Cited by 354

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Rag GTPases mediate amino acid–dependent recruitment of TFEB and MITF to lysosomes

Martina, Jose A., Puertollano, Rosa·2013·Journal of Cell Biology

Abstract

The mTORC1 complex supports cell growth and proliferation in response to energy levels, growth factors, and nutrients. The Rag guanosine triphosphatases (GTPases) activate mTORC1 in response to amino acids by promoting its redistribution to lysosomes. In this paper, we identify a novel role for Rags in controlling activation of transcription factor EB (TFEB), a master regulator of autophagic and lysosomal gene expression. Interaction of TFEB with active Rag heterodimers promoted recruitment of TFEB to lysosomes, leading to mTORC1-dependent phosphorylation and inhibition of TFEB. The interaction of TFEB with Rags required the first 30 residues of TFEB and the switch regions of the Rags G domain. Depletion or inactivation of Rags prevented recruitment of TFEB to lysosomes, whereas expression of active Rags induced association of TFEB with lysosomal membranes. Finally, Rag GTPases bound and regulated activation of microphthalmia-associated transcription factor, suggesting a broader role for Rags in the control of gene expression. Our work provides new insight into the molecular mechanisms that link nutrient availability and TFEB localization and activation.

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Crossref · 10.1083/jcb.201209135

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  • The FLCN/FNIP complex is a critical regulator of TFEB and TFE3 activation; by promoting GDP-loading of RAGC, FLCN facilitates interaction of TFEB/TFE3 with RAGs, resulting in their retention in the cytosol.

    “The Folliculin (FLCN)/Folliculin-interacting protein (FNIP) complex is a critical regulator of TFEB and TFE3 activation. By promoting GDP-loading of RAGC27, FLCN facilitates interaction of TFEB/TFE3 with RAGs, resulting in retention of the transcription factors in the cytosol28,29.”

    From TMEM55B links autophagy flux, lysosomal repair, and TFE3 activation in response to oxidative stress (2024) · cites this paper as [28]

    The Results section (“TFEB interacts with active Rags,” page unavailable) shows that TFEB binds active Rag heterodimers containing GDP-bound RagC, and the Introduction says this binding enables phosphorylation and cytosolic retention. Our copy does not establish that FLCN/FNIP promotes RagC GDP-loading or facilitates that interaction, and it studies MITF rather than TFE3. (LLM, conf=0.86)

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Research works printed but not linked: 25

  1. Bronisz, 2006, Microphthalmia-associated transcription factor interactions with 14-3-3 modulate differentiation of committed myeloid precursors, Mol. Biol. Cell., 17, 3897, 10.1091/mbc.E06-05-0470 · DOI
  2. Cronin, 2009, Frequent mutations in the MITF pathway in melanoma, Pigment Cell Melanoma Res., 22, 435, 10.1111/j.1755-148X.2009.00578.x · DOI
  3. Gao, 2006, A conserved GTPase-containing complex is required for intracellular sorting of the general amino-acid permease in yeast, Nat. Cell Biol., 8, 657, 10.1038/ncb1419 · DOI
  4. Gong, 2011, Crystal structure of the Gtr1p-Gtr2p complex reveals new insights into the amino acid-induced TORC1 activation, Genes Dev., 25, 1668, 10.1101/gad.16968011 · DOI · Paper page
  5. Hah, 2012, Induction of melanogenesis by rapamycin in human MNT-1 melanoma cells, Ann. Dermatol., 24, 151, 10.5021/ad.2012.24.2.151 · DOI
  6. Hara, 2002, Raptor, a binding partner of target of rapamycin (TOR), mediates TOR action, Cell., 110, 177, 10.1016/S0092-8674(02)00833-4 · DOI
  7. Ho, 2011, WIPI1 coordinates melanogenic gene transcription and melanosome formation via TORC1 inhibition, J. Biol. Chem., 286, 12509, 10.1074/jbc.M110.200543 · DOI
  8. Hosokawa, 2009, Atg101, a novel mammalian autophagy protein interacting with Atg13, Autophagy., 5, 973, 10.4161/auto.5.7.9296 · DOI
  9. Jacinto, 2004, Mammalian TOR complex 2 controls the actin cytoskeleton and is rapamycin insensitive, Nat. Cell Biol., 6, 1122, 10.1038/ncb1183 · DOI
  10. Kim, 2002, mTOR interacts with raptor to form a nutrient-sensitive complex that signals to the cell growth machinery, Cell., 110, 163, 10.1016/S0092-8674(02)00808-5 · DOI
  11. Laplante, 2012, mTOR signaling in growth control and disease, Cell., 149, 274, 10.1016/j.cell.2012.03.017 · DOI · Paper page
  12. Martina, 2012, MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB, Autophagy., 8, 903, 10.4161/auto.19653 · DOI · Paper page
  13. Medina, 2011, Transcriptional activation of lysosomal exocytosis promotes cellular clearance, Dev. Cell., 21, 421, 10.1016/j.devcel.2011.07.016 · DOI
  14. Nojima, 2003, The mammalian target of rapamycin (mTOR) partner, raptor, binds the mTOR substrates p70 S6 kinase and 4E-BP1 through their TOR signaling (TOS) motif, J. Biol. Chem., 278, 15461, 10.1074/jbc.C200665200 · DOI
  15. Palmieri, 2011, Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways, Hum. Mol. Genet., 20, 3852, 10.1093/hmg/ddr306 · DOI · Paper page
  16. Roczniak-Ferguson, 2012, The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis, Sci. Signal., 5, ra42, 10.1126/scisignal.2002790 · DOI
  17. Sancak, 2008, The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1, Science., 320, 1496, 10.1126/science.1157535 · DOI · Paper page
  18. Sarbassov, 2004, Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton, Curr. Biol., 14, 1296, 10.1016/j.cub.2004.06.054 · DOI · Paper page
  19. Sardiello, 2009, Lysosomal enhancement: a CLEAR answer to cellular degradative needs, Cell Cycle., 8, 4021, 10.4161/cc.8.24.10263 · DOI
  20. Sardiello, 2009, A gene network regulating lysosomal biogenesis and function, Science., 325, 473, 10.1126/science.1174447 · DOI · Paper page
  21. Saucedo, 2003, Rheb promotes cell growth as a component of the insulin/TOR signalling network, Nat. Cell Biol., 5, 566, 10.1038/ncb996 · DOI
  22. Sekiguchi, 2001, Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B, J. Biol. Chem., 276, 7246, 10.1074/jbc.M004389200 · DOI
  23. Settembre, 2012, A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB, EMBO J., 31, 1095, 10.1038/emboj.2012.32 · DOI · Paper page
  24. Stocker, 2003, Rheb is an essential regulator of S6K in controlling cell growth in Drosophila, Nat. Cell Biol., 5, 559, 10.1038/ncb995 · DOI
  25. Yasumoto, 1998, A big gene linked to small eyes encodes multiple Mitf isoforms: many promoters make light work, Pigment Cell Res., 11, 329, 10.1111/j.1600-0749.1998.tb00491.x · DOI

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Metadata

Authors
Martina, J. A., & Puertollano, R.
Venue
Journal of Cell Biology
Published
2013-02-11
Volume
200
Issue
4
Pages
475-491
ISSN
  • 1540-8140
  • 0021-9525
Cited by
354
References
6
Language
en

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