The DOI matches its Crossref record; 13 of the 13 references it cites were found in a registry or an index.
GATOR1-dependent recruitment of FLCN–FNIP to lysosomes coordinates Rag GTPase heterodimer nucleotide status in response to amino acids
Abstract
Folliculin (FLCN) is a tumor suppressor that coordinates cellular responses to changes in amino acid availability via regulation of the Rag guanosine triphosphatases. FLCN is recruited to lysosomes during amino acid starvation, where it interacts with RagA/B as a heterodimeric complex with FLCN-interacting proteins (FNIPs). The FLCN–FNIP heterodimer also has GTPase-activating protein (GAP) activity toward RagC/D. These properties raised two important questions. First, how is amino acid availability sensed to regulate lysosomal abundance of FLCN? Second, what is the relationship between FLCN lysosome localization, RagA/B interactions, and RagC/D GAP activity? In this study, we show that RagA/B nucleotide status determines the FLCN–FNIP1 recruitment to lysosomes. Starvation-induced FLCN–FNIP lysosome localization requires GAP activity toward Rags 1 (GATOR1), the GAP that converts RagA/B to the guanosine diphosphate (GDP)-bound state. This places FLCN–FNIP recruitment to lysosomes under the control of amino acid sensors that act upstream of GATOR1. By binding to RagA/BGDP and acting on RagC/D, FLCN–FNIP can coordinate nucleotide status between Rag heterodimer subunits in response to changes in amino acid availability.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The FLCN complex acts as a GAP for RagC and RagD.
“The regulation of RagC and RagD is somewhat less well understood, but the FLCN complex has been shown to act as a GAP for these GTPases 174–177.”
From Targeting the biology of aging with mTOR inhibitors (2023) · cites this paper as [175]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
mTOR Signaling in Growth, Metabolism, and Disease
Saxton, R. A., & Sabatini, D. M. (2017) · Cell · doi:10.1016/j.cell.2017.02.004 · Cited by 7,555
Sancak, Y., Bar-Peled, L., Zoncu, R., Markhard, A. L., Nada, S., & Sabatini, D. M. (2010) · Cell · doi:10.1016/j.cell.2010.02.024 · Cited by 2,464
Regulation of TORC1 by Rag GTPases in nutrient response
Kim, E., Goraksha-Hicks, P., Li, L., Neufeld, T. P., & Guan, K.-L. (2008) · Nature Cell Biology · doi:10.1038/ncb1753 · Cited by 1,349
Sestrin2 is a leucine sensor for the mTORC1 pathway
Wolfson, R. L., Chantranupong, L., Saxton, R. A., Shen, K., Scaria, S. M., Cantor, J. R., & Sabatini, D. M. (2016) · Science · doi:10.1126/science.aab2674 · Cited by 1,306
Bar-Peled, L., Chantranupong, L., Cherniack, A. D., Chen, W. W., Ottina, K. A., Grabiner, B. C., Spear, E. D., Carter, S. L., Meyerson, M., & Sabatini, D. M. (2013) · Science · doi:10.1126/science.1232044 · Cited by 1,080 · cited 3×
“GAT OR1 is a heterotrimeric protein complex made up of NPRL2, NPRL3, and DEP DC5, whose GAP activity toward RagA/B is tightly controlled by amino acid availability via signals received from upstream amino acid sensors (Bar-Peled et al., 2013; Panchaud et al., 2013; Chantranupong et al., 2014, 2016; Parmigiani et al.,…”
BackgroundRagulator Is a GEF for the Rag GTPases that Signal Amino Acid Levels to mTORC1
Bar-Peled, L., Schweitzer, L. D., Zoncu, R., & Sabatini, D. M. (2012) · Cell · doi:10.1016/j.cell.2012.07.032 · Cited by 918 · cited 1×
“Conversely, the GEF activity of the pentameric Ragulator complex promotes exchange of GDP for GTP on RagA/B (Bar-Peled et al., 2012) and is thus expected to negatively regulate interactions of RagA/B with FLCN–FNIP.”
BackgroundThe CASTOR Proteins Are Arginine Sensors for the mTORC1 Pathway
Chantranupong, L., Scaria, S. M., Saxton, R. A., Gygi, M. P., Shen, K., Wyant, G. A., Wang, T., Harper, J. W., Gygi, S. P., & Sabatini, D. M. (2016) · Cell · doi:10.1016/j.cell.2016.02.035 · Cited by 843
Recruitment of folliculin to lysosomes supports the amino acid–dependent activation of Rag GTPases
Petit, C. S., Roczniak-Ferguson, A., & Ferguson, S. M. (2013) · Journal of Cell Biology · doi:10.1083/jcb.201307084 · Cited by 355
Self-citationAn Ancient, Unified Mechanism for Metformin Growth Inhibition in C. Elegans and Cancer
Wu, L., Zhou, B., Oshiro-Rapley, N., Li, M., Paulo, J. A., Webster, C. M., Mou, F., Kacergis, M. C., Talkowski, M. E., Carr, C. E., et al. (2016) · Cell · doi:10.1016/j.cell.2016.11.055 · Cited by 227
Architecture of the human GATOR1 and GATOR1–Rag GTPases complexes
Shen, K., Huang, R. K., Brignole, E. J., Condon, K. J., Valenstein, M. L., Chantranupong, L., Bomaliyamu, A., Choe, A., Hong, C., Yu, Z., et al. (2018) · Nature · doi:10.1038/nature26158 · Cited by 192
Crystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer
Nookala, R. K., Langemeyer, L., Pacitto, A., Ochoa-Montaño, B., Donaldson, J. C., Blaszczyk, B. K., Chirgadze, D. Y., Barr, F. A., Bazan, J. F., & Blundell, T. L. (2012) · Open Biology · doi:10.1098/rsob.120071 · Cited by 106
Structural basis for the assembly of the Ragulator-Rag GTPase complex
Yonehara, R., Nada, S., Nakai, T., Nakai, M., Kitamura, A., Ogawa, A., Nakatsumi, H., Nakayama, K. I., Li, S., Standley, D. M., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-01762-3 · Cited by 75
Péli-Gulli, M.-P., Raucci, S., Hu, Z., Dengjel, J., & De Virgilio, C. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.06.058 · Cited by 28
Flagged first, then by citations
Research works printed but not linked: 40
- Allaire, 2010, The Connecdenn DENN domain: a GEF for Rab35 mediating cargo-specific exit from early endosomes, Mol. Cell., 37, 370, 10.1016/j.molcel.2009.12.037 · DOI · Paper page
- Amick, 2016, C9orf72 binds SMCR8, localizes to lysosomes, and regulates mTORC1 signaling, Mol. Biol. Cell., 27, 3040, 10.1091/mbc.e16-01-0003 · DOI
- Baba, 2006, Folliculin encoded by the BHD gene interacts with a binding protein, FNIP1, and AMPK, and is involved in AMPK and mTOR signaling, Proc. Natl. Acad. Sci. USA., 103, 15552, 10.1073/pnas.0603781103 · DOI
- Baldassari, 2016, GATOR1 complex: the common genetic actor in focal epilepsies, J. Med. Genet., 53, 503, 10.1136/jmedgenet-2016-103883 · DOI · Paper page
- Bos, 2007, GEFs and GAPs: critical elements in the control of small G proteins, Cell., 129, 865, 10.1016/j.cell.2007.05.018 · DOI · Paper page
- Chantranupong, 2014, The Sestrins interact with GATOR2 to negatively regulate the amino-acid-sensing pathway upstream of mTORC1, Cell Reports., 9, 1, 10.1016/j.celrep.2014.09.014 · DOI · Paper page
- Cherfils, 2013, Regulation of small GTPases by GEFs, GAPs, and GDIs, Physiol. Rev., 93, 269, 10.1152/physrev.00003.2012 · DOI · Paper page
- Di Malta, 2017, Transcriptional activation of RagD GTPase controls mTORC1 and promotes cancer growth, Science., 356, 1188, 10.1126/science.aag2553 · DOI
- Gong, 2011, Crystal structure of the Gtr1p-Gtr2p complex reveals new insights into the amino acid-induced TORC1 activation, Genes Dev., 25, 1668, 10.1101/gad.16968011 · DOI · Paper page
- Hasumi, 2008, Identification and characterization of a novel folliculin-interacting protein FNIP2, Gene., 415, 60, 10.1016/j.gene.2008.02.022 · DOI
- Kim, 2015, Sestrin2 inhibits mTORC1 through modulation of GATOR complexes, Sci. Rep., 5, 9502, 10.1038/srep09502 · DOI
- Levine, 2013, The product of C9orf72, a gene strongly implicated in neurodegeneration, is structurally related to DENN Rab-GEFs, Bioinformatics., 29, 499, 10.1093/bioinformatics/bts725 · DOI · Paper page
- Lin, 2014, Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery, eLife., 3, e04766, 10.7554/eLife.04766 · DOI · Paper page
- Marat, 2011, DENN domain proteins: regulators of Rab GTPases, J. Biol. Chem., 286, 13791, 10.1074/jbc.R110.217067 · DOI
- Martina, 2013, Rag GTPases mediate amino acid-dependent recruitment of TFEB and MITF to lysosomes, J. Cell Biol., 200, 475, 10.1083/jcb.201209135 · DOI · Paper page
- Martina, 2014, The nutrient-responsive transcription factor TFE3 promotes autophagy, lysosomal biogenesis, and clearance of cellular debris, Sci. Signal., 7, ra9, 10.1126/scisignal.2004754 · DOI · Paper page
- Menon, 2014, Spatial control of the TSC complex integrates insulin and nutrient regulation of mTORC1 at the lysosome, Cell., 156, 771, 10.1016/j.cell.2013.11.049 · DOI · Paper page
- Nickerson, 2002, Mutations in a novel gene lead to kidney tumors, lung wall defects, and benign tumors of the hair follicle in patients with the Birt-Hogg-Dubé syndrome, Cancer Cell., 2, 157, 10.1016/S1535-6108(02)00104-6 · DOI
- Pacitto, 2015, Lst4, the yeast Fnip1/2 orthologue, is a DENN-family protein, Open Biol., 5, 150174, 10.1098/rsob.150174 · DOI · Paper page
- Panchaud, 2013, Amino acid deprivation inhibits TORC1 through a GTPase-activating protein complex for the Rag family GTPase Gtr1, Sci. Signal., 6, ra42, 10.1126/scisignal.2004112 · DOI · Paper page
- Parmigiani, 2014, Sestrins inhibit mTORC1 kinase activation through the GATOR complex, Cell Reports., 9, 1281, 10.1016/j.celrep.2014.10.019 · DOI · Paper page
- Péli-Gulli, 2015, Amino Acids Stimulate TORC1 through Lst4-Lst7, a GTPase-Activating Protein Complex for the Rag Family GTPase Gtr2, Cell Reports., 13, 1, 10.1016/j.celrep.2015.08.059 · DOI · Paper page
- Ran, 2013, Genome engineering using the CRISPR-Cas9 system, Nat. Protoc., 8, 2281, 10.1038/nprot.2013.143 · DOI · Paper page
- Richardson, 2016, Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA, Nat. Biotechnol., 34, 339, 10.1038/nbt.3481 · DOI · Paper page
- Roczniak-Ferguson, 2012, The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis, Sci. Signal., 5, ra42, 10.1126/scisignal.2002790 · DOI
- Sancak, 2008, The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1, Science., 320, 1496, 10.1126/science.1157535 · DOI · Paper page
- Schmidt, 2018, FLCN: The causative gene for Birt-Hogg-Dubé syndrome, Gene., 640, 28, 10.1016/j.gene.2017.09.044 · DOI
- Sekiguchi, 2001, Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B, J. Biol. Chem., 276, 7246, 10.1074/jbc.M004389200 · DOI
- Shen, 2017, Intersubunit Crosstalk in the Rag GTPase Heterodimer Enables mTORC1 to Respond Rapidly to Amino Acid Availability, Mol. Cell., 68, 552, 10.1016/j.molcel.2017.09.026 · DOI · Paper page
- Starling, 2016, Folliculin directs the formation of a Rab34-RILP complex to control the nutrient-dependent dynamic distribution of lysosomes, EMBO Rep., 17, 823, 10.15252/embr.201541382 · DOI · Paper page
- Stewart, 2003, Lentivirus-delivered stable gene silencing by RNAi in primary cells, RNA., 9, 493, 10.1261/rna.2192803 · DOI
- Su, 2017, Hybrid Structure of the RagA/C-Ragulator mTORC1 Activation Complex, Mol. Cell., 68, 835, 10.1016/j.molcel.2017.10.016 · DOI
- Takagi, 2008, Interaction of folliculin (Birt-Hogg-Dubé gene product) with a novel Fnip1-like (FnipL/Fnip2) protein, Oncogene., 27, 5339, 10.1038/onc.2008.261 · DOI
- Tsun, 2013, The folliculin tumor suppressor is a GAP for the RagC/D GTPases that signal amino acid levels to mTORC1, Mol. Cell., 52, 495, 10.1016/j.molcel.2013.09.016 · DOI · Paper page
- Wolfson, 2017, The Dawn of the Age of Amino Acid Sensors for the mTORC1 Pathway, Cell Metab., 26, 301, 10.1016/j.cmet.2017.07.001 · DOI
- Wu, 2011, Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate, Proc. Natl. Acad. Sci. USA., 108, 18672, 10.1073/pnas.1110415108 · DOI · Paper page
- Xia, 2016, Folliculin, a tumor suppressor associated with Birt-Hogg-Dubé (BHD) syndrome, is a novel modifier of TDP-43 cytoplasmic translocation and aggregation, Hum. Mol. Genet., 25, 83, 10.1093/hmg/ddv450 · DOI
- Yoshimura, 2010, Family-wide characterization of the DENN domain Rab GDP-GTP exchange factors, J. Cell Biol., 191, 367, 10.1083/jcb.201008051 · DOI · Paper page
- Zhang, 2012, Discovery of Novel DENN Proteins: Implications for the Evolution of Eukaryotic Intracellular Membrane Structures and Human Disease, Front. Genet., 3, 283, 10.3389/fgene.2012.00283 · DOI · Paper page
- Zhang, 2017, Structural basis for Ragulator functioning as a scaffold in membrane-anchoring of Rag GTPases and mTORC1, Nat. Commun., 8, 1394, 10.1038/s41467-017-01567-4 · DOI
Cited by
Sorted by citations
The lysosome as a cellular centre for signalling, metabolism and quality control
Lawrence, R. E., & Zoncu, R. (2019) · Nature Cell Biology · doi:10.1038/s41556-018-0244-7 · Cited by 920
Molecular mechanisms of dietary restriction promoting health and longevity
Green, C. L., Lamming, D. W., & Fontana, L. (2022) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-021-00411-4 · Cited by 714
Targeting the biology of aging with mTOR inhibitors
Mannick, J. B., & Lamming, D. W. (2023) · Nature Aging · doi:10.1038/s43587-023-00416-y · Cited by 372
Amino acid-dependent control of mTORC1 signaling: a variety of regulatory modes
Takahara, T., Amemiya, Y., Sugiyama, R., Maki, M., & Shibata, H. (2020) · Journal of Biomedical Science · doi:10.1186/s12929-020-00679-2 · Cited by 300
RAB7A phosphorylation by TBK1 promotes mitophagy via the PINK-PARKIN pathway
Heo, J.-M., Ordureau, A., Swarup, S., Paulo, J. A., Shen, K., Sabatini, D. M., & Harper, J. W. (2018) · Science Advances · doi:10.1126/sciadv.aav0443 · Cited by 199
Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3
Villegas, F., Lehalle, D., Mayer, D., Rittirsch, M., Stadler, M. B., Zinner, M., Olivieri, D., Vabres, P., Duplomb-Jego, L., De Bont, E. S. J. M., et al. (2019) · Cell Stem Cell · doi:10.1016/j.stem.2018.11.021 · Cited by 110
Iffland, P. H., Carson, V., Bordey, A., & Crino, P. B. (2019) · Epilepsia · doi:10.1111/epi.16370 · Cited by 84
WDR41 supports lysosomal response to changes in amino acid availability
Amick, J., Tharkeshwar, A. K., Amaya, & Ferguson, S. M. (2018) · Molecular Biology of the Cell · doi:10.1091/mbc.e17-12-0703 · Cited by 39
Self-citation
Metadata
- Authors
- Meng, J., & Ferguson, S. M.
- Affiliations
- Department of Cell Biology, Yale University School of Medicine, New Haven, CT 1
- Venue
- Journal of Cell Biology
- Publisher
- Rockefeller University Press
- Published
- 2018-05-30
- Volume
- 217
- Issue
- 8
- Pages
- 2765-2776
- ISSN
- 0021-9525
- 1540-8140
- PMC
- PMC6080935
- Cited by
- 75
- References
- 13
- Language
- en
- Funders
- National Institutes of Health (GM105718, AG047270)
- Ellison Medical Foundation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review