Quantitative analysis of the packaging capacity of recombinant adeno-associated virus
Abstract
Recombinant adeno-associated viruses (AAV) are among the most promising vectors for gene therapy of genetic diseases, including cystic fibrosis (CF). However, because of its small genome size, the capacity of AAV to package a therapeutic gene is limited. The efficiency of packaging the cystic fibrosis transmembrane conductance Regulator (CFTR) gene into AAV will be an important factor in determining whether recombinant AAV can be developed as a vector for transferring CFTR cDNA to the airway epithelia of patients with CF. Current understanding of the AAV biology suggests that AAV can package a genome slightly larger than the size of a wild-type genome. The precise range of the genome size and the efficiency of packaging have not been defined. Using a series of AAV vectors with progressively increasing genome size, we were able to analyze quantitatively the packaging efficiency in relation to the vector size and to determine the size limit for packaging. The packaging efficiencies of AAV vectors of variable sizes were determined directly by assaying DNA contents of viral particles, and indirectly by analyzing their efficiency in transfer of a chloramphenicol acetyltransferase (CAT) reporter gene into target cells. Our studies showed that the optimal size of AAV vector is between 4.1 and 4.9 kb. Although AAV can package a vector larger than its genome size, up to 5.2 kb, the packaging efficiencies in this large size range were sharply reduced. When the AAV genome size was smaller than 4.1 kb, the packaging efficiency was also suboptimal. In contrast, when the size of the genome was less than half the length of the wild-type genome, two copies of the vector were packaged into each virion, suggesting that the copy number control during packaging is a “head-full” mechanism. Because the length of the minimal cDNA of CFTR is about 4.5 kb, these results suggest it is possible to package the CFTR gene into AAV if the combined length of transcriptional elements and ITRs is kept under 500 bp. The results of this study are important for directing the design of AAV vectors for efficient gene transfer, as well as for a better understanding of the mechanism of AAV genome packaging. Adeno-associated virus (AAV) has been engineered as vectors to express genes of interest. The genome size of wild-type AAV is 4.6 kb. The total of size of the AAV vector influences the efficiency of its packaging into AAV virions. We have quantitatively determined the relationship of vector size to packaging efficiency by constructing 12 AAV vectors of different lengths. These vectors vary from 2 kb to 6 kb in size and carry a chloramphenicol acetyltransferase (CAT) reporter gene. The packaging efficiencies of these vectors were determined both by quantitating the DNA content of viral particles and assaying the efficiency of AAV virions in transferring CAT gene into HeLa cells. The results of our study demonstrate that the packaging efficiency of AAV is greatly affected by the length of the genome. AAV can package vectors ranging from 2 to 5.2 kb in size, but the optimal vector length for packaging is between 4.1 and 4.9 kb.
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The AAV vector system has a small DNA packaging limit (4.7-5 kb), which motivates the use of small recombinant promoters.
“The major restriction of the system is the small DNA packaging limit of 4.7 kb (Dong et al., 1996).”
From Recombinant Human Myelin-Associated Glycoprotein Promoter Drives Selective AAV-Mediated Transgene Expression in Oligodendrocytes (2016) · cites this paper as Dong et al., 1996
AAV has a strict size cutoff of 5.2 kb.
“other studies [6-8] indicated that intact genomes were not, in fact, packaged in that case [3], and further suggested a strict size cutoff of 5.2 kb.”
From Optimization of AAV expression cassettes to improve packaging capacity and transgene expression in neurons (2014) · cites this paper as [3]
AAV vectors have a relatively small maximal packaging capacity.
“However, the use of AAV vectors is limited by their relatively small maximal packaging capacity [3,4].”
From Optimization of AAV expression cassettes to improve packaging capacity and transgene expression in neurons (2014) · cites this paper as [3]
Dong et al. generated packaging constructs containing a completely recombinant genome encoding the chloramphenicol acetyltransferase gene, ranging in size from 1,918 to 6,019 bp.
“Dong et al. generated packaging constructs, containing a completely recombinant genome encoding the chloramphenicol acetyltransferase (CAT) gene, ranging in size from 1,918 to 6,019 bp (10).”
From Packaging Capacity of Adeno-Associated Virus Serotypes: Impact of Larger Genomes on Infectivity and Postentry Steps (2005) · cites this paper as [10]
The latter studies suggest that the optimum size of AAV2 vector genomes is between 4.1 and 4.9 kb.
“The latter studies suggest that the optimum size of AAV2 vector genomes is between 4.1 and 4.9 kb.”
From Packaging Capacity of Adeno-Associated Virus Serotypes: Impact of Larger Genomes on Infectivity and Postentry Steps (2005) · cites this paper as [10]
AAV vectors larger than 5.2 kb are packaged very inefficiently, and their transduction efficiencies are dramatically reduced.
“vectors larger than 5.2 kb were found to be packaged very inefficiently, and transduction efficiencies of these oversized vectors were dramatically reduced. 26”
From Expressing Transgenes That Exceed the Packaging Capacity of Adeno-Associated Virus Capsids (2016) · cites this paper as [26]
The optimum packaging size for AAV genomes is between 4.1 and 4.9 kb.
“The optimum packaging size for genomes was determined to be between 4.1 and 4.9 kb”
From Expressing Transgenes That Exceed the Packaging Capacity of Adeno-Associated Virus Capsids (2016) · cites this paper as [26]
rAAVs can package genomes ranging from 2 to 5.2 kb in size.
“Dong et al. 26 reported that rAAVs can package genomes ranging from 2 to 5.2 kb in size.”
From Expressing Transgenes That Exceed the Packaging Capacity of Adeno-Associated Virus Capsids (2016) · cites this paper as [26]
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- Authors
- Dong, J.-Y., Fan, P.-D., & Frizzell, R. A.
- Affiliations
- University of California, San Francisco (US)
- Corresponding author
- Dong, Jian-Yun
- ORCID
- Frizzell, Raymond A.
- Venue
- Human Gene Therapy
- Publisher
- SAGE Publications
- Published
- 1996-11-10
- Volume
- 7
- Issue
- 17
- Pages
- 2101-2112
- ISSN
- 1043-0342 (ISSN-L)
- 1557-7422
- OpenAlex
- W2051442157
- Semantic Scholar
- 8084d1cef626b24406cdffe2668a4e46c1c8cf70
- Cited by
- 583
- References
- 32
- Citations by year
- 2026: 29 · 2025: 26 · 2024: 40 · 2023: 32 · 2022: 31 · 2021: 25 · 2020: 29 · 2019: 22 · 2018: 21 · 2017: 19 · 2016: 11 · 2015: 21 · 2014: 10 · 2013: 16 · 2012: 21
- FWCI
- 4.41
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Human Gene Therapy (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Cystic Fibrosis Foundation
- National Institutes of Health (5r01hl046177-03, 5p30dk047766-05)
- National Institute of Diabetes and Digestive and Kidney Diseases (DK-47766, DK58029, R01 DK/HL46177)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Viral Infectious Diseases and Gene Expression in Insects
- Keywords
- adeno-associated virus, adeno-associated virus vectors, cystic fibrosis, CFTR gene, copy number control, inverted terminal repeats, chloramphenicol acetyltransferase reporter, gene therapy vectors, double-stranded DNA
- MeSH terms
- Dependovirus, Cells, Cultured, Cloning, Molecular, DNA, Viral, Genetic Vectors, HeLa Cells, Humans, Recombination, Genetic, Transfection, Blotting, Southern, Chloramphenicol O-Acetyltransferase, Genome, Viral, Genes, Reporter, Gene Transfer Techniques, Virus Assembly
About these checks
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