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Jalview Version 2—a multiple sequence alignment editor and analysis workbench
Open accessAbstract
Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk
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Iacovelli, R., He, S., Sokolova, N., Lokhorst, I., Borg, M., Fodran, P., & Haslinger, K. (2024) · Journal of Natural Products · doi:10.1021/acs.jnatprod.4c00619 · Cited by 5
Ishii, M., Ludzia, P., Marcianò, G., Allen, W., Nerusheva, O. O., & Akiyoshi, B. (2022) · Molecular Biology of the Cell · doi:10.1091/mbc.e22-07-0269-t · Cited by 5
Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes
Almeida, M. V., Blumer, M., Yuan, C. U., Sierra, P., Price, J. L., Quah, F. X., Friman, A., Dallaire, A., Vernaz, G., Putman, A. L. K., et al. (2024) · doi:10.1101/2024.04.01.587621 · Cited by 5
TAF2 condensation in nuclear speckles links basal transcription factor TFIID to RNA splicing factors
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A random mutagenesis screen enriched for missense mutations in bacterial effector proteins
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The cell wall polymer initiates plasma membrane partitioning in mycobacteria
Kado, T., Akbary, Z., Motooka, D., Sparks, I. L., Melzer, E. S., Nakamura, S., Rojas, E. R., Morita, Y. S., & Siegrist, M. S. (2022) · doi:10.1101/2022.06.12.495848 · Cited by 16
Metadata
- Authors
- Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M., & Barton, G. J.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-01-16
- Volume
- 25
- Issue
- 9
- Pages
- 1189-1191
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2120772351
- Cited by
- 10,235
- References
- 0
- FWCI
- 110.90
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.