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Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Open access
Waterhouse, Andrew M., Procter, James B., Martin, David M. A., Clamp, Michèle, Barton, Geoffrey J.·2009·Bioinformatics

Abstract

Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk

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Metadata

Authors
Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M., & Barton, G. J.
Venue
Bioinformatics
Published
2009-01-16
Volume
25
Issue
9
Pages
1189-1191
ISSN
  • 1367-4803 (ISSN-L)
  • 1367-4811
OpenAlex
W2120772351
Cited by
10,235
References
0
FWCI
110.90
Type
journal article
Language
en
Open access
hybrid

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