual, but does not establish that the cattle introduced in that period carried both haplogroups or that T4 is East Asian-specific. (LLM, conf=0.88)
Experimental — accuracy not yet measuredStudies based on Y-chromosome microsatellites or SNP markers classify modern cattle paternal origins into taurine Y1, Y2 (Y2a and Y2b), and indicine Y3 (Y3a and Y3b) haplogroups.
“Studies based on Y-chromosome microsatellites or SNP markers classify modern cattle paternal origins into taurine Y1, Y2 (Y2a and Y2b), and indicine Y3 (Y3a and Y3b) haplogroups [9,10].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
Tibetan and Northeast Asian cattle breeds share an East Asian taurine ancestry component, and the Y2b sub-haplogroup was likely maintained by geographical barriers.
“Tibetan and Northeast Asian cattle breeds share an East Asian taurine ancestry component, and the Y2b sub-haplogroup was likely maintained by geographical barriers [9].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
Eurasian taurine ancestry and the Y2a sub-haplogroup predominated in cattle from Northwest China and south-central Europe.
“In contrast, Eurasian taurine ancestry and the Y2a sub-haplogroup predominated in cattle from Northwest China and south-central Europe [9].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [9]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376 · see citing works
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss075 · Cited by 9,990 · see citing works
Fast model-based estimation of ancestry in unrelated individuals
Alexander, D. H., Novembre, J., & Lange, K. (2009) · Genome Research · doi:10.1101/gr.094052.109 · Cited by 9,898 · see citing works
Population Structure and Eigenanalysis
Patterson, N., Price, A. L., & Reich, D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020190 · Cited by 5,280 · see citing works
A draft sequence of the Neandertal genome
Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318 · see citing works
Clark, P. U., Dyke, A. S., Shakun, J. D., Carlson, A. E., Clark, J., Wohlfarth, B., Mitrovica, J. X., Hostetler, S. W., & McCabe, A. (2009) · Science · doi:10.1126/science.1172873 · Cited by 3,632 · see citing works
Browning, S. R., & Browning, B. L. (2007) · The American Journal of Human Genetics · doi:10.1086/521987 · Cited by 3,138 · see citing works
Ancient Admixture in Human History
Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848 · see citing works
Inference of population splits and mixtures from genome-wide allele frequency data
Pickrell, J. K., & Pritchard, J. K. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002967 · Cited by 2,731 · see citing works
Gutenkunst, R. N., Hernandez, R. D., Williamson, S. H., & Bustamante, C. D. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000695 · Cited by 1,906 · see citing works
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature · doi:10.1038/nature13408 · Cited by 1,208 · see citing works
Self-citationThe Molecular Receptive Ranges of Human TAS2R Bitter Taste Receptors
Meyerhof, W., Batram, C., Kühn, C., Brockhoff, A., Chudoba, E., Bufe, B., Appendino, G., & Behrens, M. (2009) · Chemical Senses · doi:10.1093/chemse/bjp092 · Cited by 1,141 · see citing works
Keane, T., Creevey, C. J., Pentony, M. M., Naughton, T. J., & Mclnerney, J. O. (2006) · BMC Evolutionary Biology · doi:10.1186/1471-2148-6-29 · Cited by 1,070 · see citing works
Inferring human population size and separation history from multiple genome sequences
Schiffels, S., & Durbin, R. M. (2014) · Nature Genetics · doi:10.1038/ng.3015 · Cited by 1,051 · see citing works
The yak genome and adaptation to life at high altitude
Qiu, Q., Zhang, G., Ma, T., Qian, W., Wang, J., Ye, Z., Cao, C., Hu, Q., Kim, J., Larkin, D. M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2343 · Cited by 971 · see citing works
Self-citationRFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference
Maples, B. K., Gravel, S., Kenny, E. E., & Bustamante, C. D. (2013) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.06.020 · Cited by 900 · see citing works
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
The Bovine HapMap Consortium, Gibbs, R. A., Taylor, J. F., Van Tassell, C. P., Barendse, W., Eversole, K. A., Gill, C. A., Green, R. D., Hamernik, D. L., Kappes, S. M., et al. (2009) · Science · doi:10.1126/science.1167936 · Cited by 868 · see citing works
Self-citationIL-37 is a fundamental inhibitor of innate immunity
Nold, M. F., Nold‐Petry, C. A., Zepp, J. A., Palmer, B. E., Bufler, P., & Dinarello, C. A. (2010) · Nature Immunology · doi:10.1038/ni.1944 · Cited by 850 · see citing works
Beall, C. M., Cavalleri, G. L., Deng, L., Elston, R. C., Gao, Y., Knight, J., Li, C., Li, J. C., Liang, Y., McCormack, M., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002443107 · Cited by 845 · see citing works
Self-citationEvidence for Two Independent Domestications of Cattle
Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M., & Cunningham, P. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.7.2757 · Cited by 812 · see citing works
Self-citationThe BPP program for species tree estimation and species delimitation
Yang, Z. (2015) · Current Zoology · doi:10.1093/czoolo/61.5.854 · Cited by 779 · see citing works
Agriculture facilitated permanent human occupation of the Tibetan Plateau after 3600 B.P.
Chen, F., Dong, G., Zhang, D., Liu, X. Y., Jia, X., An, C. B., Ma, M. M., Xie, Y., Barton, L., Ren, X. Y., et al. (2014) · Science · doi:10.1126/science.1259172 · Cited by 733 · see citing works
Genetic diversity in farm animals – a review
Groeneveld, L. F., Lenstra, J. A., Eding, H., Toro, M. Á., Scherf, B., Pilling, D., Negrini, R., Finlay, E. K., Jianlin, H., Groeneveld, E., et al. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2010.02038.x · Cited by 648 · see citing works
Genetic Evidence for Near-Eastern Origins of European Cattle
Troy, C. S., MacHugh, D. E., Bailey, J. F., Magee, D. A., Loftus, R. T., Cunningham, P., Chamberlain, A. T., Sykes, B. C., & Bradley, D. G. (2001) · Nature · doi:10.1038/35074088 · Cited by 627 · see citing works
Self-citationBigham, A., Bauchet, M., Pinto, D., Mao, X., Akey, J. M., Mei, R., Scherer, S. W., Julian, C. G., Wilson, M. J., López Herráez, D., et al. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001116 · Cited by 597 · see citing works
Mitochondrial diversity and the origins of African and European cattle
Bradley, D. G., MacHugh, D. E., Cunningham, P., & Loftus, R. T. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.10.5131 · Cited by 584 · see citing works
Self-citationEvidence for archaic adaptive introgression in humans
Racimo, F., Sankararaman, S., Nielsen, R., & Huerta-Sánchez, E. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3936 · Cited by 521 · see citing works
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Molina Alcalá, A., Sonstegard, T. S., Hanotte, O., Götherström, A., Seabury, C. M., Praharani, L., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004254 · Cited by 521 · see citing works
Self-citationAi, H., Fang, X., Yang, B. J., Huang, Z., Chen, H., Mao, L., Zhang, F., Zhang, L., Cui, L., He, W., et al. (2015) · Nature Genetics · doi:10.1038/ng.3199 · Cited by 374 · see citing works
Self-citationZhao, S., Zheng, P., Dong, S., Zhan, X., Wu, Q., Guo, X., Hu, Y., He, W., Zhang, S., Fan, W., et al. (2012) · Nature Genetics · doi:10.1038/ng.2494 · Cited by 349 · see citing works
Self-citationInterleukin 37 expression protects mice from colitis
McNamee, E. N., Masterson, J. C., Jedlicka, P., McManus, M. C., Grenz, A., Collins, C. B., Nold, M. F., Nold‐Petry, C. A., Bufler, P., Dinarello, C. A., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1111982108 · Cited by 320 · see citing works
Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle
Achilli, A., Olivieri, A., Pellecchia, M., Uboldi, C., Colli, L., Al-Zahery, N., Accetturo, M., Pala, M., Kashani, B. H., Perego, U. A., et al. (2008) · Current Biology · doi:10.1016/j.cub.2008.01.019 · Cited by 290 · see citing works
The Genome Landscape of Indigenous African Cattle
Kim, J., Hanotte, O., Mwai, O. A., Dessie, T., Bashir, S., Diallo, B., Agaba, M., Kim, K., Kwak, W., Sung, S., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1153-y · Cited by 271 · see citing works
The bronze age of Southeast Asia
(1997) · Choice Reviews Online · doi:10.5860/choice.34-4553 · Cited by 269 · see citing works
Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic
Chen, S., Lin, B.-Z., Baig, M., Mitra, B., Lopes, R. J., Santos, A. M., Magee, D. A., Azevedo, M., Tarroso, P., Sasazaki, S., et al. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msp213 · Cited by 248 · see citing works
Self-citationPark, S. D. E., Magee, D. A., McGettigan, P., Teasdale, M. D., Edwards, C. J., Lohan, A. J., Murphy, A., Braud, M., Donoghue, M. T. A., Liu, Y., et al. (2015) · Genome biology · doi:10.1186/s13059-015-0790-2 · Cited by 228 · see citing works
Self-citationGenomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens
Wang, M., Li, Y., Peng, M., Zhong, L., Wang, Z., Li, Q., Tu, X.-L., Dong, Y., Zhu, C., Wang, L., et al. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv071 · Cited by 222 · see citing works
New World Cattle Show Ancestry from Multiple Independent Domestication Events
McTavish, E. J., Decker, J. E., Schnabel, R. D., Taylor, J. F., & Hillis, D. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1303367110 · Cited by 218 · see citing works
Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe
Götherström, A., Anderung, C., Hellborg, L., Elburg, R., Smith, C. I., Bradley, D. G., & Ellegren, H. (2005) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2005.3243 · Cited by 208 · see citing works
Self-citationMoving agriculture onto the Tibetan plateau: the archaeobotanical evidence
Guedes, J. D., Lü, H., Li, Y., Spengler, R. N., Wu, X., & Aldenderfer, M. S. (2013) · Archaeological and Anthropological Sciences · doi:10.1007/s12520-013-0153-4 · Cited by 176 · see citing works
Taming the Past: Ancient DNA and the Study of Animal Domestication
MacHugh, D. E., Larson, G., & Orlando, L. (2016) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022516-022747 · Cited by 169 · see citing works
The first steps of animal domestication : new archaeozoological approaches
Vigne, J., Peters, J., & Helmer, D. (2005) · Cited by 152 · see citing works
Genetic Diversity and Origin of Chinese Cattle Revealed by mtDNA D-Loop Sequence Variation
Lai, S.-J., Liu, Y.-P., Liu, Y.-X., Li, X.-W., & Yao, Y.-G. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2005.06.013 · Cited by 143 · see citing works
Međugorac, I., Graf, A., Grohs, C., Rothammer, S., Zagdsuren, Y., Александровна, Г. Е., Zinovieva, N. A., Barbieri, J., Seichter, D., Ruß, I., et al. (2017) · Nature Genetics · doi:10.1038/ng.3775 · Cited by 128 · see citing works
Species Composition and Environmental Adaptation of Indigenous Chinese Cattle
Gao, Y., Gautier, M., Ding, X., Zhang, H., Wang, Y., Wang, X., Faruque, M. O., Li, J., Ye, S., Gou, X., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-16438-7 · Cited by 112 · see citing works
Self-citationMorphological and genetic evidence for early Holocene cattle management in northeastern China
Zhang, H., Paijmans, J. L. A., Chang, F., Wu, X., Chen, G., Lei, C., Yang, X., Wei, Z., Bradley, D. G., Orlando, L., et al. (2013) · Nature Communications · doi:10.1038/ncomms3755 · Cited by 109 · see citing works
Self-citationChang, T.-C., Yang, Y., Retzel, E. F., & Liu, W. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1221104110 · Cited by 102 · see citing works
Origin and Phylogeographical Structure of Chinese Cattle
Lei, C. Z., Chen, H., Zhang, H. C., Cai, X., Liu, R. Y., Luo, L. Y., Wang, C. F., Zhang, W., Ge, Q. L., Zhang, R. F., et al. (2006) · Animal Genetics · doi:10.1111/j.1365-2052.2006.01524.x · Cited by 98 · see citing works
Self-citationThe Origins of Chinese Domestic Cattle as Revealed by Ancient DNA Analysis
Cai, D., Sun, Y., Tang, Z., Hu, S., Li, W., Zhao, X., Xiang, H., & Zhou, H. (2014) · Journal of Archaeological Science · doi:10.1016/j.jas.2013.09.003 · Cited by 85 · see citing works
Self-citationBrunson, K., Zhao, X., He, N., Dai, X., Rodrigues, A. T., & Yang, D. Y. (2016) · Journal of Archaeological Science · doi:10.1016/j.jas.2016.08.008 · Cited by 64 · see citing works
Deciphering the Wisent Demographic and Adaptive Histories from Individual Whole-Genome Sequences
Gautier, M., Moazami‐Goudarzi, K., Levéziel, H. H., Parrinello, H., Grohs, C., Rialle, S., Kowalczyk, R., & Flori, L. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw144 · Cited by 59 · see citing works
Liu, G. E., Matukumalli, L. K., Sonstegard, T. S., Shade, L. L., & Tassell, C. P. V. (2006) · BMC Genomics · doi:10.1186/1471-2164-7-140 · Cited by 41 · see citing works
Book Review: The First Steps of Animal Domestication
Hesse, B. C. (2006) · Journal of Ethnobiology · doi:10.2993/0278-0771(2006)26[171:tfsoad]2.0.co;2 · Cited by 41 · see citing works
History and population structure of a closed strain of Japanese Black Cattle
Mukai, F., Tsuji, S., Fukazawa, K., Ohtagaki, S., & Nambu, Y. (1989) · Journal of Animal Breeding and Genetics · doi:10.1111/j.1439-0388.1989.tb00239.x · Cited by 40 · see citing works
Paternal Origins of Chinese Cattle
Li, R., Zhang, X. M., Campana, M. G., Huang, J. P., Chang, Z. H., Qi, X. B., Shi, H., Su, B., Zhang, R. F., Lan, X. Y., et al. (2013) · Animal Genetics · doi:10.1111/age.12022 · Cited by 40 · see citing works
Self-citationMolecular biology of thermoregulation
Sieck, G. C. (2002) · Journal of Applied Physiology · doi:10.1152/japplphysiol.00003.2002 · Cited by 38 · see citing works
Zooarchaeological and Genetic Evidence for the Origins of Domestic Cattle in Ancient China
Lu, P., Brunson, K., Yuan, J., & Li, Z. (2017) · Asian perspectives · doi:10.1353/asi.2017.0003 · Cited by 28 · see citing works
Hassanin, A., & Ropiquet, A. (2007) · Journal of Zoology · doi:10.1111/j.1469-7998.2006.00272.x · Cited by 24 · see citing works
Shimao and Erlitou: new perspectives on the origins of the bronze industry in central China
Rawson, J. (2017) · Antiquity · doi:10.15184/aqy.2016.234 · Cited by 23 · see citing works
Lawler, A. J. (2009) · Science · doi:10.1126/science.325_940 · Cited by 16 · see citing works
Flagged first, then by citations
Research works printed but not linked: 2
- [1]National Bureau of Statistics. China Statistical Yearbook 2016 (China Statistics Press, Beijing, 2016).
- [2]Vigne JD Peters J Helmer D The First Steps of Animal Domestication 2005 Oxford Oxbow Books
Cited by
Sorted by citations
863 genomes reveal the origin and domestication of chicken
Wang, M.-S., Thakur, M., Peng, M.-S., Jiang, Y., Frantz, L. A. F., Li, M., Zhang, J.-J., Wang, S., Peters, J., Otecko, N. O., et al. (2020) · Cell Research · doi:10.1038/s41422-020-0349-y · Cited by 286 · see citing works
Self-citationWidespread introgression across a phylogeny of 155 Drosophila genomes
Suvorov, A., Kim, B. Y., Wang, J., Armstrong, E. E., Peede, D., D’Agostino, E. R. R., Price, D. K., Waddell, P. J., Lang, M., Courtier‐Orgogozo, V., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.10.052 · Cited by 275 · see citing works
Ancient Cattle Genomics, Origins, and Rapid Turnover in the Fertile Crescent
Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Maisano Delser, P., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., et al. (2019) · Science · doi:10.1126/science.aav1002 · Cited by 227 · see citing works
Self-citationHu, X., Yang, J. H., Xie, X.-L., Lv, F., Cao, Y.-H., Li, W., Liu, M., Wang, Y., Li, J., Liu, Y., et al. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy208 · Cited by 188 · see citing works
Self-citationThe origin of domestication genes in goats
Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., et al. (2020) · Science Advances · doi:10.1126/sciadv.aaz5216 · Cited by 184 · see citing works
Self-citationLv, F., Cao, Y.-H., Liu, G., Luo, L.-Y., Lu, R., Liu, M., Li, W., Zhou, P., Wang, X., Shen, M., et al. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab353 · Cited by 183 · see citing works
Self-citationThe Mosaic Genome of Indigenous African Cattle as a Unique Genetic Resource for African Pastoralism
Kim, K., Kwon, T., Dessie, T., Yoo, D., Mwai, O. A., Jang, J., Sung, S., Lee, S., Salim, B., Jung, J., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0694-2 · Cited by 140 · see citing works
Genomic clues of the evolutionary history of <i>Bos indicus</i> cattle
Utsunomiya, Y. T., Milanesi, M., Fortes, M. R. S., Porto‐Neto, L. R., Utsunomiya, A. T. H., Silva, M. V. G. B., Garcia, J. F., & Ajmone‐Marsan, P. (2019) · Animal Genetics · doi:10.1111/age.12836 · Cited by 128 · see citing works
Cao, Y.-H., Xu, S., Shen, M., Chen, Z., Gao, L., Lv, F., Xie, X.-L., Wang, X., Yang, H., Liu, C., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa236 · Cited by 109 · see citing works
Self-citationUnlocking the origins and biology of domestic animals using ancient DNA and paleogenomics
McHugo, G. P., Dover, M. J., & MacHugh, D. E. (2019) · BMC Biology · doi:10.1186/s12915-019-0724-7 · Cited by 95 · see citing works
Weldenegodguad, M., Popov, R. G., Pokharel, K., Ammosov, I., Ming, Y., Ivanova, Z., & Kantanen, J. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2018.00728 · Cited by 95 · see citing works
Xia, X., Zhang, S., Zhang, H., Zhang, Z., Chen, N., Li, Z., HongXia, S., Liu, X., Lyu, S., Wang, X., et al. (2021) · BMC Genomics · doi:10.1186/s12864-020-07340-0 · Cited by 97 · see citing works
Self-citationZhou, Y., Yang, L., Han, X., Han, J., Hu, Y., Li, F., Xia, H., Peng, L., Boschiero, C., Rosen, B. D., et al. (2022) · Genome Research · doi:10.1101/gr.276550.122 · Cited by 89 · see citing works
Self-citationChen, Z., Xu, Y., Xie, X.-L., Wang, D., Aguilar‐Gómez, D., Liu, G., Li, X., Esmailizadeh, A., Rezaei, V., Kantanen, J., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-02817-4 · Cited by 89 · see citing works
The transcriptomic landscape of yaks reveals molecular pathways for high altitude adaptation
Qi, X., Zhang, Q., He, Y., Yang, L., Zhang, X., Shi, P., Yang, L., Liu, Z., Zhang, F., Liu, F., et al. (2018) · Genome Biology and Evolution · doi:10.1093/gbe/evy264 · Cited by 87 · see citing works
Self-citationChen, N., Xia, X., Hanif, Q., Zhang, F., Dang, R., Huang, B., Lyu, Y., Luo, X., Zhang, H., Yan, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43626-z · Cited by 83 · see citing works
Self-citationEvolution and Domestication of the Bovini Species
Zhang, K., Lenstra, J. A., Zhang, S., Liu, W., & Liu, J. (2020) · Animal Genetics · doi:10.1111/age.12974 · Cited by 82 · see citing works
Leonard, A. S., Crysnanto, D., Fang, Z., Heaton, M. P., Ley, B. L. V., Herrera, C., Bollwein, H., Bickhart, D. M., Kuhn, K. L., Smith, T. P. L., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-30680-2 · Cited by 76 · see citing works
Adaptive introgression from indicine cattle into white cattle breeds from Central Italy
Barbato, M., Hailer, F., Upadhyay, M. R., Corvo, M. D., Colli, L., Negrini, R., Kim, E.-S., Crooijmans, R. P. M. A., Sonstegard, T. S., & Ajmone‐Marsan, P. (2020) · Scientific Reports · doi:10.1038/s41598-020-57880-4 · Cited by 77 · see citing works
BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures
Chen, N., Fu, W., Zhao, J., Shen, J., Chen, Q., Zheng, Z., Chen, H., Sonstegard, T. S., Lei, C., & Jiang, Y. (2020) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2019.03.007 · Cited by 78 · see citing works
Self-citationWang, W., Zhang, X., Zhou, X., Zhang, Y., La, Y., Zhang, Y., Li, C., Zhao, Y., Li, F., Liu, B., et al. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00300 · Cited by 73 · see citing works
Self-citationDiverging patterns of introgression from Schistosoma bovis across S. haematobium African lineages
Rey, O., Toulza, È., Chaparro, C., Allienne, J., Kincaid-Smith, J., Mathieu‐Bégné, E., Allan, F., Rollinson, D., Webster, B. L., & Boissier, J. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009313 · Cited by 66 · see citing works
Phylogenomics, biogeography, and adaptive radiation of grapes
Ma, Z., Wen, J., Ickert‐Bond, S. M., Nie, Z., Chen, L.-Q., & Liu, X. (2018) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2018.08.021 · Cited by 64 · see citing works
Self-citationBuggiotti, L., Yurchenko, A. A., Yudin, N. S., Jagt, C. J. V., Vorobieva, N. V., Kusliy, M. A., Vasiliev, S. K., Rodionov, A. N., Boronetskaya, O. I., Zinovieva, N. A., et al. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab078 · Cited by 63 · see citing works
Evolutionary origin of genomic structural variations in domestic yaks
Liu, X., Liu, W., Lenstra, J. A., Zheng, Z., Wu, X., Jiao, Y., Li, B., Yang, Y. P., Qiu, Q., Liu, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41220-x · Cited by 63 · see citing works
Self-citationAn atlas of CNV maps in cattle, goat and sheep
Huang, Y., Li, Y., Wang, X., Yu, J., Cai, Y., Zheng, Z., Li, R., Zhang, S., Chen, N., Nanaei, H. A., et al. (2021) · Science China Life Sciences · doi:10.1007/s11427-020-1850-x · Cited by 61 · see citing works
Self-citationAncient Genomes Reveal the Evolutionary History and Origin of Cashmere-Producing Goats in China
Cai, Y., Fu, W., Cai, D., Heller, R., Zheng, Z., Wen, J., Li, H., Wang, X., Alshawi, A., Sun, Z., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa103 · Cited by 60 · see citing works
Self-citationGenomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan
Iqbal, N., Liu, X., Yang, T., Huang, Z., Hanif, Q., Asif, M., Khan, Q. M., & Mansoor, S. (2019) · PLoS ONE · doi:10.1371/journal.pone.0215065 · Cited by 56 · see citing works
Li, C., Wu, Y., Chen, B., Cai, Y., Guo, J., Leonard, A. S., Kalds, P., Zhou, S., Zhang, J., Zhou, P., et al. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac253 · Cited by 59 · see citing works
Self-citationYak Domestication: A Review of Linguistic, Archaeological, and Genetic Evidence
Jacques, G., Guedes, J. D., & Zhang, S. (2021) · Ethnobiology Letters · doi:10.14237/ebl.12.1.2021.1755 · Cited by 54 · see citing works
Xia, X., Zhang, F., Li, S., Luo, X., Peng, L., Dong, Z., Pausch, H., Leonard, A. S., Crysnanto, D., Wang, S., et al. (2023) · Genome biology · doi:10.1186/s13059-023-03052-2 · Cited by 53 · see citing works
Self-citationWhole Genome Scan and Selection Signatures for Climate Adaption in Yanbian Cattle
Shen, J., Hanif, Q., Cao, Y., Yu, Y., Lei, C., Zhang, G., & Zhao, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00094 · Cited by 53 · see citing works
Self-citationChen, N., Ren, L., Du, L., Hou, J., Mullin, V. E., Wu, D., Zhao, X., Li, C., Huang, J.-H., Qi, X., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2011696117 · Cited by 51 · see citing works
Self-citationZhang, S., Yao, Z., Li, X., Zhang, Z., Liu, X., Yang, P., Chen, N., Xia, X., Lyu, S., Shi, Q., et al. (2022) · BMC Genomics · doi:10.1186/s12864-022-08645-y · Cited by 51 · see citing works
Self-citationRecent Selection and Introgression Facilitated High-Altitude Adaptation in Cattle
Lyu, Y., Wang, F., Cheng, H., Han, J., Dang, R., Xia, X., Wang, H., Zhong, J., Lenstra, J. A., Zhang, H., et al. (2024) · Science Bulletin · doi:10.1016/j.scib.2024.05.030 · Cited by 50 · see citing works
Self-citationGebrehiwot, N. Z., Strucken, E. M., Aliloo, H., Marshall, K., & Gibson, J. P. (2020) · BMC Genomics · doi:10.1186/s12864-020-07270-x · Cited by 50 · see citing works
Comprehensive analysis of the mitochondrial <scp>DNA</scp> diversity in Chinese cattle
Xia, X., Qu, K., Zhang, G., Jia, Y., Ma, Z., Zhao, X., Huang, Y., Chen, H., Huang, B., & Lei, C. (2019) · Animal Genetics · doi:10.1111/age.12749 · Cited by 48 · see citing works
Self-citationPérez-Pardal, L., Sánchez-Gracia, A., Álvarez, I., Traoré, A., Ferraz, J. B. S., Fernández, I., Costa, V., Chen, S., Tapio, M., Cantet, R. J. C., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-36444-7 · Cited by 45 · see citing works
Paleogenomics of Animal Domestication
Irving-Pease, E. K., Ryan, H., Jamieson, A., Dimopoulos, E. A., Larson, G., & Frantz, L. (2018) · Population genomics · doi:10.1007/13836_2018_55 · Cited by 49 · see citing works
Global dispersal and adaptive evolution of domestic cattle: a genomic perspective
Xia, X., Qu, K., Wang, Y., Sinding, M. S., Wang, F., Hanif, Q., Ahmed, Z., Lenstra, J. A., Han, J., Lei, C., et al. (2023) · Stress Biology · doi:10.1007/s44154-023-00085-2 · Cited by 48 · see citing works
Self-citationDai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., et al. (2023) · Genome Research · doi:10.1101/gr.277481.122 · Cited by 43 · see citing works
Self-citationNaval-Sánchez, M., Porto-Neto, L. R., Cardoso, D. F., Hayes, B. J., Daetwyler, H. D., Kijas, J., & Reverter, A. (2020) · Genetics Selection Evolution · doi:10.1186/s12711-020-00546-6 · Cited by 43 · see citing works
Ward, J. A., McHugo, G. P., Dover, M. J., Hall, T. J., Ng’ang’a, S. I., Sonstegard, T. S., Bradley, D. G., Frantz, L., Salter‐Townshend, M., & MacHugh, D. E. (2022) · iScience · doi:10.1016/j.isci.2022.104672 · Cited by 45 · see citing works
Self-citationGenome analyses revealed genetic admixture and selection signatures in Bos indicus
Dixit, S. P., Bhatia, A. K., Ganguly, I., Singh, S., Dash, S., Sharma, A., Anandkumar, N., Dang, A. K., & Jayakumar, S. (2021) · Scientific Reports · doi:10.1038/s41598-021-01144-2 · Cited by 43 · see citing works
Zhang, Y., Hu, Y., Wang, X., Jiang, Q., Zhao, H., Wang, J., Ju, Z., Yang, L., Gao, Y., Wei, X., et al. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2019.01404 · Cited by 42 · see citing works
Genomic analyses reveal distinct genetic architectures and selective pressures in buffaloes
Sun, T., Shen, J., Achilli, A., Chen, N., Chen, Q., Dang, R., Zheng, Z., Zhang, H., Zhang, X., Wang, S., et al. (2020) · GigaScience · doi:10.1093/gigascience/giz166 · Cited by 43 · see citing works
Self-citationEvidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau
Chen, N., Zhang, Z., Hou, J., Chen, J., Gao, X., Tang, L., Wangdue, S., Zhang, X., Sinding, M. S., Liu, X., et al. (2023) · Science Advances · doi:10.1126/sciadv.adi6857 · Cited by 41 · see citing works
Self-citationGenome-Wide SNP Discovery in Indigenous Cattle Breeds of South Africa
Zwane, A. A., Schnabel, R. D., Hoff, J. L., Choudhury, A., Makgahlela, M. L., Maiwashe, A., van Marle-Köster, E., & Taylor, J. F. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00273 · Cited by 41 · see citing works
Čubrić-Ćurik, V., Novosel, D., Brajković, V., Rota‐Stabelli, O., Krebs, S., Sölkner, J., Šalamon, D., Ristov, S., Berger, B., Trivizaki, S., et al. (2021) · Evolutionary Applications · doi:10.1111/eva.13315 · Cited by 40 · see citing works
Wang, Y., Huang, J., Li, E., Xu, S., Zhan, Z., Zhang, X., Yang, Z., Guo, F., Liu, K., Liu, D., et al. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.813177 · Cited by 40 · see citing works
Self-citationZhu, M., Yang, Y., Yang, H., Zhao, Z., Zhang, H., Blair, H. T., Zheng, W., Wang, M., Fang, C., Yu, Q., et al. (2023) · BMC Genomics · doi:10.1186/s12864-023-09479-y · Cited by 37 · see citing works
Self-citationChai, Z., Xin, J., Zhang, C., Dawayangla, Luosang, Zhang, Q., Pingcuozhandui, Li, C., Zhu, Y., Cao, H., et al. (2020) · BMC Evolutionary Biology · doi:10.1186/s12862-020-01702-8 · Cited by 37 · see citing works
Self-citationLiu, H., Zhou, J., Degen, A. A., Liu, H., Cao, X., Hao, L., Shang, Z., Ran, T., & Long, R. (2022) · Animal nutrition · doi:10.1016/j.aninu.2022.07.015 · Cited by 37 · see citing works
Cheng, H., Zhang, Z., Wen, J., Lenstra, J. A., Heller, R., Cai, Y., Guo, Y., Li, M., Li, R., Li, W., et al. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1010615 · Cited by 37 · see citing works
Self-citationZhang, D., 兰州大学草地农业科技学院, 草., Zhang, X., Li, F., Yuan, L., Li, X., Zhang, Y., Zhao, Y., Zhao, L.-M., Wang, J.-H., et al. (2022) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2022.124 · Cited by 36 · see citing works
Self-citationBarrera‐Redondo, J., Piñero, D., & Eguiarte, L. E. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00742 · Cited by 35 · see citing works
Ruminant-specific retrotransposons shape regulatory evolution of bovine immunityPreprint
Kelly, C. J., Chitko-McKown, C. G., & Chuong, E. B. (2022) · Genome Research · doi:10.1101/gr.276241.121 · Cited by 35 · see citing works
Genetic diversity of Chinese cattle revealed by Y‐ SNP and Y‐ STR markers
Xia, X., Yao, Y., Li, C., Zhang, F., Qu, K., Chen, H., Huang, B., & Lei, C. (2018) · Animal Genetics · doi:10.1111/age.12742 · Cited by 34 · see citing works
Self-citationWhole‐genome resequencing reveals diversity, global and local ancestry proportions in Yunling cattle
Chen, Q., Zhan, J., Shen, J., Qu, K., Hanif, Q., Liu, J., Zhang, J., Chen, N., Chen, H., Huang, B., et al. (2020) · Journal of Animal Breeding and Genetics · doi:10.1111/jbg.12479 · Cited by 34 · see citing works
Self-citationTrajectory of livestock genomics in South Asia: A comprehensive review
Panigrahi, M., Kumar, H., Saravanan, K. A., Rajawat, D., Nayak, S. S., Ghildiyal, K., Kaisa, K., Parida, S., Bhushan, B., & Dutt, T. (2022) · Gene · doi:10.1016/j.gene.2022.146808 · Cited by 35 · see citing works
The Genomic Natural History of the Aurochs
Rossi, C., Sinding, M.-H. S., Mullin, V. E., Scheu, A., Erven, J. A. M., Verdugo, M. P., Daly, K. G., Ciucani, M. M., Mattiangeli, V., Teasdale, M. D., et al. (2024) · Nature · doi:10.1038/s41586-024-08112-6 · Cited by 32 · see citing works
Self-citationGebrehiwot, N. Z., Strucken, E. M., Marshall, K., Aliloo, H., & Gibson, J. P. (2021) · Genetics Selection Evolution · doi:10.1186/s12711-021-00615-4 · Cited by 33 · see citing works
Nanaei, H. A., 西北农林科技大学动物科技学院, 陕. 杨. 7., Cai, Y., Alshawi, A., Wen, J., Hussain, T., Fu, W., Xu, N., Essa, A., Lenstra, J. A., et al. (2022) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2022.242 · Cited by 36 · see citing works
Self-citationAdmixture in Mammals and How to Understand Its Functional Implications
Fontsere, C., de Manuel, M., Marquès‐Bonet, T., & Kuhlwilm, M. (2019) · BioEssays · doi:10.1002/bies.201900123 · Cited by 32 · see citing works
Cheng, J., Zhao, H., Chen, N., Cao, X., Hanif, Q., Pi, L., Hu, L., Chaogetu, B., Huang, Y., Lan, X., et al. (2020) · BMC Genomics · doi:10.1186/s12864-020-06925-z · Cited by 32 · see citing works
Self-citationSenczuk, G., Guerra, L., Mastrangelo, S., Campobasso, C., Kaouadji, Z., Meghelli, I., Marletta, D., Kusza, S., Karslı, T., Gaouar, S. B. S., et al. (2020) · Genes · doi:10.3390/genes11080932 · Cited by 34 · see citing works
Abdelmanova, A. S., Kharzinova, V. R., Volkova, V. V., Mishina, A. I., Dotsev, A. V., Sermyagin, А. А., Boronetskaya, O., Petrikeeva, L. V., Chinarov, R. Y., Brem, G., et al. (2020) · Genes · doi:10.3390/genes11080940 · Cited by 32 · see citing works
Xia, X., Achilli, A., Lenstra, J. A., Tong, B., Ma, Y., Huang, Y., Han, J., Sun, Z., Chen, H., Lei, C., et al. (2021) · Heredity · doi:10.1038/s41437-021-00428-7 · Cited by 33 · see citing works
Self-citationHypoxia Inducible Factor pathway proteins in high-altitude mammals
Lee, F. S. (2023) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2023.11.002 · Cited by 31 · see citing works
Foley, N. M., Harris, A. J., Bredemeyer, K. R., Ruedi, M., Puechmaille, S. J., Teeling, E. C., Criscitiello, M. F., & Murphy, W. J. (2024) · Cell Genomics · doi:10.1016/j.xgen.2023.100482 · Cited by 31 · see citing works
Abundant Genetic Diversity of Yunling Cattle Based on Mitochondrial Genome
Xia, X., Qu, K., Li, F., Jia, P., Chen, Q., Chen, N., Zhang, J., Chen, H., Huang, B., & Lei, C. (2019) · Animals · doi:10.3390/ani9090641 · Cited by 32 · see citing works
Self-citationJiang, F., Lin, R., Xiao, C., Xie, T., Jiang, Y., Chen, J., Ni, P., Sung, W.-K. K., Han, J., Du, X., et al. (2021) · Genetics Selection Evolution · doi:10.1186/s12711-021-00627-0 · Cited by 32 · see citing works
Self-citationProfiling the immune epigenome across global cattle breeds
Powell, J., Talenti, A., Fisch, A., Hemmink, J. D., Paxton, E. A., Toye, P. G., Santos, I. K. F. D. M., Ferreira, B. R., Connelley, T., Morrison, L. J., et al. (2023) · Genome biology · doi:10.1186/s13059-023-02964-3 · Cited by 30 · see citing works
Xu, L., Zhu, B., Wang, Z., Xu, L., Liu, Y., Chen, Y., Zhang, L., Gao, X., Gao, H., Zhang, S., et al. (2019) · Animals · doi:10.3390/ani9030083 · Cited by 30 · see citing works
Self-citationXu, S., Akhatayeva, Z., Liu, J., Feng, X., Yu, Y., Badaoui, B., Esmailizadeh, A., Kantanen, J., Amills, M., Lenstra, J. A., et al. (2024) · Science China Life Sciences · doi:10.1007/s11427-024-2744-4 · Cited by 29 · see citing works
A SNP in PLAG1 is associated with body height trait in Chinese cattle
Hou, J., Qu, K., Jia, P., Hanif, Q., Zhang, J., Chen, N., Dang, R., Chen, H., Huang, B., & Lei, C. (2019) · Animal Genetics · doi:10.1111/age.12872 · Cited by 29 · see citing works
Self-citationAssociation of HSF1 Genetic Variation with Heat Tolerance in Chinese Cattle
Rong, Y., Zeng, M., Guan, X., Qu, K., Liu, J., Zhang, J., Chen, H., Huang, B., & Lei, C. (2019) · Animals · doi:10.3390/ani9121027 · Cited by 32 · see citing works
Self-citationPRLH and SOD 1 gene variations associated with heat tolerance in Chinese cattle
Zeng, L., Chen, N., Ning, Q., Yao, Y., Chen, H., Dang, R., Zhang, H., & Lei, C. (2018) · Animal Genetics · doi:10.1111/age.12702 · Cited by 29 · see citing works
Self-citationBarbato, M., Reichel, M. P., Passamonti, M. M., Low, W. Y., Colli, L., Tearle, R. G., Williams, J. L., & Ajmone‐Marsan, P. (2020) · PLoS ONE · doi:10.1371/journal.pone.0231162 · Cited by 27 · see citing works
Origins, timing and introgression of domestic geese revealed by whole genome data
Wen, J., Li, H., Wang, H., Yu, J., Zhu, T., Zhang, J., Li, X., Jiang, Z., Ning, Z., & Qu, L. (2023) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-022-00826-9 · Cited by 28 · see citing works
Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle
Liu, Y., Xu, L., Yang, L., Zhao, G., Li, J., Liu, D., & Li, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.533052 · Cited by 27 · see citing works
Self-citationHuang, N., Zhao, L., Wang, J., Jiang, Q., Ju, Z., Wang, X., Yang, C., Gao, Y., Wei, X., Zhang, Y., et al. (2023) · Journal of Animal Science · doi:10.1093/jas/skad006 · Cited by 26 · see citing works
Felkel, S., Wallner, B., Battsetseg, C., Yadamsuren, A., Faye, B., Brem, G., Walzer, C., & Burger, P. A. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00423 · Cited by 26 · see citing works
Jiang, L., Kon, T., Chen, C., Ichikawa, R., Zheng, Q., Pei, L., Takemura, I., Nsobi, L. H., Tabata, H., Pan, H., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-96896-2 · Cited by 26 · see citing works
Nijman, I. J., Rosen, B. D., Bardou, P., Faraut, T., Cumer, T., Daly, K. G., Zheng, Z., Cai, Y., Nanaei, H. A., Kul, B. Ç., et al. (2022) · Molecular Ecology · doi:10.1111/mec.16579 · Cited by 26 · see citing works
Self-citationLiu, H., Li, Z., Pei, C., Degen, A. A., Hao, L., Cao, X., Liu, H., Zhou, J., & Long, R. (2022) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2022.115395 · Cited by 26 · see citing works
Comparative analysis of carcass traits and meat quality in indigenous Chinese cattle breeds
Ge, F., Li, J., Gao, H., Wang, X., Zhang, X., Gao, H., Zhang, L., Xu, L., Gao, X., Zhu, B., et al. (2023) · Journal of Food Composition and Analysis · doi:10.1016/j.jfca.2023.105645 · Cited by 25 · see citing works
Self-citationZhou, Q., Karunarathne, P., Li, L., Chen, C., Opgenoorth, L., Heer, K., VENDRAMIN, G. G., Piotti, A., Николаевна, Н. Е., Lascoux, M., et al. (2024) · Molecular Ecology · doi:10.1111/mec.17495 · Cited by 25 · see citing works
Genomic insights into ruminant evolution: from past to future prospects
Wang, B., Chen, L., & Wang, W. (2019) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2019.061 · Cited by 25 · see citing works
Genetic Diversity and Selective Signature in Dabieshan Cattle Revealed by Whole-Genome Resequencing
Guan, X., Zhao, S., Xiang, W., Jin, H., Chen, N., Lei, C., Jia, Y., & Xu, L. (2022) · Biology · doi:10.3390/biology11091327 · Cited by 25 · see citing works
Self-citationLi, G., Luo, J., Wang, F., Xu, D., Ahmed, Z., Chen, S., Li, R., & Ma, Z. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2022.1034094 · Cited by 25 · see citing works
Self-citationGinja, C., Guimarães, S. M. F., da Fonseca, R. R., Rasteiro, R., Rodríguez-Varela, R., Simões, L. G., Sarmento, C. D., Belarte, M. C., Kallala, N., Torres, J. R., et al. (2023) · iScience · doi:10.1016/j.isci.2023.107196 · Cited by 27 · see citing works
The evolution of contemporary livestock species: Insights from mitochondrial genome
Jain, K., Panigrahi, M., Nayak, S. S., Rajawat, D., Sharma, A., Sahoo, S. P., Bhushan, B., & Dutt, T. (2024) · Gene · doi:10.1016/j.gene.2024.148728 · Cited by 25 · see citing works
Four Novel SNPs of MYO1A Gene Associated with Heat-Tolerance in Chinese Cattle
Jia, P., Cai, C., Qu, K., Chen, N., Jia, Y., Hanif, Q., Liu, J., Zhang, J., Chen, H., Huang, B., et al. (2019) · Animals · doi:10.3390/ani9110964 · Cited by 25 · see citing works
Self-citationInference of Admixture Origins in Indigenous African Cattle
Kim, K., Kim, D., Hanotte, O., Lee, C., Kim, H., & Jeong, C. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad257 · Cited by 24 · see citing works
Liu, X., Li, Z., Yan, Y., Li, Y., Wu, H., Pei, J., Yan, P., Yang, R., Guo, X., & Lan, X. (2021) · Evolutionary Applications · doi:10.1111/eva.13168 · Cited by 23 · see citing works
Self-citationWhole genome analyses revealed genomic difference between European taurine and East Asian taurine
Chen, Q., Shen, J., Hanif, Q., Chen, N., Huang, Y., Dang, R., Lan, X., Chen, H., & Lei, C. (2020) · Journal of Animal Breeding and Genetics · doi:10.1111/jbg.12501 · Cited by 23 · see citing works
Self-citationWang, X., Ju, Z., Jiang, Q., Zhong, J., Liu, C., Wang, J., Hoff, J. L., Schnabel, R. D., Zhao, H., Gao, Y., et al. (2021) · Genomics · doi:10.1016/j.ygeno.2021.03.023 · Cited by 23 · see citing works
Ma, X., Cheng, H., Liu, Y., Sun, L., Chen, N., Jiang, F., You, W., Yang, Z., Zhang, B., Song, E., et al. (2022) · Animals · doi:10.3390/ani12050665 · Cited by 23 · see citing works
Self-citationWhole genome sequencing of simmental cattle for SNP and CNV discovery
Sun, T., Pei, S., Liu, Y., Hanif, Q., Xu, H., Chen, N., Lei, C., & Yue, X. (2023) · BMC Genomics · doi:10.1186/s12864-023-09248-x · Cited by 23 · see citing works
Self-citation
- Authors
- Chen, N., Cai, Y., Chen, Q., Li, R., Wang, K., Huang, Y., Hu, S., Huang, S., Zhang, H., Zheng, Z., Song, W., Ma, Z., Ma, Y., Dang, R., Zhang, Z., Xu, L., Jia, Y., Liu, S., Yue, X., Deng, W., Zhang, X., Sun, Z., Lan, X., Han, J., Chen, H., Bradley, D. G., Jiang, Y., & Lei, C.
- Affiliations
- Northwest A&F University (CN)
- Northwestern Polytechnical University (CN)
- Yunnan University (CN)
- Qinghai University (CN)
- Ningxia University (CN)
- Henan Academy of Agricultural Sciences (CN)
- Anhui Academy of Agricultural Sciences (CN)
- National Beef Cattle Industrial Technology System (CN)
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (CN)
- Yunnan Agricultural University (CN)
- Kunming Institute of Zoology (CN)
- Chinese Academy of Agricultural Sciences (CN)
- Trinity College Dublin (IE)
- Corresponding author
- Jiang, Yu
- Lei, Chuzhao
- ORCID
- Chen, Ningbo
- Cai, Yudong
- Chen, Qiuming
- Li, Ran
- Wang, Kun
- Huang, Yongzhen
- Hu, Songmei
- Huang, Shisheng
- Zhang, Hucai
- Zheng, Zhuqing
- Song, Weining
- Ma, Zhijie
- Dang, Ruihua
- Zhang, Zijing
- Xu, Lei
- Jia, Yutang
- Yue, Xiangpeng
- Deng, Weidong
- Zhang, Xiaoming
- Lan, Xianyong
- Han, Jianlin
- Chen, Hong
- Bradley, Daniel G
- Jiang, Yu
- Lei, Chuzhao
- Venue
- Nature Communications
- Published
- 2018-06-14
- Volume
- 9
- Issue
- 1
- Pages
- 2337-2337
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC6002414
- OpenAlex
- W2805177757
- Cited by
- 403
- References
- 60
- Citations by year
- 2026: 26 · 2025: 49 · 2024: 66 · 2023: 56 · 2022: 52 · 2021: 74 · 2020: 38 · 2019: 29 · 2018: 12
- FWCI
- 23.77
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Lanzhou University Institutional Repository (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Trinity's Access to Research Output (TARA) (Trinity College Dublin) (submittedVersion)
- Funders
- Natural Science Foundation of Qinghai Province of China
- National Natural Science Foundation of China (31501918)
- Yunnan Modern Agriculture Beef Cattle Industry Technology System
- National Thousand Youth Talents Plan
- National Beef Cattle and Yak Industrial Technology System
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Keywords
- cattle domestication, population ancestry, adaptive introgression, banteng, yak, Y-chromosome haplotypes
- MeSH terms
- Domestication, Animals, Breeding, Cattle, China, Chromosomes, Female, Genetics, Population, Geography, Haplotypes, Male, Mitochondria, Phylogeny, Species Specificity, Genetic Variation, Models, Statistical, Genome, Tibet, Polymorphism, Single Nucleotide
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
