The Mosaic Genome of Indigenous African Cattle as a Unique Genetic Resource for African Pastoralism

Trimmomatic: a flexible trimmer for Illumina sequence data

Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548 · see citing works

The Sequence Alignment/Map format and SAMtools

Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works

Fast and accurate short read alignment with Burrows-Wheeler transform

Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607 · see citing works

PLINK: a tool set for whole-genome association and population-based linkage analyses.

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895 · see citing works

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Nguyen, L.-T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msu300 · Cited by 26,046 · see citing works

Detecting the number of clusters of individuals using the software structure: a simulation study

Evanno, G., Regnaut, S., & Goudet, J. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02553.x · Cited by 21,540 · see citing works

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

Weir, B. S., & Cockerham, C. C. (1984) · Evolution · doi:10.1111/j.1558-5646.1984.tb05657.x · Cited by 18,909 · see citing works

ModelFinder: fast model selection for accurate phylogenetic estimates

Kalyaanamoorthy, S., Minh, B. Q., Wong, T. K. F., von Haeseler, A., & Jermiin, L. S. (2017) · Nature Methods · doi:10.1038/nmeth.4285 · Cited by 18,449 · see citing works

The variant call format and VCFtools

Danecek, P., Auton, A., Abecasis, G. R., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G. A., Marth, G., Sherry, S. T., et al. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr330 · Cited by 16,008 · see citing works

Evolutionary trees from DNA sequences: A maximum likelihood approach.

Felsenstein, J. (1981) · Journal of Molecular Evolution · doi:10.1007/bf01734359 · Cited by 14,571 · see citing works

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w ¹¹¹⁸ ; iso-2; iso-3

Cingolani, P., Platts, A., Wang, L. L., Coon, M., Nguyen, T., Wang, L., Land, S. J., Lu, X., & Ruden, D. M. (2012) · Fly · doi:10.4161/fly.19695 · Cited by 11,816 · see citing works

Fast model-based estimation of ancestry in unrelated individuals

Alexander, D. H., Novembre, J., & Lange, K. (2009) · Genome Research · doi:10.1101/gr.094052.109 · Cited by 9,898 · see citing works

GCTA: a tool for genome-wide complex trait analysis

Yang, J., Lee, S. H., Goddard, M. E., & Visscher, P. M. (2011) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2010.11.011 · Cited by 8,279 · see citing works

Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

Browning, S. R., & Browning, B. L. (2007) · The American Journal of Human Genetics · doi:10.1086/521987 · Cited by 3,138 · see citing works

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Mi, H., Muruganujan, A., Ebert, D., Huang, X., & Thomas, P. D. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1038 · Cited by 2,950 · see citing works

Ancient Admixture in Human History

Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848 · see citing works

A Map of Recent Positive Selection in the Human Genome

Voight, B. F., Kudaravalli, S., Wen, X., & Pritchard, J. K. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040072 · Cited by 2,847 · see citing works

STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity

Ishikawa, H., Ma, Z., & Barber, G. N. (2009) · Nature · doi:10.1038/nature08476 · Cited by 2,759 · see citing works

Ensembl 2018

Zerbino, D. R., Achuthan, P., Akanni, W., Amode, M. R., Barrell, D., Bhai, J., Billis, K., Cummins, C., Gall, A., Girón, C. G., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1098 · Cited by 2,605 · see citing works

ggmap: Spatial Visualization with ggplot2

Kahle, D. J., & Wickham, H. (2013) · The R Journal · doi:10.32614/rj-2013-014 · Cited by 2,126 · see citing works

GeneCards Version 3: the human gene integrator

Safran, M., Dalah, I., Alexander, J., Rosen, N., Stein, T. I., Shmoish, M., Nativ, N., Bahir, I., Doniger, T., Krug, H., et al. (2010) · Database · doi:10.1093/database/baq020 · Cited by 2,105 · see citing works

The Reactome pathway knowledgebase

Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1102 · Cited by 1,889 · see citing works

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

Yi, X., Liang, Y., Huerta-Sanchez, E., Jin, X., Cuo, Z. X. P., Pool, J. E., Xu, X., Jiang, H., Vinckenbosch, N., Korneliussen, T. S., et al. (2010) · Science · doi:10.1126/science.1190371 · Cited by 1,611 · see citing works

The NLRC4 inflammasome receptors for bacterial flagellin and type III secretion apparatus

Zhao, Y., Yang, J., Shi, J., Gong, Y., Lu, Q., Xu, H., Liu, L., & Shao, F. (2011) · Nature · doi:10.1038/nature10510 · Cited by 1,273 · see citing works

The Reactome pathway Knowledgebase

Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1351 · Cited by 1,201 · see citing works

Inference of Population Structure using Dense Haplotype Data

Lawson, D. J., Hellenthal, G., Myers, S., & Falush, D. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002453 · Cited by 1,188 · see citing works

The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones

Qiu, X., Shao, Y., Miao, S., & Wang, L. (2006) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-006-6192-6 · Cited by 900 · see citing works

Evidence for Two Independent Domestications of Cattle

Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M., & Cunningham, P. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.7.2757 · Cited by 812 · see citing works

A genetic atlas of human admixture history

Hellenthal, G., Busby, G. B. J., Band, G., Wilson, J. F., Capelli, C., Falush, D., & Myers, S. (2014) · Science · doi:10.1126/science.1243518 · Cited by 798 · see citing works

An activating NLRC4 inflammasome mutation causes autoinflammation with recurrent macrophage activation syndrome

Canna, S., de Jesus, A. A., Gouni, S., Brooks, S. R., Marrero, B., Liu, Y., DiMattia, M. A., Zaal, K. J. M., Sanchez, G. A. M., Kim, H., et al. (2014) · Nature Genetics · doi:10.1038/ng.3089 · Cited by 739 · see citing works

Physiological and cellular adaptations of zebu cattle to thermal stress

Hansen, P. J. (2004) · Animal Reproduction Science · doi:10.1016/j.anireprosci.2004.04.011 · Cited by 642 · see citing works

Mitochondrial diversity and the origins of African and European cattle

Bradley, D. G., MacHugh, D. E., Cunningham, P., & Loftus, R. T. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.10.5131 · Cited by 584 · see citing works

African Pastoralism: Genetic Imprints of Origins and Migrations

Hanotte, O., Bradley, D. G., Ochieng, J. W., Verjee, Y., Hill, E. W., & Rege, J. E. O. (2002) · Science · doi:10.1126/science.1069878 · Cited by 567 · see citing works

Microsatellite DNA Variation and the Evolution, Domestication and Phylogeography of Taurine and Zebu Cattle (Bos taurus and Bos indicus)

MacHugh, D. E., Shriver, M. D., Loftus, R. T., Cunningham, P., & Bradley, D. G. (1997) · Genetics · doi:10.1093/genetics/146.3.1071 · Cited by 547 · see citing works

Genes and speciation

Wu, C.-I., & Ting, C.-T. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1269 · Cited by 532 · see citing works

Inferring admixture histories of human populations using linkage disequilibrium

Loh, P.-R., Lipson, M., Patterson, N., Moorjani, P., Pickrell, J. K., Reich, D., & Berger, B. (2013) · Genetics · doi:10.1534/genetics.112.147330 · Cited by 466 · see citing works

Untitled work

(1971) · CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research) · Cited by 426 · see citing works

Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia

Chen, N., Cai, Y., Chen, Q., Li, R., Wang, K., Huang, Y., Hu, S., Huang, S., Zhang, H., Zheng, Z., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04737-0 · Cited by 403 · see citing works

A UAF1-Containing Multisubunit Protein Complex Regulates the Fanconi Anemia Pathway

Cohn, M. A., Kowal, P., Yang, K., Haas, W., Huang, T. T., Gygi, S. P., & D’Andrea, A. D. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.09.031 · Cited by 355 · see citing works

The Origins and Development of African Livestock: Archaeology, Genetics, Linguistics and Ethnography

Blench, R. M., & MacDonald, K. C. (2006) · Medical Entomology and Zoology · Cited by 348 · see citing works

The MAGUK Family Protein CARD11 Is Essential for Lymphocyte Activation

Hara, H., Wada, T., Bakal, C., Kozieradzki, I., Suzuki, S., Suzuki, N., Nghiem, M. P., Griffiths, E. K., Krawczyk, C. M., Bauer, B., et al. (2003) · Immunity · doi:10.1016/s1074-7613(03)00148-1 · Cited by 336 · see citing works

Identification of FAAP24, a Fanconi Anemia Core Complex Protein that Interacts with FANCM

Ciccia, A., Ling, C., Coulthard-Graf, R., Yan, Z., Xue, Y., Meetei, A. R., Laghmani, E. H., Joenje, H., McDonald, N. Q., de Winter, J. P., et al. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.01.003 · Cited by 321 · see citing works

Population admixture, biological invasions and the balance between local adaptation and inbreeding depression

Verhoeven, K. J. F., Macel, M., Wolfe, L. M., & Biere, A. (2010) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2010.1272 · Cited by 309 · see citing works

Ancient west Eurasian ancestry in southern and eastern Africa

Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1313787111 · Cited by 300 · see citing works

- Invited Review - African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World

Mwai, O., Hanotte, O., Kwon, Y.-J., & Cho, S. (2015) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.15.0002r · Cited by 300 · see citing works

Physiology and pathophysiology of the vasopressin-regulated renal water reabsorption

Boone, M., & Deen, P. M. T. (2008) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-008-0498-1 · Cited by 291 · see citing works

Mitochondrial Genomes of Extinct Aurochs Survive in Domestic Cattle

Achilli, A., Olivieri, A., Pellecchia, M., Uboldi, C., Colli, L., Al-Zahery, N., Accetturo, M., Pala, M., Kashani, B. H., Perego, U. A., et al. (2008) · Current Biology · doi:10.1016/j.cub.2008.01.019 · Cited by 290 · see citing works

On the Origin of Cattle: How Aurochs Became Cattle and Colonized the World

Ajmone‐Marsan, P., Garcia, J. F., & Lenstra, J. A. (2010) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.20267 · Cited by 287 · see citing works

An inherited mutation in NLRC4 causes autoinflammation in human and mice

Kitamura, A., Sasaki, Y., Abe, T., Kano, H., & Yasutomo, K. (2014) · The Journal of Experimental Medicine · doi:10.1084/jem.20141091 · Cited by 284 · see citing works

Domesticating animals in Africa: implications of genetic and archaeological findings

Gifford-Gonzalez, D., & Hanotte, O. (2011) · Journal of World Prehistory · doi:10.1007/s10963-010-9042-2 · Cited by 274 · see citing works

The Genome Landscape of Indigenous African Cattle

Kim, J., Hanotte, O., Mwai, O. A., Dessie, T., Bashir, S., Diallo, B., Agaba, M., Kim, K., Kwak, W., Sung, S., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1153-y · Cited by 271 · see citing works

A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics

Bibi, F. (2013) · BMC Evolutionary Biology · doi:10.1186/1471-2148-13-166 · Cited by 265 · see citing works

"Dark" Purkinje cells of the cerebellar cortex.

Leranth, C., & Hámori, J. (1970) · PubMed · Cited by 264 · see citing works

Geographic distribution and frequency of a taurine <i>Bos taurus</i> and an indicine <i>Bos indicus Y</i> specific allele amongst sub‐Saharan African cattle breeds

Hanotte, O., Tawah, C. L., Bradley, D. G., Okomo, M., Verjee, Y., Ochieng, J., & Rege, J. E. O. (2000) · Molecular Ecology · doi:10.1046/j.1365-294x.2000.00858.x · Cited by 257 · see citing works

HEXIM1 and NEAT1 Long Non-coding RNA Form a Multi-subunit Complex that Regulates DNA-Mediated Innate Immune Response

Morchikh, M., Cribier, A., Raffel, R., Amraoui, S., Cau, J., Séverac, D., Dubois, E., Schwartz, O., Bennasser, Y., & Benkirane, M. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.06.020 · Cited by 236 · see citing works

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

Wu, D., Ding, X., Wang, S., Wójcik, J. M., Zhang, Y., Tokarska, M., Li, Y., Wang, M.-S., Faruque, O., Nielsen, R., et al. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0562-y · Cited by 233 · see citing works

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis

Ma, L., O’Connell, J. R., VanRaden, P. M., Shen, B., Padhi, A., Sun, C., Bickhart, D. M., Cole, J. B., Null, D. J., Liu, G. E., et al. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005387 · Cited by 232 · see citing works

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

Park, S. D. E., Magee, D. A., McGettigan, P., Teasdale, M. D., Edwards, C. J., Lohan, A. J., Murphy, A., Braud, M., Donoghue, M. T. A., Liu, Y., et al. (2015) · Genome biology · doi:10.1186/s13059-015-0790-2 · Cited by 228 · see citing works

Genetics of adaptation in domestic farm animals: A review

Mirkena, T., Duguma, G., Haile, A., Tibbo, M., Okeyo, A. M., Wurzinger, M., & Sölkner, J. (2010) · Livestock Science · doi:10.1016/j.livsci.2010.05.003 · Cited by 214 · see citing works

CARD11 mediates factor‐specific activation of NF‐κB by the T cell receptor complex

Pomerantz, J. L., Denny, E. M., & Baltimore, D. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf505 · Cited by 211 · see citing works

Mapping of quantitative trait loci controlling trypanotolerance in a cross of tolerant West African N'Dama and susceptible East African Boran cattle

Hanotte, O., Ronin, Y. I., Agaba, M. K., Nilsson, P. R., Gelhaus, A., Horstmann, R., Sugimoto, Y., Kemp, S. J., Gibson, J. P., Korol, A. B., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1232392100 · Cited by 196 · see citing works

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

Gautier, M., Flori, L., Riebler, A., Jaffrézic, F., Laloë, D., Gut, I. G., Moazami‐Goudarzi, K., & Foulley, J. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-550 · Cited by 196 · see citing works

Hybridisation is associated with increased fecundity and size in invasive taxa: meta‐analytic support for the hybridisation‐invasion hypothesis

Hovick, S. M., & Whitney, K. D. (2014) · Ecology Letters · doi:10.1111/ele.12355 · Cited by 193 · see citing works

Animal Disease Challenges to the Emergence of Pastoralism in Sub-Saharan Africa

Gifford-Gonzalez, D. P. (2000) · African Archaeological Review · doi:10.1023/a:1006601020217 · Cited by 183 · see citing works

The Peopling of Africa: A Geographic Interpretation.

McCall, D. F., & Newman, J. L. (1996) · The American Historical Review · doi:10.2307/2170286 · Cited by 150 · see citing works

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

Neto, L. R. P., Sonstegard, T. S., Liu, G. E., Bickhart, D. M., Silva, M. V. D., Machado, M. A., Utsunomiya, Y. T., Garcia, J. F., Gondro, C., & Tassell, C. P. V. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-876 · Cited by 146 · see citing works

TMEM173 variants and potential importance to human biology and disease

Patel, S., & Jin, L. (2018) · Genes and Immunity · doi:10.1038/s41435-018-0029-9 · Cited by 139 · see citing works

Mason's world encyclopedia of livestock breeds and breeding. Volume 1 and Volume 2

(2016) · CABI eBooks · doi:10.1079/9781845934668.0000 · Cited by 136 · see citing works

Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks

Međugorac, I., Graf, A., Grohs, C., Rothammer, S., Zagdsuren, Y., Александровна, Г. Е., Zinovieva, N. A., Barbieri, J., Seichter, D., Ruß, I., et al. (2017) · Nature Genetics · doi:10.1038/ng.3775 · Cited by 129 · see citing works

Inside the “African Cattle Complex”: Animal Burials in the Holocene Central Sahara

di Lernia, S., Tafuri, M. A., Gallinaro, M., Alhaique, F., Balasse, M., Cavorsi, L., Fullagar, P. D., Mercuri, A. M., Monaco, A. L., Perego, A., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056879 · Cited by 128 · see citing works

Genomic clues of the evolutionary history of <i>Bos indicus</i> cattle

Utsunomiya, Y. T., Milanesi, M., Fortes, M. R. S., Porto‐Neto, L. R., Utsunomiya, A. T. H., Silva, M. V. G. B., Garcia, J. F., & Ajmone‐Marsan, P. (2019) · Animal Genetics · doi:10.1111/age.12836 · Cited by 128 · see citing works

Genome-Wide Scan for Selection Signatures in Six Cattle Breeds in South Africa

Makina, S. O., Muchadeyi, F. C., van Marle-Köster, E., Taylor, J. F., Makgahlela, M. L., & Maiwashe, A. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0173-x · Cited by 125 · see citing works

Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species

Alves, T. D., Mairal, J., & Blum, M. G. B. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy126 · Cited by 123 · see citing works

Genome Sequence and Assembly of Bos indicus

Canavez, F., Luche, D. D., Stothard, P., Leite, K. R. M., de Sousa-Canavez, J. M., Plastow, G. S., Meidânis, J., Souza, M. A., Feijão, P., Moore, S. S., et al. (2012) · Journal of Heredity · doi:10.1093/jhered/esr153 · Cited by 120 · see citing works

Leucine-rich repeat containing 8A (LRRC8A) is essential for T lymphocyte development and function

Kumar, L., Chou, J. S., Yee, C. S. K., Borzutzky, A., Vollmann, E. H., von Andrian, U. H., Park, S., Holländer, G. A., Manis, J. P., Poliani, P. L., et al. (2014) · The Journal of Experimental Medicine · doi:10.1084/jem.20131379 · Cited by 120 · see citing works

Mzb1 Protein Regulates Calcium Homeostasis, Antibody Secretion, and Integrin Activation in Innate-like B Cells

Flach, H., Rosenbaum, M., Duchniewicz, M., Kim, S., Zhang, S. L., Cahalan, M. D., Mittler, G., & Grosschedl, R. (2010) · Immunity · doi:10.1016/j.immuni.2010.11.013 · Cited by 118 · see citing works

Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis

Bahbahani, H. M., Clifford, H., Wragg, D., Mbole-Kariuki, M. N., Tassell, C. P. V., Sonstegard, T. S., Woolhouse, M. E. J., & Hanotte, O. (2015) · Scientific Reports · doi:10.1038/srep11729 · Cited by 110 · see citing works

Admixture and diversity in West African cattle populations

Freeman, A., Meghen, C., MacHugh, D., Loftus, R., Achukwi, M. D., Bado, A., Sauveroche, B., & Bradley, D. (2004) · Molecular Ecology · doi:10.1111/j.1365-294x.2004.02311.x · Cited by 108 · see citing works

The advent of herding in the Horn of Africa: New data from Ethiopia, Djibouti and Somaliland

Lesur, J., Hildebrand, E., Abawa, G., & Gutherz, X. (2013) · Quaternary International · doi:10.1016/j.quaint.2013.11.024 · Cited by 107 · see citing works

Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1

Bonfiglio, S., Ginja, C., De Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S. H., Gama, L. T., Cattonaro, F., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038601 · Cited by 106 · see citing works

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

MacEachern, S., Hayes, B. J., McEwan, J. C., & Goddard, M. E. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-181 · Cited by 103 · see citing works

Indian Ocean Food Globalisation and Africa

Boivin, N. L., Crowther, A., Prendergast, M. E., & Fuller, D. Q. (2014) · African Archaeological Review · doi:10.1007/s10437-014-9173-4 · Cited by 103 · see citing works

On the Breeds of Cattle—Historic and Current Classifications

Felius, M., Koolmees, P. A., Theunissen, B., & Lenstra, J. A. (2011) · Diversity · doi:10.3390/d3040660 · Cited by 102 · see citing works

Genetic Resistance to African Trypanosomiasis

Murray, M., Trail, J. C. M., Davis, C. E. L. B., & Black, S. J. (1984) · The Journal of Infectious Diseases · doi:10.1093/infdis/149.3.311 · Cited by 99 · see citing works

ATG4B (Autophagin-1) Phosphorylation Modulates Autophagy

Yang, Z., Wilkie-Grantham, R. P., Yanagi, T., Shu, C., Matsuzawa, S., & Reed, J. C. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.658088 · Cited by 96 · see citing works

Spatial complexity of ‘Little Ice Age’ climate in East Africa: sedimentary records from two crater lake basins in western Uganda

Russell, J. M., Verschuren, D., & Eggermont, H. (2007) · The Holocene · doi:10.1177/0959683607075832 · Cited by 90 · see citing works

Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu

Bahbahani, H. M., Tijjani, A., Mukasa, C., Wragg, D., Almathen, F. S., Nash, O., Akpa, G. N., Mbole-Kariuki, M. N., Malla, S., Woolhouse, M. E. J., et al. (2017) · Frontiers in Genetics · doi:10.3389/fgene.2017.00068 · Cited by 89 · see citing works

Studies on Trypanosome-resistant cattle. II. The effect of Trypanosomiasis on N'dama, Muturu and Zebu cattle

Roberts, C. J., & Gray, A. R. (1973) · Tropical Animal Health and Production · doi:10.1007/bf02240423 · Cited by 88 · see citing works

Developing a continental atlas of the distribution and trypanosomal infection of tsetse flies (Glossina species)

Cecchi, G., Paone, M., Argilés-Herrero, R., Vreysen, M. J. B., & Mattioli, R. C. (2015) · Parasites & Vectors · doi:10.1186/s13071-015-0898-y · Cited by 88 · see citing works

Adaptive admixture in the W est A frican bovine hybrid zone: insight from the B orgou population

Flori, L., Thévenon, S., Dayo, G., Sènou, M., Sylla, S., Berthier, D., Moazami‐Goudarzi, K., & Gautier, M. (2014) · Molecular Ecology · doi:10.1111/mec.12816 · Cited by 88 · see citing works

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to <i>Trypanosoma congolense</i> infection

Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A. L., Bradley, D. G., Fisher, P., Freeman, A., Gibson, J., Gicheru, M., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1013486108 · Cited by 88 · see citing works

Zebu cattle of Kenya: Uses, performance, farmer preferences, measures of genetic diversity and options for improved use

Rege, J. E. O., Kahi, A. K., Okomo‐Adhiambo, M., Mwacharo, J. M., & Hanotte, O. (2001) · CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research) · Cited by 86 · see citing works

Rift Valley fever virus inhibits a pro-inflammatory response in experimentally infected human monocyte derived macrophages and a pro-inflammatory cytokine response may be associated with patient survival during natural infection

McElroy, A. K., & Nichol, S. T. (2011) · Virology · doi:10.1016/j.virol.2011.09.023 · Cited by 85 · see citing works

hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets: Fig. 1.

MacLean, C., Hong, N. C., & Prendergast, J. G. D. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv172 · Cited by 84 · see citing works

“Animal disease challenges” fifteen years later: The hypothesis in light of new data

Gifford-Gonzalez, D. P. (2016) · Quaternary International · doi:10.1016/j.quaint.2015.10.054 · Cited by 84 · see citing works

The Origins and Development of African Livestock

Blench, R. M., & MacDonald, K. C. (2006) · Routledge eBooks · doi:10.4324/9780203984239 · Cited by 81 · see citing works

EPIDEMICS AND REVOLUTIONS: THE RINDERPEST EPIDEMIC IN LATE NINETEENTH–CENTURY SOUTHERN AFRICA

Phoofolo, P. (1993) · Past & Present · doi:10.1093/past/138.1.112 · Cited by 80 · see citing works

Host genetics in African trypanosomiasis

Courtin, D., Berthier, D., Thévenon, S., Dayo, G., Garcia, A., & Bucheton, B. (2008) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2008.02.007 · Cited by 78 · see citing works

Towards a new phenotype for tick resistance in beef and dairy cattle: a review

Burrow, H. M., Mans, B. J., Cardoso, F. F., Birkett, M. A., Kotze, A. C., Hayes, B. J., Mapholi, N. O., Dzama, K., Marufu, M. C., Githaka, N., et al. (2019) · Animal Production Science · doi:10.1071/an18487 · Cited by 74 · see citing works

Genome Sequence Analysis Reveals Selection Signatures in Endangered Trypanotolerant West African Muturu Cattle

Tijjani, A., Utsunomiya, Y. T., Ezekwe, A. G., Nashiru, O., & Hanotte, O. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00442 · Cited by 72 · see citing works

Toward the identification of a subset of unexplained infertility: a sperm proteomic approach

McReynolds, S., Dzieciątkowska, M., Stevens, J., Hansen, K. C., Schoolcraft, W. B., & Katz‐Jaffe, M. G. (2014) · Fertility and Sterility · doi:10.1016/j.fertnstert.2014.05.021 · Cited by 71 · see citing works

SEPT12 orchestrates the formation of mammalian sperm annulus by organizing SEPT12-7-6-2/-4 core complexes

Kuo, Y., Shen, Y.-R., Chen, H.-I., Lin, Y., Wang, Y., Chen, Y., Wang, C., & Kuo, P. (2015) · Journal of Cell Science · doi:10.1242/jcs.158998 · Cited by 69 · see citing works

Identification of mechanisms of natural resistance to African trypanosomiasis in cattle

Naessens, J., Teale, A. J., & Sileghem, M. (2002) · Veterinary Immunology and Immunopathology · doi:10.1016/s0165-2427(02)00070-3 · Cited by 69 · see citing works

Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya

Mbole-Kariuki, M. N., Sonstegard, T., Orth, A., Thumbi, S. M., Bronsvoort, B. M. D. C., Kiara, H., Toye, P., Conradie, I., Jennings, A., Coetzer, K., et al. (2014) · Heredity · doi:10.1038/hdy.2014.31 · Cited by 69 · see citing works

Signatures of positive selection in African Butana and Kenana dairy zebu cattle

Bahbahani, H., Salim, B., Almathen, F., Al Enezi, F., Mwacharo, J. M., & Hanotte, O. (2018) · PLOS ONE · doi:10.1371/journal.pone.0190446 · Cited by 67 · see citing works

Early herders and monumental sites in eastern Africa: dating and interpretation

Hildebrand, E., & Grillo, K. M. (2012) · Antiquity · doi:10.1017/s0003598x00062803 · Cited by 66 · see citing works

Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled

Koufariotis, L. T., Hayes, B. J., Kelly, M., Burns, B. M., Lyons, R. E., Stothard, P., Chamberlain, A. J., & Moore, S. S. (2018) · Scientific Reports · doi:10.1038/s41598-018-35698-5 · Cited by 66 · see citing works

Y‐specific microsatellites reveal an African subfamily in taurine (<i>Bos taurus</i>) cattle

Pérez‐Pardal, L., Royo, L. J., Beja‐Pereira, A., Curik, I., Traoré, A., Fernández, I., Sölkner, J., Alonso, J., Álvarez, I., Bozzi, R., et al. (2010) · Animal Genetics · doi:10.1111/j.1365-2052.2009.01988.x · Cited by 61 · see citing works

Climate, ecology, and the spread of herding in eastern Africa

Chritz, K. L., Cerling, T. E., Freeman, K. H., Hildebrand, E., Janzen, A., & Prendergast, M. E. (2018) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2018.11.029 · Cited by 52 · see citing works

Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level

Shin, D., Lee, H. J., Cho, S., Kim, H. J., Hwang, J. Y., Lee, C., Jeong, J., Yoon, D., & Kim, H. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-240 · Cited by 51 · see citing works

IFNAR1 Controls Progression to Cerebral Malaria in Children and CD8+ T Cell Brain Pathology in Plasmodium berghei–Infected Mice

Ball, E. A., Sambo, M. D. R., Martins, M., Trovoada, M. J., Benchimol, C., Costa, J., Gonçalves, L. A., Coutinho, A., & Penha‐Gonçalves, C. (2013) · The Journal of Immunology · doi:10.4049/jimmunol.1300114 · Cited by 48 · see citing works

The Tick Protein Sialostatin L2 Binds to Annexin A2 and Inhibits NLRC4-Mediated Inflammasome Activation

Wang, X., Shaw, D. K., Sakhon, O. S., Snyder, G. A., Sundberg, E. J., Santambrogio, L., Sutterwala, F. S., Dumler, J. S., Shirey, K. A., Perkins, D. J., et al. (2016) · Infection and Immunity · doi:10.1128/iai.01526-15 · Cited by 48 · see citing works

Inferring Heterozygosity from Ancient and Low Coverage Genomes

Kousathanas, A., Leuenberger, C., Link, V., Sell, C., Bürger, J., & Wegmann, D. (2016) · Genetics · doi:10.1534/genetics.116.189985 · Cited by 48 · see citing works

Response of four indigenous cattle breeds to natural tsetse and trypanosomosis challenge in the Ghibe valley of Ethiopia

Lemecha, H., Mulatu, W., Hussein, I., Rege, E., Tekle, T., Abdicho, S., & Ayalew, W. (2006) · Veterinary Parasitology · doi:10.1016/j.vetpar.2006.04.035 · Cited by 47 · see citing works

Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production

Lee, H. J., Kim, J., Lee, T., Son, J.-K., Yoon, H., Baek, K., Jeong, J. Y., Cho, Y.-M., Lee, K., Yang, B., et al. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu102 · Cited by 46 · see citing works

Trypanosomosis: potential driver of selection in African cattle

Smetko, A., Soudré, A., Silbermayr, K., Müller, S., Brem, G., Hanotte, O., Boettcher, P. J., Stella, A., Mészáros, G., Wurzinger, M., et al. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00137 · Cited by 44 · see citing works

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension

Heaton, M. P., Smith, T. P. L., Carnahan, J. K., Basnayake, V. R., Qiu, J., Simpson, B., & Kalbfleisch, T. (2016) · F1000Research · doi:10.12688/f1000research.9254.2 · Cited by 38 · see citing works

Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia

Bahbahani, H. M., Afana, A., & Wragg, D. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202479 · Cited by 37 · see citing works

Low levels of taurine introgression in the current Brazilian Nelore and Gir indicine cattle populations

O’Brien, A. M. P., Holler, D. A., Boison, S. A., Milanesi, M., Bomba, L., Utsunomiya, Y. T., Carvalheiro, R., Neves, H. H. D. R., Silva, M. V. D., Vantassell, C. P., et al. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0109-5 · Cited by 34 · see citing works

A Model of African Indigenous Economy and Society

Schneider, H. K. (1964) · Comparative Studies in Society and History · doi:10.1017/s0010417500003443 · Cited by 33 · see citing works

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

Smedley, D. P., Schofield, P. N., Chen, C.-K., Aidinis, V., Ainali, C., Bard, J., Balling, R., Birney, E., Blake, A., Bongcam‐Rudloff, E., et al. (2010) · Database · doi:10.1093/database/baq014 · Cited by 31 · see citing works

Domesticating Animals in Africa

Gifford-Gonzalez, D. P., & Hanotte, O. (2013) · Oxford University Press eBooks · doi:10.1093/oxfordhb/9780199569885.013.0034 · Cited by 30 · see citing works

Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals

Taylor, J. F., Whitacre, L. K., Hoff, J. L., Tizioto, P. C., Kim, J., Decker, J. E., & Schnabel, R. D. (2016) · Genetics Selection Evolution · doi:10.1186/s12711-016-0237-6 · Cited by 30 · see citing works

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with high-altitude pulmonary hypertension

Heaton, M. P., Smith, T. P. L., Carnahan, J. K., Basnayake, V. R., Qiu, J., Simpson, B., & Kalbfleisch, T. (2016) · F1000Research · doi:10.12688/f1000research.9254.1 · Cited by 28 · see citing works

Microsatellite Analysis of Genetic Population Structure of Zebu Cattle (Bos indicus) Breeds from North-Western Region of India

Sodhi, M., Mukesh, M., Mishra, B., Ahlawat, S., Prakash, B., & Sobti, R. C. (2011) · Animal Biotechnology · doi:10.1080/10495398.2011.536091 · Cited by 22 · see citing works

Variations in mitochondrial cytochrome b region among Ethiopian indigenous cattle populations assert Bos taurus maternal origin and historical dynamics

Tarekegn, G. M., Ji, X., Bai, X., Liu, B., Zhang, W., Birungi, J., Djikeng, A., & Tesfaye, K. (2018) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.17.0596 · Cited by 22 · see citing works

Quantitative Analysis of Cytokine mRNA Expression and Protozoan DNA Load in Theileria parva-Infected Cattle

Yamada, S., Konnai, S., Imamura, S., Simuunza, M. C., Chembensofu, M., Chota, A., Nambota, A. M., Onuma, M., & Ohashi, K. (2009) · Journal of Veterinary Medical Science · doi:10.1292/jvms.71.49 · Cited by 19 · see citing works

The Archaeology of Herding in Southernmost Africa

Sadr, K. (2013) · Oxford University Press eBooks · doi:10.1093/oxfordhb/9780199569885.013.0044 · Cited by 19 · see citing works

The Bos taurus–Bos indicus balance in fertility and milk related genes

Kasarapu, P., Neto, L. R. P., Fortes, M. R. S., Lehnert, S. A., Mudadu, M. A., Coutinho, L. L., Regitano, L. C. D. A., George, A. W., & Reverter, A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0181930 · Cited by 16 · see citing works

PABP Interacting Protein 2 (Paip2) Is a Major Translational Regulator Involved in the Maturation of Male Germ Cells and Male Fertility.

Delbès, G., Yanagiya, A., Sonenberg, N., & Robaire, B. (2009) · Biology of Reproduction · doi:10.1093/biolreprod/81.s1.167 · Cited by 3 · see citing works

Novel Functional Sequences Uncovered through a Bovine Multiassembly Graph

Crysnanto, D., Leonard, A. S., Fang, Z.-H., & Pausch, H. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2101056118 · Cited by 96 · see citing works

Assembly of a Pangenome for Global Cattle Reveals Missing Sequences and Novel Structural Variations, Providing New Insights into Their Diversity and Evolutionary History

Zhou, Y., Yang, L., Han, X., Han, J., Hu, Y., Li, F., Xia, H., Peng, L., Boschiero, C., Rosen, B. D., et al. (2022) · Genome Research · doi:10.1101/gr.276550.122 · Cited by 89 · see citing works

Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing

Chen, N., Xia, X., Hanif, Q., Zhang, F., Dang, R., Huang, B., Lyu, Y., Luo, X., Zhang, H., Yan, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43626-z · Cited by 83 · see citing works

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies

Leonard, A. S., Crysnanto, D., Fang, Z., Heaton, M. P., Ley, B. L. V., Herrera, C., Bollwein, H., Bickhart, D. M., Kuhn, K. L., Smith, T. P. L., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-30680-2 · Cited by 76 · see citing works

Pangenome graphs and their applications in biodiversity genomics

Secomandi, S., Gallo, G. R., Rossi, R., Fernandes, C., Jarvis, E. D., Bonisoli‐Alquati, A., Gianfranceschi, L., & Formenti, G. (2025) · Nature Genetics · doi:10.1038/s41588-024-02029-6 · Cited by 74 · see citing works

The Quest for Genes Involved in Adaptation to Climate Change in Ruminant Livestock

Passamonti, M. M., Somenzi, E., Barbato, M., Chillemi, G., Colli, L., Joost, S., Milanesi, M., Negrini, R., Santini, M., Vajana, E., et al. (2021) · Animals · doi:10.3390/ani11102833 · Cited by 60 · see citing works

Genetic Improvement of Local Cattle Breeds in West Africa: A Review of Breeding Programs

Ouédraogo, D., Soudré, A., Yougbaré, B., Ouédraogo‐Koné, S., Zoma‐Traoré, B., Khayatzadeh, N., Traoré, A., Sanou, M., Mészáros, G., Burger, P. A., et al. (2021) · Sustainability · doi:10.3390/su13042125 · Cited by 45 · see citing works

Global dispersal and adaptive evolution of domestic cattle: a genomic perspective

Xia, X., Qu, K., Wang, Y., Sinding, M. S., Wang, F., Hanif, Q., Ahmed, Z., Lenstra, J. A., Han, J., Lei, C., et al. (2023) · Stress Biology · doi:10.1007/s44154-023-00085-2 · Cited by 48 · see citing works

A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other<i>Bos</i>species

Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., et al. (2023) · Genome Research · doi:10.1101/gr.277481.122 · Cited by 43 · see citing works

Genome-Wide Local Ancestry and Direct Evidence for Mitonuclear Coadaptation in African Hybrid Cattle Populations ( Bos Taurus/Indicus)

Ward, J. A., McHugo, G. P., Dover, M. J., Hall, T. J., Ng’ang’a, S. I., Sonstegard, T. S., Bradley, D. G., Frantz, L., Salter‐Townshend, M., & MacHugh, D. E. (2022) · iScience · doi:10.1016/j.isci.2022.104672 · Cited by 45 · see citing works

Genomic prediction of crossbred dairy cattle in Tanzania: A route to productivity gains in smallholder dairy systems

Mrode, R., Ojango, J. M. K., Ekine-Dzivenu, C. C., Aliloo, H., Gibson, J. P., & Okeyo, M. A. (2021) · Journal of Dairy Science · doi:10.3168/jds.2020-20052 · Cited by 40 · see citing works

Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression

Čubrić-Ćurik, V., Novosel, D., Brajković, V., Rota‐Stabelli, O., Krebs, S., Sölkner, J., Šalamon, D., Ristov, S., Berger, B., Trivizaki, S., et al. (2021) · Evolutionary Applications · doi:10.1111/eva.13315 · Cited by 40 · see citing works

Sustainable Management of Animal Genetic Resources to Improve Low-Input Livestock Production: Insights into Local Beninese Cattle Populations

Vanvanhossou, S. F. U., Dossa, L. H., & König, S. (2021) · Sustainability · doi:10.3390/su13179874 · Cited by 35 · see citing works

Genomic signatures for drylands adaptation at gene-rich regions in African zebu cattle

Tijjani, A., Salim, B., da Silva, M. V. B., Eltahir, H. A., Musa, T. H., Marshall, K., Hanotte, O., & Musa, H. H. (2022) · Genomics · doi:10.1016/j.ygeno.2022.110423 · Cited by 41 · see citing works

Genomic adaptation of Ethiopian indigenous cattle to high altitude

Terefe, E., Belay, G., Han, J., Hanotte, O., & Tijjani, A. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.960234 · Cited by 36 · see citing works

Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids

Jang, J., Terefe, E., Kim, K., Lee, Y. H., Belay, G., Tijjani, A., Han, J., Hanotte, O., & Kim, H. (2021) · BMC Genomics · doi:10.1186/s12864-021-07808-7 · Cited by 33 · see citing works

Human adaptation, demography and cattle domestication: an overview of the complexity of lactase persistence in Africa

Campbell, M. C., & Ranciaro, A. (2021) · Human Molecular Genetics · doi:10.1093/hmg/ddab027 · Cited by 32 · see citing works

Ancient autozygous segments subject to positive selection suggest adaptive immune responses in West African cattle

Goyache, F., Pérez-Pardal, L., Fernández, I., Traoré, A., Menéndez‐Arias, N. A., & Álvarez, I. (2021) · Gene · doi:10.1016/j.gene.2021.145899 · Cited by 28 · see citing works

Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review

Kambal, S., Tijjani, A., Ibrahim, S. A. E., Ahmed, M. A., Mwacharo, J. M., & Hanotte, O. (2023) · Animal Genetics · doi:10.1111/age.13353 · Cited by 27 · see citing works

Natural adaptation and human selection of northeast African sheep genomes

Ahbara, A., Musa, H. H., Robert, C., Abebe, A., Al-Jumaili, A. S., Kebede, A., Latairish, S., Agoub, M. O., Clark, E. L., Hanotte, O., et al. (2022) · Genomics · doi:10.1016/j.ygeno.2022.110448 · Cited by 27 · see citing works

When barcoding fails: Genome chimerization (admixing) and reticulation obscure phylogenetic and taxonomic relationships

Sipiczki, M. (2022) · Molecular Ecology Resources · doi:10.1111/1755-0998.13586 · Cited by 25 · see citing works

Inference of Admixture Origins in Indigenous African Cattle

Kim, K., Kim, D., Hanotte, O., Lee, C., Kim, H., & Jeong, C. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad257 · Cited by 24 · see citing works

Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

Kwon, T., Kim, K., Caetano-Anollés, K., Sung, S., Cho, S., Jeong, C., Hanotte, O., & Kim, H. (2022) · BMC Biology · doi:10.1186/s12915-021-01206-x · Cited by 23 · see citing works

Whole genome sequencing of simmental cattle for SNP and CNV discovery

Sun, T., Pei, S., Liu, Y., Hanif, Q., Xu, H., Chen, N., Lei, C., & Yue, X. (2023) · BMC Genomics · doi:10.1186/s12864-023-09248-x · Cited by 23 · see citing works

Whole Genome Sequencing Reveals Signals of Adaptive Admixture in Creole Cattle

Ben-Jemaa, S., Adam, G., Boussaha, M., Bardou, P., Klopp, C., Mandonnet, N., & Naves, M. (2023) · Scientific Reports · doi:10.1038/s41598-023-38774-7 · Cited by 22 · see citing works

Whole Genome Resequencing Reveals Genetic Diversity and Selection Signatures of Ethiopian Indigenous Cattle Adapted to Local Environments

Terefe, E., Belay, G., Tijjani, A., Han, J., & Hanotte, O. (2023) · Diversity · doi:10.3390/d15040540 · Cited by 21 · see citing works

Adaptation of the White Fulani cattle to the tropical environment

Oke, O. E., Oso, O. M., Logunleko, M. O., Uyanga, V. A., Akinyemi, F., Okeniyi, F. A., Akosile, O. A., Baloyi, J. J., & Onagbesan, O. M. (2022) · Journal of Thermal Biology · doi:10.1016/j.jtherbio.2022.103372 · Cited by 21 · see citing works

Genomic characterization of animal genetic resources

Boitard, S., Chikhi, L., da Fonseca, R. R., Ginja, C., Kantanen, J., Lenstra, J. A., Orozco‐terWengel, P., & Pausch, H. (2023) · FAO eBooks · doi:10.4060/cc3079en · Cited by 24 · see citing works

BoLA-DRB3 gene haplotypes show divergence in native Sudanese cattle from taurine and indicine breeds

Salim, B., Takeshima, S., Nakao, R., Moustafa, M. A. M., Ahmed, M. A., Kambal, S., Mwacharo, J. M., Alkhaibari, A. M., & Giovambattista, G. (2021) · Scientific Reports · doi:10.1038/s41598-021-96330-7 · Cited by 20 · see citing works

Unraveling Admixture, Inbreeding, and Recent Selection Signatures in West African Indigenous Cattle Populations in Benin

Vanvanhossou, S. F. U., Yin, T., Scheper, C., Fries, R., Dossa, L. H., & König, S. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.657282 · Cited by 19 · see citing works

Population structure, inbreeding and admixture in local cattle populations managed by community‐based breeding programs in Burkina Faso

Ouédraogo, D., Ouédraogo‐Koné, S., Yougbaré, B., Soudré, A., Zoma‐Traoré, B., Mészáros, G., Khayatzadeh, N., Traoré, A., Sanou, M., Mwai, O. A., et al. (2021) · Journal of Animal Breeding and Genetics · doi:10.1111/jbg.12529 · Cited by 19 · see citing works

Beef Cattle Genome Project: Advances in Genome Sequencing, Assembly, and Functional Genes Discovery

Gao, Z., Lu, Y., Chong, Y., Li, M., Hong, J., Wu, J., Wu, D., Xi, D., & Deng, W. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25137147 · Cited by 18 · see citing works

Genomic Diversity and Selection Signatures for Weining Cattle on the Border of Yunnan-Guizhou

Liu, Y., Cheng, H., Wang, S., Luo, X., Ma, X., Sun, L., Chen, N., Zhang, J., Qu, K., Wang, M., et al. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.848951 · Cited by 18 · see citing works

Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle

Ward, J. A., Ng'ang'a, S. I., Randhawa, I. A. S., McHugo, G. P., O'Grady, J. F., Flórez, J. M., Browne, J. A., Pérez O’Brien, A. M., Landaeta-Hernández, A. J., Garcia, J. F., et al. (2024) · Royal Society Open Science · doi:10.1098/rsos.231388 · Cited by 17 · see citing works

Collagen fingerprinting traces the introduction of caprines to island Eastern Africa

Culley, C., Janzen, A., Brown, S., Prendergast, M. E., Wolfhagen, J., Bourhane, A., Ali, A. K., Haji, O. N., Horton, M., Shipton, C., et al. (2021) · Royal Society Open Science · doi:10.1098/rsos.202341 · Cited by 17 · see citing works

Genome-wide investigations reveal the population structure and selection signatures of Nigerian cattle adaptation in the sub-Saharan tropics

Mauki, D. H., Tijjani, A., Ma, C., Ng’ang’a, S. I., Mark, A. I., Sanke, O. J., Abdussamad, A. M., Olaogun, S. C., Ibrahim, J., Dawuda, P. M., et al. (2022) · BMC Genomics · doi:10.1186/s12864-022-08512-w · Cited by 18 · see citing works

Whole-genome sequencing of copy number variation analysis in Ethiopian cattle reveals adaptations to diverse environments

Ayalew, W., Xiaoyun, W., Tarekegn, G. M., Tessema, T. S., Chu, M., Liang, C., Naboulsi, R., Van Damme, R., Bongcam-Rudloff, E., & Ping, Y. (2024) · BMC Genomics · doi:10.1186/s12864-024-10936-5 · Cited by 15 · see citing works

Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7+ Cells

Dai, S., Zhao, P., Li, W., Peng, L., Jiang, E., Du, Y., Zhang, W., Dai, X., Yang, L., Li, Z., et al. (2025) · Molecular Biology and Evolution · doi:10.1093/molbev/msaf205 · Cited by 15 · see citing works

Genomic insights into adaptation and inbreeding among Sub-Saharan African cattle from pastoral and agropastoral systems

Akinsola, O. M., Musa, A. A., Muansangi, L., Singh, S. P., Mukherjee, S., & Mukherjee, A. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2024.1430291 · Cited by 15 · see citing works

Genetic variation of Nigerian cattle inferred from maternal and paternal genetic markers

Mauki, D. H., Adeola, A. C., Ng’ang’a, S. I., Tijjani, A., Akanbi, I. M., Sanke, O. J., Abdussamad, A. M., Olaogun, S. C., Ibrahim, J., Dawuda, P. M., et al. (2021) · PeerJ · doi:10.7717/peerj.10607 · Cited by 15 · see citing works

Assessing Genomic Diversity and Productivity Signatures in Dianzhong Cattle by Whole-Genome Scanning

Zhang, X., Qu, K., Jia, P., Zhang, J., Liu, J., Lei, C., & Huang, B. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.719215 · Cited by 14 · see citing works

Whole Genome Scan Uncovers Candidate Genes Related to Milk Production Traits in Barka Cattle

Ayalew, W., Wu, X., Tarekegn, G. M., Tessema, T. S., Naboulsi, R., Damme, R. V., Bongcam‐Rudloff, E., Edea, Z., Chu, M., Enquahone, S., et al. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25116142 · Cited by 12 · see citing works

Selection Increases Mitonuclear DNA Discordance but Reconciles Incompatibility in African Cattle

Shi, X., Ma, C., Chen, N., Xu, M., Kambal, S., Cai, Z., Yang, Q., Adeola, A. C., Liu, L.-S., Wang, J., et al. (2025) · Molecular Biology and Evolution · doi:10.1093/molbev/msaf039 · Cited by 12 · see citing works

Genetic Structure Analysis of 155 Transboundary and Local Populations of Cattle (Bos taurus, Bos indicus and Bos grunniens) Based on STR Markers

Solodneva, E. V., Svishcheva, G. R., Smolnikov, R., Bazhenov, S., Konorov, E. A., Mukhina, V., & Stolpovsky, Y. A. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24055061 · Cited by 12 · see citing works

Delineating a locus conferring Fusarium crown rot resistance on chromosome arm 1HL in barley by developing and analysing a large population derived from near isogenic lines

Gao, S., Zheng, Z., Hu, H., Jiang, Y., Liu, M., Stiller, J., Zhou, M., & Liu, C. (2020) · The Crop Journal · doi:10.1016/j.cj.2020.03.008 · Cited by 12 · see citing works

Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle

Cai, D., Kim, D., Zhang, N., Wang, X., Li, T., Li, J., Li, C., Lian, S., Shao, X., Hu, S., et al. (2025) · Science · doi:10.1126/science.adu9904 · Cited by 11 · see citing works

Insights into trait-association of selection signatures and adaptive eQTL in indigenous African cattle

Friedrich, J., Liu, S., Fang, L., Prendergast, J. G. D., & Wiener, P. (2024) · BMC Genomics · doi:10.1186/s12864-024-10852-8 · Cited by 11 · see citing works

Whole genome resequencing reveals the genetic contribution of Kazakh and Swiss Brown cattle to a population of Xinjiang Brown cattle

Chen, Q., Xu, L., Zhang, M., Zhang, T., Yan, M., Zhai, M., & Huang, X. (2022) · Gene · doi:10.1016/j.gene.2022.146725 · Cited by 11 · see citing works

Genome-wide diversity and admixture of five indigenous cattle populations from the Tigray region of northern Ethiopia

Zegeye, T., Belay, G., Vallejo‐Trujillo, A., Han, J., & Hanotte, O. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1050365 · Cited by 10 · see citing works

Exploring the genetic factors behind the discrepancy in resistance to bovine tuberculosis between African zebu cattle and European taurine cattle

Lee, S., Clémentine, C., & Kim, H. (2024) · Scientific Reports · doi:10.1038/s41598-024-52606-2 · Cited by 10 · see citing works

Genomic Reference Resource for African Cattle: Genome Sequences and High-Density Array Variants

Tijjani, A., Kambal, S., Terefe, E., Njeru, R., Ogugo, M., Ndambuki, G., Missohou, A., Traoré, A., Salim, B., Ezeasor, C., et al. (2024) · Scientific Data · doi:10.1038/s41597-024-03589-2 · Cited by 10 · see citing works

Genomic characterization of dryland adaptation in endangered Anxi cattle in China

Lyu, Y., Yao, T., Chen, Z., Huangfu, R., Cheng, H., Ma, W., Qi, X., Li, F., Chen, N., & Lei, C. (2024) · Animal Genetics · doi:10.1111/age.13416 · Cited by 9 · see citing works

Resilience and adaptation of indigenous cattle to harsh environments: a case study of the Muturu breed

Oke, O. E., Akosile, O. A., Oliyide, K. M., Ibigbami, D. J., Adeniran, D. A., Oni, A. I., Opowoye, I. O., & Oluwatosin, B. O. (2025) · Journal of Applied Animal Research · doi:10.1080/09712119.2025.2568562 · Cited by 9 · see citing works

Identification and Characterization of Copy Number Variations Regions in West African Taurine Cattle

Goyache, F., Pérez-Pardal, L., Fernández, I., Traoré, A., Menéndez‐Arias, N. A., Arias, K. D., & Álvarez, I. (2022) · Animals · doi:10.3390/ani12162130 · Cited by 9 · see citing works

Whole-genome resequencing provides insights into the diversity and adaptation to desert environment in Xinjiang Mongolian cattle

Xu, L., Zhou, K., Huang, X., Chen, H., Dong, H., & Chen, Q. (2024) · BMC Genomics · doi:10.1186/s12864-024-10084-w · Cited by 8 · see citing works

Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes ( Bubalus bubalis )

Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., et al. (2024) · Advanced Science · doi:10.1002/advs.202407615 · Cited by 8 · see citing works

Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response during infection by Trypanosoma congolense

Peylhard, M., Berthier, D., Dayo, G., Chantal, I., Sylla, S., Nidelet, S., Dubois, E., Martin, G., Sempéré, G., Flori, L., et al. (2023) · Peer Community Journal · doi:10.24072/pcjournal.239 · Cited by 8 · see citing works

Mapping restricted introgression across the genomes of admixed indigenous African cattle breeds

Friedrich, J., Bailey, R. I., Talenti, A., Chaudhry, U. N., Ali, Q., Obishakin, E., Ezeasor, C., Powell, J., Hanotte, O., Tijjani, A., et al. (2023) · Genetics Selection Evolution · doi:10.1186/s12711-023-00861-8 · Cited by 8 · see citing works

Evaluation of crossbreeding strategies for improved adaptation and productivity in African smallholder cattle farms

Vanvanhossou, S. F. U., Yin, T., Gorjanc, G., & König, S. (2025) · Genetics Selection Evolution · doi:10.1186/s12711-025-00952-8 · Cited by 8 · see citing works

The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression

Wang, X., Nursyifa, C., Aninta, S. G., Garcia‐Erill, G., Bertola, L. D., Khan, A., Kuja, J., Hanghøj, K., Meisner, J., Bøggild, T., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62692-z · Cited by 9 · see citing works

Evidence of early genomic selection in Holstein Friesian across African and European ecosystems

Gao, J., González-Prendes, R., Liu, Y., Kantanen, J., Ginja, C., Ghanem, N., Kugonza, D. R., Makgahlela, M. L., Bovenhuis, H., Groenen, M. A. M., et al. (2025) · BMC Genomics · doi:10.1186/s12864-025-11828-y · Cited by 6 · see citing works

Detection of selection signatures in indigenous African cattle reveals genomic footprints of adaptation, production and temperament traits

Okwasiimire, R., Kugonza, D. R., Gao, J., Weldenegodguad, M., Makgahlela, M. L., Ghanem, N., Ginja, C., Crooijmans, R. P. M. A., Kantanen, J., Uimari, P., et al. (2026) · Mammalian Genome · doi:10.1007/s00335-026-10193-9 · Cited by 6 · see citing works

Immune Response in Cattle Trypanosomosis and Trypanotolerance: Main Findings and Gaps

Somé, G. F., Séré, M., Somda, M. B., Dayo, G., Ouédraogo, G. A., Boulangé, A. F., Maarifi, G., Chantal, I., Berthier, D., & Thévenon, S. (2024) · Parasite Immunology · doi:10.1111/pim.13075 · Cited by 6 · see citing works

Admixture and selection offer insights for the conservation and breeding of Guyuan cattle

Liu, S., Yan, H., Feng, X., Luo, X., Lv, Y., Lei, C., Chen, N., & Ma, Y. (2025) · BMC Biology · doi:10.1186/s12915-025-02213-y · Cited by 6 · see citing works

Selective signatures in composite MONTANA TROPICAL beef cattle reveal potential genomic regions for tropical adaptation

dos Santos, C. A., Eler, J. P., Mattos, E. C., Espigolan, R., Giacomini, G., Ferraz, J. B. S., & Paim, T. D. P. (2024) · PLoS ONE · doi:10.1371/journal.pone.0301937 · Cited by 6 · see citing works

A novel SNP of TECPR2 gene associated with heat tolerance in Chinese cattle

Ma, X., Liu, Y., Sun, L., Hanif, Q., Qu, K., Liu, J., Zhang, J., Huang, B., & Lei, C. (2021) · Animal Biotechnology · doi:10.1080/10495398.2021.2011305 · Cited by 6 · see citing works

Genomic diversity of Cameroonian Gudali and Gudali-cross cattle

Matenchi, Y. P., & Hegarty, M. (2025) · Scientific Reports · doi:10.1038/s41598-025-99799-8 · Cited by 5 · see citing works

Meta-analysis of heritability estimates and genome-wide association for tick-borne haemoparasites in African cattle

Riggio, V., Madder, M., Labuschagné, M., Callaby, R., Zhao, R., Djikeng, A., Fourie, J., Prendergast, J. G. D., & Morrison, L. J. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1197160 · Cited by 5 · see citing works

Multimodal interactions in Stomoxys navigation reveal synergy between olfaction and vision

Getahun, M. N., Baleba, S. B. S., Ngiela, J., Ahuya, P. O., & Masiga, D. K. (2024) · Scientific Reports · doi:10.1038/s41598-024-68726-8 · Cited by 5 · see citing works

Analysis of genomic copy number variations through whole-genome scan in Yunling cattle

Dang, D., Zhang, L., Gao, L., Peng, L., Chen, J., & Yang, L. (2024) · Frontiers in Veterinary Science · doi:10.3389/fvets.2024.1413504 · Cited by 4 · see citing works

Genome‐wide analysis of genetic diversity and selection signatures in Fuzhou cattle

Wang, N., Li, Y., Li, X., Li, H., Bian, C., Chen, X., Jafari, H., Chen, N., & Lei, C. (2025) · Animal Genetics · doi:10.1111/age.70015 · Cited by 4 · see citing works

Most Beefalo cattle have no detectable bison genetic ancestryPreprint

Shapiro, B., Oppenheimer, J., Heaton, M. P., Kuhn, K. L., Green, R. E., Blackburn, H. D., & Smith, T. P. L. (2024) · eLife · doi:10.7554/elife.102750.1 · Cited by 4 · see citing works

High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing

Houaga, I., Bhati, M., Nziku, Z. C., Nguluma, A. S., Msuta, G., Ntanganedzeni, M., Nesengani, L. T., Ogugo, M., Sagbo, D. C. Y., Zorobouragui, L., et al. (2026) · Scientific Data · doi:10.1038/s41597-026-07589-2 · Cited by 4 · see citing works

The vision of big data recirculation for smart livestock farming in South Korea

Lee, S.-H., Lim, K., Lee, H., Heo, J.-Y., Kim, J., Kim, S.-H., Kim, S.-H., Park, J., Lim, D., Oh, J.-D., et al. (2025) · Journal of Animal Science and Technology · doi:10.5187/jast.2025.e21 · Cited by 3 · see citing works

Single-step genome-wide association study of milk somatic cell scores across multi-cattle breeds in Ethiopia

Chernet, T. F., Tarekegn, G. M., Ally, O. M., Meseret, S., Mrode, R., Negussie, E., Edea, Z., Gebreyohanes, G., Ekine-Dzivenu, C. C., Tera, A., et al. (2025) · Animal Biotechnology · doi:10.1080/10495398.2025.2586262 · Cited by 3 · see citing works

Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations

McHugo, G. P., Ward, J. A., Ng’ang’a, S. I., Frantz, L., Salter‐Townshend, M., Hill, E. W., O’Gorman, G. M., Meade, K. G., Hall, T. J., & MacHugh, D. E. (2024) · Heredity · doi:10.1038/s41437-024-00734-w · Cited by 3 · see citing works

Local Ancestry and Adaptive Introgression in Xiangnan Cattle

Yan, H., Li, J., Zhang, K., Duan, H., Sun, A., Zhang, B., Li, F., Chen, N., Lei, C., & Yi, K. (2024) · Biology · doi:10.3390/biology13121000 · Cited by 3 · see citing works

GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics

Summo, M., Comte, A., Martin, G., Perelle, P., Weitz, E. M., Droc, G., & Rouard, M. (2022) · Database · doi:10.1093/database/baac057 · Cited by 3 · see citing works

Genetic diversity and intraspecific mitochondrial DNA variations in the Georgian Mountain breed of Bos taurus reveal admixture, introgression and potential parallel vs. convergent evolution patterns

Basiladze, G., Tabatadze, L. V., Gabashvili, E., Osepashvili, M., Murtskhvaladze, M., & Kotetishvili, M. (2024) · Genetic Resources · doi:10.46265/genresj.hynz9140 · Cited by 2 · see citing works

Bovine Genome Database: new curated collection of selective sweeps in bovine populations across the world

Kambal, S., Walsh, A. T., Sivasankaran, S. K., Adossa, N. A., Skarlupka, J. H., Hanotte, O., Suen, G., & Elsik, C. G. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1214 · Cited by 2 · see citing works

A guide to network analysis, multi-omics integration, and applications in livestock microbiome research

Kinkpe, L., Solomon, A. I., Niu, Y., Goswami, N., Ikele, C. M.-C., Di, H. U., Abdessan, R., Zhigang, H., & Xia, W. (2025) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-025-04755-3 · Cited by 2 · see citing works

Genome-wide analysis reveals differential admixture dynamics and historical demographic contractions in African cattle

Mavunga, T. K., Sölkner, J., Mészáros, G., Pichler, R., Zorobouragui, L., TRAORE, A., Tapsoba, A. S. R., Hamed, H., Hassan, Y. A., Chileshe, B., et al. (2026) · Scientific Reports · doi:10.1038/s41598-026-36562-7 · Cited by 2 · see citing works

Pangenome variation analysis uncovers the impacts of SNP‐independent structural variations in modern European cattle breeding

Dai, S., Xu, L., Yang, L., Zhao, P., Li, X., Huang, W., Zhang, W., Dai, X., Li, Z., Peng, L., et al. (2026) · iMetaOmics. · doi:10.1002/imo2.70095 · Cited by 2 · see citing works

African cattle adaptations

Koch, L. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-00293-w · Cited by 2 · see citing works

Whole genome sequencing reveals signals of adaptive admixture in Creole cattlePreprint

Jemaa, S. B., Adam, G., Boussaha, M., Klopp, C., Mandonnet, N., & Navès, M. (2023) · doi:10.22541/au.167411887.77322425/v1 · Cited by 2 · see citing works

Meat animals, origin and domestication

Konarzewski, M. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-85125-1.00139-3 · Cited by 2 · see citing works

The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution

Liu, Y., Dao, W., Gao, R., Fan, X., Yang, R., & Miao, Y. (2026) · Animals · doi:10.3390/ani16050776 · Cited by 1 · see citing works

Genetic Diversity and Selection Signatures in Economically Important Traits of Ethiopian Indigenous Cattle Breed as a Base for Dairy Cattle Genetic Improvement: A Review

Tesfa, A., Alemayehu, K., Mebratie, W., Kerisew, B., & Taye, M. (2024) · Agricultural Reviews · doi:10.18805/ag.rf-281 · Cited by 1 · see citing works

Local Ancestry and Selection in the Genomes of Russian Black Pied Cattle

Igoshin, A. V., Yurchenko, A. A., Yudin, N. S., & Larkin, D. M. (2025) · Sci · doi:10.3390/sci7020051 · Cited by 1 · see citing works

Genomic Analysis of Indel and SV Reveals Functional and Adaptive Signatures in Hubei Indigenous Cattle Breeds

Shi, L., Zhang, P., Yu, B., Cheng, L., Liu, S., Liu, Q., Zhou, Y., Xiang, M., Zhao, P., & Chen, H. (2025) · Animals · doi:10.3390/ani15121755 · Cited by 1 · see citing works

The History, Geography, and Characteristics of Indigenous African Taurine Cattle

Rege, J. E. O., Tawah, C. L., Houaga, I., & Ibeagha-Awemu, E. M. (2025) · Sustainable development goals series · doi:10.1007/978-3-031-92076-9_3 · Cited by 1 · see citing works

The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity

Ge, F., Guo, Y., Xu, L., Low, W. Y., Ma, H., Li, Q., Wang, Z., Zhu, B., Xu, L., Gao, X., et al. (2025) · DNA Research · doi:10.1093/dnares/dsaf034 · Cited by 1 · see citing works

Major differences in the dynamics of haematological and biochemical variables between trypanotolerant and susceptible cattle during Trypanosoma congolense infection

Somé, G. F., Séré, M., Chantal, I., Somda, M. B., Dayo, G., Ouaré, M., Sakandé, H., Sempéré, G., Thévenon, S., & Berthier, D. (2025) · BMC Veterinary Research · doi:10.1186/s12917-025-05235-4 · Cited by 1 · see citing works

Whole-genome sequencing reveals genomic diversity and selection signatures for adaptation in South African Afrikaner and Bonsmara cattle

Alberts, D., van Marle-Köster, E., Joubert, F., & Berry, D. P. (2026) · Frontiers in Genetics · doi:10.3389/fgene.2026.1717538 · Cited by 1 · see citing works

Unscrambling the history of African indicine cattle genomes

Kassa, M., Woldekiros, H. S., Persichilli, C., Civita, M. D., Jemaa, S. B., Mastrangelo, S., Mwacharo, J. M., Hanotte, O., Pilla, F., & Senczuk, G. (2026) · iScience · doi:10.1016/j.isci.2026.115295 · Cited by 1 · see citing works

Distinct adaptation and ancestral retention signals in African and European indigenous cattle genomes

Gao, J., Ginja, C., Liu, Y., Kantanen, J., Ghanem, N., Kugonza, D. R., Makgahlela, M. L., Okwasiimire, R., Bovenhuis, H., Groenen, M. A. M., et al. (2026) · Communications Biology · doi:10.1038/s42003-026-09856-9 · Cited by 1 · see citing works

African Dairy Animals’ Genetic Diversity

Pastrana, C. I., Gaouar, S. B. S., Adoligbe, C. M., & Zibi, M. A. M. (2026) · Springer eBooks · doi:10.1007/978-3-032-15624-2_7 · Cited by 1 · see citing works

Runs of homozygosity reveal population dynamics and selection across global cattle

Ma, J., Liu, X., Gao, X., Wei, D., Zhang, Z., Muhammad, A., Chen, N., Xia, X., Ma, Y., Wang, E., et al. (2026) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-026-01403-0 · Cited by 1 · see citing works

Candidate genes and genomic regions relevant for adaptation to extreme climates in livestock

Cheruiyot, E. K., Negussie, E., Tarekegn, G. M., & Haile‐Mariam, M. (2025) · CABI Reviews · doi:10.1079/cabireviews.2025.0052 · Cited by 1 · see citing works

The distribution of a missense mutation in SDK1 gene across native Chinese breeds

Wan, P., Yang, X., Li, Y., Huang, B., & Cai, C. (2021) · Animal Biotechnology · doi:10.1080/10495398.2021.1974467 · Cited by 1 · see citing works

Integrative Population and Functional Genomics of Trypanotolerance in Hybrid African Cattle

McHugo, G. P. (2025) · Research Repository UCD (University College Dublin)

Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations

McHugo, G. P., Ward, J. A., Ng’ang’a, S. I., Frantz, L., Salter‐Townshend, M., Hill, E. W., O’Gorman, G. M., Meade, K. G., Hall, T. J., & MacHugh, D. E. (2024) · Heredity · doi:10.1038/s41437-024-00734-w · Cited by 3 · see citing works

Distinct adaptation and ancestral retention signals in African and European indigenous cattle genomes

Gao, J., Ginja, C., Liu, Y., Kantanen, J., Ghanem, N., Kugonza, D. R., Makgahlela, M. L., Okwasiimire, R., Bovenhuis, H., Groenen, M. A. M., et al. (2026) · Communications Biology · doi:10.1038/s42003-026-09856-9 · Cited by 1 · see citing works

A genomic history of African cattlePreprint

Frantz, L., Ng’ang’a, S. I., Ward, J. A., McHugo, G. P., Jones, M., Thalmann, O., Achukwi, M. D., Adeola, A. C., Biginagwa, T., Sow, R. S., et al. (2026) · Research Square · doi:10.21203/rs.3.rs-10317902/v1

African cattle adaptations

Koch, L. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-00293-w · Cited by 2 · see citing works