Guidelines for the design, analysis and interpretation of ‘omics’ data: focus on human endometrium

The sequence of the human genome

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The Sequence of the Human Genome

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Origins and Mechanisms of miRNAs and siRNAs

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Global variation in copy number in the human genome

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Dating the Endometrial Biopsy

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The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

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Metabonomics

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MicroRNA profiling: approaches and considerations

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Relief of microRNA-Mediated Translational Repression in Human Cells Subjected to Stress

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Time of Implantation of the Conceptus and Loss of Pregnancy

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Dating the endometrial biopsy

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Identification of an Intestinal Heme Transporter

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Gene Expression Analysis of Endometrium Reveals Progesterone Resistance and Candidate Susceptibility Genes in Women with Endometriosis

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Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine

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Expression Profiling of Endometrium from Women with Endometriosis Reveals Candidate Genes for Disease-Based Implantation Failure and Infertility

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Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

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A genomic diagnostic tool for human endometrial receptivity based on the transcriptomic signature

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A genome-wide perspective of genetic variation in human metabolism

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Revisiting Global Gene Expression Analysis

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Molecular Phenotyping of Human Endometrium Distinguishes Menstrual Cycle Phases and Underlying Biological Processes in Normo-Ovulatory Women

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The endometrial receptivity array for diagnosis and personalized embryo transfer as a treatment for patients with repeated implantation failure

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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

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Repeatability of published microarray gene expression analyses

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Microarrays, deep sequencing and the true measure of the transcriptome

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High-throughput classification of yeast mutants for functional genomics using metabolic footprinting

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Local injury to the endometrium doubles the incidence of successful pregnancies in patients undergoing in vitro fertilization

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Genome-wide patterns of population structure and admixture in West Africans and African Americans

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Endometrial Exosomes/Microvesicles in the Uterine Microenvironment: A New Paradigm for Embryo-Endometrial Cross Talk at Implantation

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Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

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A critical analysis of the accuracy, reproducibility, and clinical utility of histologic endometrial dating in fertile women

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Histological dating of timed endometrial biopsy tissue is not related to fertility status

Coutifaris, C., Myers, E. R., Guzick, D. S., Diamond, M. P., Carson, S. A., Legro, R. S., McGovern, P. G., Schlaff, W. D., Carr, B. R., Steinkampf, M. P., et al. (2004) · Fertility and Sterility · doi:10.1016/j.fertnstert.2004.03.069 · Cited by 343 · see citing works

Natural Selection of Human Embryos: Decidualizing Endometrial Stromal Cells Serve as Sensors of Embryo Quality upon Implantation

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The emerging science of epigenomics

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Genome-wide association meta-analysis identifies new endometriosis risk loci

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Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis

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Reprint of: Dating the Endometrial Biopsy

Rw, N., Hertig, A. T., & Rock, J. A. (2019) · Fertility and Sterility · doi:10.1016/j.fertnstert.2019.08.079 · Cited by 301 · see citing works

The accuracy and reproducibility of the endometrial receptivity array is superior to histology as a diagnostic method for endometrial receptivity

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Genomic Profiling of MicroRNAs and Messenger RNAs Reveals Hormonal Regulation in MicroRNA Expression in Human Endometrium1

Kuokkanen, S., Chen, B., Ojalvo, L., Benard, L., Santoro, N., & Pollard, J. W. (2010) · Biology of Reproduction · doi:10.1095/biolreprod.109.081059 · Cited by 288 · see citing works

Western Blots versus Selected Reaction Monitoring Assays: Time to Turn the Tables?

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Profiling microRNA expression with microarrays

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Functional MicroRNA Involved in Endometriosis

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In search of candidate genes critically expressed in the human endometrium during the window of implantation

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A genome-wide association study identifies genetic variants in the CDKN2BAS locus associated with endometriosis in Japanese

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MicroRNA expression profiling of eutopic secretory endometrium in women with versus without endometriosis

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Wide genomic analysis of human endometrial receptivity: new times, new opportunities

Horcajadas, J. A., Pellicer, A., & Simón, C. (2006) · Human Reproduction Update · doi:10.1093/humupd/dml046 · Cited by 247 · see citing works

The next wave in metabolome analysis

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Endometrial alterations in endometriosis: a systematic review of putative biomarkers

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Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision

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Endometrial secretion analysis identifies a cytokine profile predictive of pregnancy in IVF

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Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens

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Metabolomics and its application for non-invasive embryo assessment in IVF

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MicroRNAs are associated with human embryo implantation defects

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An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

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Molecular aspects of implantation failure

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Human cumulus cells as biomarkers for embryo and pregnancy outcomes

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Assessment of endometrial receptivity.

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Perivascular Human Endometrial Mesenchymal Stem Cells Express Pathways Relevant to Self-Renewal, Lineage Specification, and Functional Phenotype1

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Novel molecular profiles of endometrial cancer—new light through old windows

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Identification of new biomarkers of human endometrial receptivity in the natural cycle

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MicroRNAs miR-30b, miR-30d, and miR-494 Regulate Human Endometrial Receptivity

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Profiling the gene signature of endometrial receptivity: clinical results

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Potential biochemical markers of uterine receptivity

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Lipidomics is emerging

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Endometrial Stromal Cells of Women with Recurrent Miscarriage Fail to Discriminate between High- and Low-Quality Human Embryos

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Bioinformatics analysis of mass spectrometry‐based proteomics data sets

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Analysis of Fertility-Related Soluble Mediators in Human Uterine Fluid Identifies VEGF as a Key Regulator of Embryo Implantation

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Endometrial gene expression analysis at the time of embryo implantation in women with unexplained infertility

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Uterine receptivity to human embryonic implantation: Histology, biomarkers, and transcriptomics

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10 The implantation window

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Diagnostic and prognostic significance of miRNA signatures in tissues and plasma of endometrioid endometrial carcinoma patients

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Epigenetic regulation of endometrium during the menstrual cycle

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The genomics of the human endometrium

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Developments in Obesity Genetics in the Era of Genome-Wide Association Studies

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Effects of Ischemia on Gene Expression

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Biomarkers of endometriosis

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Society for Reproductive Biology Founders’ Lecture 2009. Preparing fertile soil: the importance of endometrial receptivity

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Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data

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Human chorionic gonadotrophin regulates FGF2 and other cytokines produced by human endometrial epithelial cells, providing a mechanism for enhancing endometrial receptivity

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Discovery of phosphatidylcholines and sphingomyelins as biomarkers for ovarian endometriosis

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2D-DiGE Analysis of the Human Endometrial Secretome Reveals Differences between Receptive and Nonreceptive States in Fertile and Infertile Women

Hannan, N. J., Stephens, A. N., Rainczuk, A., Hincks, C., Rombauts, L. J. F., & Salamonsen, L. A. (2010) · Journal of Proteome Research · doi:10.1021/pr1004828 · Cited by 136 · see citing works

Cytokine profiling in endometrial secretions: a non-invasive window on endometrial receptivity

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OMICS in assisted reproduction: possibilities and pitfalls

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Proteomic Analysis of Menstrual Blood

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Proteomic analysis of the human receptive versus non-receptive endometrium using differential in-gel electrophoresis and MALDI-MS unveils stathmin 1 and annexin A2 as differentially regulated

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Impact of chromosomal abnormalities on preimplantation embryo development

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The role of the endometrial receptivity array (ERA) in patients who have failed euploid embryo transfers

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Asynchronous and pathological windows of implantation: two causes of recurrent implantation failure†

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Mapping the entire functionally active endometrial microbiota

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miR-145 suppresses embryo-epithelial juxtacrine communication at implantation by modulating maternal IGF1R

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Proteomic Biomarkers for the Detection of Endometrial Cancer

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Endometrial MicroRNA Signature during the Window of Implantation Changed in Patients with Repeated Implantation Failure

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Endometrial receptivity and pregnancy outcome

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Human Endometrial Transcriptomics: Implications for Embryonic ImplantationPreprint

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Growth Hormone and Endometrial Receptivity

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Endocrinology Meets Metabolomics: Achievements, Pitfalls, and Challenges

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Metabolomic and Lipidomic Profiling Identifies The Role of the RNA Editing Pathway in Endometrial Carcinogenesis

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A Two-Cohort RNA-seq Study Reveals Changes in Endometrial and Blood miRNome in Fertile and Infertile Women

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Label-Free Proteomics Uncovers Energy Metabolism and Focal Adhesion Regulations Responsive for Endometrium Receptivity

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Diverse endometrial mRNA signatures during the window of implantation in patients with repeated implantation failure

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Omics and Artificial Intelligence to Improve In Vitro Fertilization (IVF) Success: A Proposed Protocol

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Activated Platelets Induce Estrogen Receptor β Expression in Endometriotic Stromal Cells

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Comparative proteomics reveal negative effects of gonadotropin-releasing hormone agonist and antagonist on human endometrium

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From global proteome profiling to single targeted molecules of follicular fluid and oocyte: contribution to embryo development and IVF outcome

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Proteomic Insights into Endometrial Receptivity and Embryo‐Endometrial Epithelium Interaction for Implantation Reveal Critical Determinants of Fertility

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Metabolomics for improving pregnancy outcomes in women undergoing assisted reproductive technologies

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Endometrial stromal cell proteome mapping in repeated implantation failure and recurrent pregnancy loss cases and fertile women

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Review of Endometrial Receptivity Array: A Personalized Approach to Embryo Transfer and Its Clinical Applications

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Effects of low doses of mifepristone on human embryo implantation process in a three-dimensional human endometrial in vitro co-culture system

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The mid-secretory endometrial transcriptomic landscape in endometriosis: a meta-analysis

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A systematic review of transcriptomic studies of the human endometrium reveals inconsistently reported differentially expressed genes

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The Contribution of Proteomics in Understanding Endometrial Protein Expression in Women with Recurrent Implantation Failure

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Essential Role of CRIM1 on Endometrial Receptivity in Goat

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Lipid metabolism-related genes as biomarkers and therapeutic targets reveal endometrial receptivity and immune microenvironment in women with reproductive dysfunction

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Exploring the design of clinical research studies on the efficacy mechanisms in type 2 diabetes mellitus

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Transcriptional and Epigenetic Response to Sedentary Behavior and Physical Activity in Children and Adolescents: A Systematic Review

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Mapping Human Uterine Disorders Through Single-Cell Transcriptomics

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Implantation Failure Is Associated With Increased α-Inhibin and β-Glycan Gene Expression in Secretory Phase Endometrium: Nested Case-Control Study of Infertile Women Undergoing IVF/Fresh Embryo Transfer

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An ultrasound-based deep learning radiomic model combined with clinical data to predict clinical pregnancy after frozen embryo transfer: a pilot cohort study

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Metabolomic Analysis Points to Bioactive Lipid Species and Acireductone Dioxygenase 1 (ADI1) as Potential Therapeutic Targets in Poor Prognosis Endometrial Cancer

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iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity

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circFAM120A participates in repeated implantation failure by regulating decidualization via the miR‐29 / ABHD5 axis

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OMICs Studies and Endometriosis Biomarker Identification

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Comparative Proteomic Analysis Reveals Metformin Improves the Expression of Biomarkers of Endometrial Receptivity in Infertile Women with Minimal/Mild Endometriosis

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DNA Repair Gene XRCC1 and XRCC4 Variations and Risk of Endometriosis: An Association Study

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Uterine Transcriptome: Understanding Physiology and Disease Processes

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OMICs Studies and Endometriosis Biomarker Identification

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Improving Replication in Endometrial Omics: Understanding the Influence of the Menstrual Cycle

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‘Omic’ high-throughput technologies in research on pathogenesis of endometriosis: a Review

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