Molecular Clocks Do Not Support the Cambrian Explosion
Open accessAbstract
The fossil record has long supported the view that most animal phyla originated during a brief period approximately 520 MYA known as the Cambrian explosion. However, molecular data analyses over the past 3 decades have found deeper divergences among animals (approximately 800 to 1,200 MYA), with and without the assumption of a global molecular clock. Recently, two studies have instead reported time estimates apparently consistent with the fossil record. Here, we demonstrate that methodological problems in these studies cast doubt on the accuracy and interpretations of the results obtained. In the study by Peterson et al., young time estimates were obtained because fossil calibrations were used as maximum limits rather than as minimum limits, and not because invertebrate calibrations were used. In the study by Aris-Brosou and Yang, young time estimates were obtained because of problems with rate models and other methods specific to the study, and not because Bayesian methods were used. This also led to many anomalous findings in their study, including a primate-rodent divergence at 320 MYA. With these results aside, molecular clocks continue to support a long period of animal evolution before the Cambrian explosion of fossils.
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Molecular clock studies have generally supported a deep pre-Ediacaran origin of animals and many of its major subgroups, but estimates of the precise timing vary widely.
“Although molecular clock studies have generally supported a deep pre-Ediacaran origin of animals and many of its major subgroups11–14, estimates of the precise timing vary widely8, 15.”
From Dating early animal evolution using phylogenomic data (2017) · cites this paper as [11]
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PAML: a program package for phylogenetic analysis by maximum likelihood
Yang, Z. (1997) · Computer applications in the biosciences · doi:10.1093/bioinformatics/13.5.555 · Cited by 5,344 · see citing works
A molecular timescale for vertebrate evolution
Kumar, S., & Hedges, S. B. (1998) · Nature · doi:10.1038/31927 · Cited by 1,936 · see citing works
Self-citationSanderson, M. J. (2003) · Bioinformatics · doi:10.1093/bioinformatics/19.2.301 · Cited by 1,906 · see citing works
Placental mammal diversification and the Cretaceous–Tertiary boundary
Springer, M. S., Murphy, W. J., Eduardo Eizirik, C., & O’Brien, S. J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0334222100 · Cited by 837 · see citing works
Benton, M. J. (1993) · Bristol Research (University of Bristol) · Cited by 668 · see citing works
The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
Douzery, E. J. P., Snell, E. A., Bapteste, E., Delsuc, F., & Philippe, H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403984101 · Cited by 638 · see citing works
Performance of a divergence time estimation method under a probabilistic model of rate evolution.
Kishino, H., Thorne, J. L., & Bruno, W. J. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003811 · Cited by 633 · cited 1× · see citing works
“…violates the eukaryote fossil record by underestimating divergence times for red algae (;925 MYA versus 1,200 MYA fossil), stramenopiles (;800 MYA versus 1,000 MYA fossil), and cholorophytan green algae (;730MYA versus 1,000MYA fossil) (Woods, Knoll, and German 1998; Butterfield 2000; Kumar 2001).”
BackgroundA molecular timescale of eukaryote evolution and the rise of complex multicellular life
Hedges, S. B., Blair, J. E., Venturi, M. L., & Shoe, J. L. (2004) · BMC Evolutionary Biology · doi:10.1186/1471-2148-4-2 · Cited by 578 · see citing works
Self-citationContinental breakup and the ordinal diversification of birds and mammals
Hedges, S. B., Parker, P. H., Sibley, C. G., & Kumar, S. (1996) · Nature · doi:10.1038/381226a0 · Cited by 529 · see citing works
Self-citationMolecular Evidence for Deep Precambrian Divergences Among Metazoan Phyla
Wray, G. A., Levinton, J. S., & Shapiro, L. H. (1996) · Science · doi:10.1126/science.274.5287.568 · Cited by 511 · see citing works
Cowles, G. S. (1987) · Cambridge University Press eBooks · doi:10.1017/cbo9780511735769.004 · Cited by 480 · see citing works
Estimating metazoan divergence times with a molecular clock
Peterson, K. J., Lyons, J. B., Nowak, K. S., Takacs, C. M., Wargo, M. J., & McPeek, M. A. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401670101 · Cited by 461 · see citing works
Gaunt, M. W., & Miles, M. A. (2002) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a004133 · Cited by 435 · see citing works
The colonization of land by animals: molecular phylogeny and divergence times among arthropods
Pisani, D., Poling, L. L., Lyons‐Weiler, M. A., & Hedges, S. B. (2004) · BMC Biology · doi:10.1186/1741-7007-2-1 · Cited by 291 · see citing works
Self-citationPrecision of molecular time estimates
Hedges, S. B., & Kumar, S. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.03.004 · Cited by 289 · see citing works
Self-citationSmall Bilaterian Fossils from 40 to 55 Million Years Before the Cambrian
Chen, J.-Y., Bottjer, D. J., Oliveri, P., Dornbos, S. Q., Gao, F., Ruffins, S., Chi, H., Li, C.-W., & Davidson, E. H. (2004) · Science · doi:10.1126/science.1099213 · Cited by 284 · see citing works
Aris-Brosou, S., & Yang, Z. (2002) · Systematic Biology · doi:10.1080/10635150290102375 · Cited by 230 · see citing works
Precision of molecular time estimates
BLAIRHEDGES, S. (2004) · Trends in Genetics · doi:10.1016/s0168-9525(04)00072-1 · Cited by 186 · see citing works
Aris-Brosou, S. (2003) · Molecular Biology and Evolution · doi:10.1093/molbev/msg226 · Cited by 164 · see citing works
An Early Cambrian tunicate from China
Shu, D., Chen, L., Han, J., & Zhang, X. L. (2001) · Nature · doi:10.1038/35078069 · Cited by 134 · see citing works
(2003) · CRC Press eBooks · doi:10.1201/b12432 · Cited by 130 · see citing works
Kumar, S. (2001) · Precambrian Research · doi:10.1016/s0301-9268(00)00093-0 · Cited by 89 · see citing works
The amino acid sequence of cytochrome c from Helix aspersa Müller (garden snail)
Brown, R. H., Richardson, M., Boulter, D., Ramshaw, J. A. M., & Jefferies, R. P. S. (1972) · Biochemical Journal · doi:10.1042/bj1280971 · Cited by 36 · see citing works
The origin and early evolution of chordates: molecular clocks and the fossil record
Donoghue, P. C. J., Smith, M. P., & Sannsom, I. (2003) · University of Birmingham Research Portal (University of Birmingham) · Cited by 34 · see citing works
Bones, molecules, and crown- tetrapod origins
Ruta, M., & Coates, M. I. (2003) · Bristol Research (University of Bristol) · doi:10.1201/b12432-17 · Cited by 10 · see citing works
Collins, A. G. (2000) · doi:10.1666/0094-8373(2000)026
Flagged first, then by citations
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A general comparison of relaxed molecular clock models
Lepage, T., Bryant, D., Philippe, H., & Lartillot, N. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm193 · Cited by 546 · see citing works
Molecular Phylogeny and Divergence Times of Deuterostome Animals
Blair, J. E., & Hedges, S. B. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi225 · Cited by 448 · see citing works
“…considerably younger divergence times among deuterostomes (Aris-Brosou and Yang 2002, 2003; Douzery et al. 2004) but suffer from methodological biases, causing their results to conflict with other well-supported aspects of the eukaryote fossil record (Blair and Hedges 2005; Ho et al. 2005).”
BackgroundSelf-citationRocks and clocks: calibrating the Tree of Life using fossils and molecules
Donoghue, P. C. J., & Benton, M. J. (2007) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2007.05.005 · Cited by 413 · see citing works
Molecular clocks: four decades of evolution
Kumar, S. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1659 · Cited by 405 · see citing works
Peterson, K. J., & Butterfield, N. J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503660102 · Cited by 361 · see citing works
Genomic view of the evolution of the complement system
Nonaka, M., & Kimura, A. (2006) · Immunogenetics · doi:10.1007/s00251-006-0142-1 · Cited by 284 · see citing works
“The current view of animal phylogeny and estimated divergence times among major animal groups based on the recent molecular clock analyses (Blair and Hedges 2005a,b; Hedges et al. 2004) is summarized in Fig.”
BackgroundOakley, T. H., Wolfe, J. M., Lindgren, A. R., & Zaharoff, A. K. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss216 · Cited by 265 · see citing works
Microbial carbonate abundance compared with fluctuations in metazoan diversity over geological time
Riding, R. (2006) · Sedimentary Geology · doi:10.1016/j.sedgeo.2005.12.015 · Cited by 262 · see citing works
Mángano, M. G., & Buatois, L. A. (2014) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2014.0038 · Cited by 243 · see citing works
Dating early animal evolution using phylogenomic data
Dohrmann, M., & Wörheide, G. (2017) · Scientific Reports · doi:10.1038/s41598-017-03791-w · Cited by 217 · see citing works
The Major Transitions in Evolution Revisited
(2011) · The MIT Press eBooks · doi:10.7551/mitpress/9780262015240.001.0001 · Cited by 220 · see citing works
Smith, A. B., Pisani, D., Mackenzie‐Dodds, J. A., Stockley, B., Webster, B. L., & Littlewood, D. T. J. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl039 · Cited by 203 · see citing works
“…the radiation of the metazoan phyla and on theMesozoic origins of birds and ofmammals (see Smith and Peterson 2002; Aris-Brosou and Yang 2003; Donoghue and Smith 2003; Peterson et al. 2004; Pisani et al. 2004; Blair and Hedges 2005; Ho et al. 2005; Peterson and Butterfield 2005; Welch et al. 2005).”
BackgroundDarwin's dilemma: the realities of the Cambrian ‘explosion’
Conway Morris, S. (2006) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2006.1846 · Cited by 179 · see citing works
“Such confidence was very largely based on divergence dates derived from molecular ‘clocks’ (e.g. Wray et al. 1996; Blair & Hedges 2005).”
Roger, A. J., & Hug, L. A. (2006) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2006.1845 · Cited by 180 · see citing works
“As discussed earlier, it is common in phylogenetic analysis of multiple gene data to simply concatenate genes together into one large alignment and treat this as if it were a single gene (e.g. Douzery et al. 2004; Blair & Hedges 2005; Peterson & Butterfield 2005).”
BackgroundKawasaki, K., & Weiss, K. M. (2005) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.21088 · Cited by 166 · see citing works
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
Berney, C., & Pawlowski, J. (2006) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2006.3537 · Cited by 212 · see citing works
“In spite of recent criticisms (Blair & Hedges 2005), the maximum age limits used by Douzery et al. (2004) were apparently not too constraining, as the dates inferred in our time-scale are largely congruent with their estimations.”
ResultCowman, P. F., Bellwood, D. R., & van Herwerden, L. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.05.015 · Cited by 150 · see citing works
“The use of a strict molecular clock in such studies has been a highly controversial topic among evolutionary biologists (Blair and Hedges, 2005; Emerson, 2007; Sanderson, 2003, 2002).”
BackgroundThe impact of fossils and taxon sampling on ancient molecular dating analyses
Hug, L. A., & Roger, A. J. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm115 · Cited by 144 · see citing works
The Biological Big Bang model for the major transitions in evolution
Koonin, E. V. (2007) · Biology Direct · doi:10.1186/1745-6150-2-21 · Cited by 115 · see citing works
“Although molecular clock analysis has been invoked to propose that the Cambrian explosion is an artifact of the fossil record whereas the actual divergence occurred much earlier [36,37], the reliability of these estimates appears to be questionable [38].”
BackgroundThe Ediacaran microbiota and the survival of Snowball Earth conditions
Moczydłowska, M. (2008) · Precambrian Research · doi:10.1016/j.precamres.2008.06.008 · Cited by 109 · see citing works
“…might have been around before the Cryogenian (Doolittle et al., 1996; Fedonkin, 1996; McNamara, 1996; Wray et al., 1996; Wang et al., 1999; Runnegar, 2000; Blair and Hedges, 2004; Douzery et al., 2004; Hedges et al., 2004; Pisani et al., 2004; Yoon et al., 2004; Peterson and Butterfield, 2005).”
BackgroundThe telomere repeat motif of basal Metazoa
Traut, W., Szczepanowski, M., Zrzavá, M., Opitz, C., Marec, F., & Zrzavý, J. (2007) · Chromosome Research · doi:10.1007/s10577-007-1132-3 · Cited by 104 · see citing works
“This indicated that it was ancestral at least for Bilateria (i.e. at least 600 My old; for discussion of differing molecular estimates of divergence time see Blair & Hedges 2005).”
Aguirre, J., Perfectti, F., & Braga, J. C. (2010) · Paleobiology · doi:10.1666/09041.1 · Cited by 96 · see citing works
“Further, a poor fossil record (incomplete and/or of low quality) and difficulties in the satisfactory taxonomic identification of fossil taxa have been used as arguments to discredit fossils as accurate tools for dating evolutionary events (Patterson 1981; Hedges et al. 1996; Blair and Hedges 2005).”
MethodSteroid receptors and vertebrate evolution
Baker, M. E. (2019) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2019.110526 · Cited by 94 · see citing works
PETERSON, K. J., SUMMONS, R. E., & DONOGHUE, P. C. J. (2007) · Palaeontology · doi:10.1111/j.1475-4983.2007.00692.x · Cited by 93 · see citing works
“Nonetheless, the accuracy of this molecular clock, which has been questioned by some (e.g. Blair and Hedges 2005), can be assessed independent of these ecological arguments, by returning to the direct fossil record of animals themselves.”
BackgroundBattistuzzi, F. U., Filipski, A., Hedges, S. B., & Kumar, S. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq014 · Cited by 89 · see citing works
“A case in point is the timing of origin of animal phyla recorded in theCambrianexplosionwheremolecularclockestimatesfordivergencesareoftenmucholderthanpaleontologicalesti-mates(Wrayetal.1996;SmithandPeterson2002;Hedges et al. 2004; Blair and Hedges 2005; Peterson et al. 2008).”
BackgroundMethodSelf-citationWillman, S., & Moczydłowska, M. (2007) · Precambrian Research · doi:10.1016/j.precamres.2007.10.010 · Cited by 89 · see citing works
Wheat, C. W., & Wahlberg, N. (2013) · Systematic Biology · doi:10.1093/sysbio/sys074 · Cited by 80 · see citing works
Cartwright, P., & Collins, A. G. (2007) · Integrative and Comparative Biology · doi:10.1093/icb/icm071 · Cited by 84 · see citing works
“Some studies using molecular clock estimations support this view (Wray et al. 1996; Blair and Hedges 2005 ) and hypotheses were put forth regarding early metazoans as tiny larvae-like forms with little fossilization potential (Davidson et al. 1995).”
ResultMángano, M. G., & Buatois, L. A. (2016) · Topics in geobiology · doi:10.1007/978-94-017-9600-2_3 · Cited by 81 · see citing works
Coghlan, A. (2005) · WormBook · doi:10.1895/wormbook.1.15.1 · Cited by 74 · see citing works
“…to uncertainties in the date of divergence of nematodes from other animals (estimates range from 600-1300 million years ago: Benton and Ayala, 2003; Blair and Hedges, 2005; Hedges et al., 2004; Peterson et al., 2004), and in the relationship of nematodes to other animals (Philip et al., 2005;…”
BackgroundThe oldest echinoderm faunas from Gondwana show that echinoderm body plan diversification was rapid
Smith, A. B., Zamora, S., & Álvaro, J. J. (2013) · Nature Communications · doi:10.1038/ncomms2391 · Cited by 74 · see citing works
“Strata with main fossil echinoderm faunas are numbered and are as follows: (1) Poleta Formation; (2) Latham Shale Formation; (3) Kinzers Formation; (4) Various Drumian-aged formations, including the Marjum Formation, and Burgess Shale Formation; (5) Issafen Formation; (6) Jbel Wawrmast Formation (Brèche à Micmacca Mem…”
MethodChernikova, D., Motamedi, S., Csürös, M., Koonin, E. V., & Rogozin, I. B. (2011) · Biology Direct · doi:10.1186/1745-6150-6-26 · Cited by 72 · see citing works
“These younger dates have been subsequently questioned on methodological grounds [59].”
BackgroundSiveter, D. J. (2008) · Senckenbergiana lethaea · doi:10.1007/bf03043973 · Cited by 71 · see citing works
The Paleoproterozoic megascopic Stirling biota
Bengtson, S., Rasmussen, B., & Krapež, B. (2007) · Paleobiology · doi:10.1666/04040.1 · Cited by 69 · see citing works
“…have given notoriously variable results, some of which would allow even for crown-group animals to exist around 1.2 Ga (Wray et al. 1996; Wang et al. 1999; Otsuka and Sugaya 2003; Blair and Hedges 2005), which is the age of metamorphism of the Stirling Range Formation (Rasmussen et al. 2002a).”
BackgroundInfluentialPérez‐Portela, R., Bishop, J., Davis, A. R., & Turón, X. (2008) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2008.11.014 · Cited by 63 · see citing works
“New phylogenomic approaches have recently overturned conventional thinking about the relationships within chordates (Philippe et al., 2005; Bourlat et al., 2006; Delsuc et al., 2006; Dunn et al., 2008; Blair and Hedges, 2005).”
BackgroundEvolutionary sequence analysis of complete eukaryote genomes
Blair, J. E., Shah, P., & Hedges, S. B. (2005) · BMC Bioinformatics · doi:10.1186/1471-2105-6-53 · Cited by 55 · see citing works
“Possible reasons for their inconsistency are discussed elsewhere [41].”
BackgroundSelf-citationMolecular clocks and the early evolution of metazoan nervous systems
Wray, G. A. (2015) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2015.0046 · Cited by 51 · see citing works
Arthropod molecular divergence times and the Cambrian origin of pentastomids
Sanders, K. L., & Lee, M. S. Y. (2010) · Systematics and Biodiversity · doi:10.1080/14772000903562012 · Cited by 51 · see citing works
A New Conulariid (Cnidaria, Scyphozoa) From the Terminal Ediacaran of Brazil
Leme, J. D. M., Iten, H. V., & Simões, M. G. (2022) · Frontiers in Earth Science · doi:10.3389/feart.2022.777746 · Cited by 45 · see citing works
“If in fact there was such an event (Blair and Hedges, 2005; Wood et al., 2019), then conulariids were around well before it started, and they were an order of magnitude larger than early Cambrian small shelly fossils.”
BackgroundA merciful death for the “earliest bilaterian,” Vernanimalcula
Bengtson, S., Cunningham, J. A., Yin, C., & Donoghue, P. C. J. (2012) · Evolution & Development · doi:10.1111/j.1525-142x.2012.00562.x · Cited by 40 · see citing works
Battistuzzi, F. U., Billing-Ross, P., Murillo, O., Filipski, A., & Kumar, S. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv075 · Cited by 34 · see citing works
“Letter”
The Precambrian emergence of animal life: a geobiological perspective
Gaidos, E. J., DuBuc, T. Q., Dunford, M. D., MCANDREW, P., PADILLA‐GAMIÑO, J., STUDER, B., Weersing, K., & Stanley, S. M. (2007) · Geobiology · doi:10.1111/j.1472-4669.2007.00125.x · Cited by 38 · see citing works
“Blair & Hedges (2005a) pointed out that these calculations also produce other divergence times that violate the fossil record, and Welch et al .”
BackgroundMethodInfluentialHemichordata (Pterobranchia, Enteropneusta) and the fossil record
Maletz, J. (2013) · Palaeogeography Palaeoclimatology Palaeoecology · doi:10.1016/j.palaeo.2013.06.010 · Cited by 37 · see citing works
The transition to experiencing II. The evolution of associative learning based on feelings.
Ginsburg, S., & Jablonka, E. (2007) · Biological Theory · doi:10.1162/biot.2007.2.3.231 · Cited by 47 · see citing works
“[1999] and Blair and Hedges [2005] for arguments for a pre-Cambrian origin of animal phyla, and Rokas et al.”
BackgroundDeveloping ecospheres on transiently habitable planets: the genesis project
Gros, C. (2016) · Astrophysics and Space Science · doi:10.1007/s10509-016-2911-0 · Cited by 33 · see citing works
“Only in the second part of the following about 1.3 Ga, the ‘boring billion’ (Roberts 2013), animal phyla started to diverge measurably (Blair and Hedges 2005).”
BackgroundInfluentialHerculano‐Houzel, S., & Santos, S. D. (2018) · Neuroglia · doi:10.3390/neuroglia1010014 · Cited by 29 · see citing works
Genome Biology of the Cyclostomes and Insights into the Evolutionary Biology of Vertebrate Genomes
Smith, J. J., Saha, N., & Amemiya, C. T. (2010) · Integrative and Comparative Biology · doi:10.1093/icb/icq023 · Cited by 30 · see citing works
Gostling, N. J., Thomas, C., Greenwood, J. M., Dong, X., Bengtson, S., Raff, E. C., Raff, R. A., Degnan, B. M., Stampanoni, M., & Donoghue, P. C. J. (2008) · Evolution & Development · doi:10.1111/j.1525-142x.2008.00242.x · Cited by 29 · see citing works
“inferences nearing 1000Ma have also been reported (Blair and Hedges 2005).”
BackgroundThe Cambrian Explosion: How Do We Use the Evidence
Levinton, J. S. (2008) · BioScience · doi:10.1641/b580912 · Cited by 23 · see citing works
“Blair and Hedges (2005) reconsidered this most juvenile of Cambrian bilaterian divergence estimates and found that they mostly derived from a selection of fossil calibrations that biases results toward slower rates of divergence, and not toward different rates of molecular divergence between…”
BackgroundCritiquing blind dating: the dangers of over-confident date estimates in comparative genomics
Wheat, C. W., & Wahlberg, N. (2013) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2013.07.007 · Cited by 21 · see citing works
The genetic response to Snowball Earth: role of HSP90 in the Cambrian explosion
Baker, M. E. (2006) · Geobiology · doi:10.1111/j.1472-4669.2006.00067.x · Cited by 19 · see citing works
Phylochronology of early metazoans: combined evidence from molecular and fossil data
Qun, Y., Ma, J., Xiaoyan, S., & Peiyun, C. (2007) · Geological Journal · doi:10.1002/gj.1074 · Cited by 20 · see citing works
“…studies show that estimates for bilaterian divergences tend to concentrate roughly between 900 and 600Ma (Figure 1B), conspicuous discrepancies between molecular estimates and the fossil record of early metazoans still persist (Figure 1 and Table 1) (also see Blair and Hedges 2005; Bromham 2006).”
BackgroundInfluentialMolecular Timescale of Evolution in the Proterozoic
Hedges, S. B., Battistuzzi, F. U., & Blair, J. E. (2007) · Springer eBooks · doi:10.1007/1-4020-5202-2_7 · Cited by 15 · see citing works
“Most recent molecular clock analyses (e.g., Douzery et al., 2004; Hedges et al., 2004; Blair and Hedges, 2005a; Blair et al., 2005) have used sequences concatenated from multiple genes, thus avoiding potential statistical biases from averaging multiple single-gene estimates (the "mean of the…”
BackgroundResultInfluentialSelf-citationModelling the Transport of Nutrients in Early Animals
Beaumont, N. J. (2009) · Evolutionary Biology · doi:10.1007/s11692-008-9047-2 · Cited by 14 · see citing works
“This model is consistent with a relatively early divergence of phyla, which is consistent with a number of studies based upon molecular data ( Blair and Hedges 2005 ).”
ResultEukaryotization of the early biosphere: A biogeochemical aspect
Fedonkin, M. A. (2009) · Geochemistry International · doi:10.1134/s0016702909130011 · Cited by 14 · see citing works
Ediacaran Fossils in Meso- and Paleoproterozoic Rocks in Peninsular India Extend Darwin
Basu, A. (2009) · Journal of the Geological Society of India · doi:10.1007/s12594-009-0036-6 · Cited by 11 · see citing works
Macroevolution, Minimalism, and the Radiation of the Animals
Sterelny, K. (2007) · Cambridge University Press eBooks · doi:10.1017/ccol9780521851282.010 · Cited by 11 · see citing works
“9 The defenders of the deep dates dispute this, arguing that the (relatively) recent divergence times estimated by Peterson and co depend not on the choice of calibration taxa, but on treating the fossil dates as the maximum age of divergence, as if the first appearance of a fossil in the record was the first appearan…”
BackgroundBaker, M. E. (2006) · Integrative and Comparative Biology · doi:10.1093/icb/icl019 · Cited by 10 · see citing works
“The glaciations that ended about 630 myr and 580 myr ago are either close to or overlap at the time when invertebrates and chordates have been proposed to have diverged from their common ancestor (Ayala et al., 1998; Blair and Hedges, 2004; Benton and Ayala, 2003; Peterson and Butterfield, 2005).”
BackgroundEvolutionary History of the Chaetognaths Inferred from Actin and 18S-28S rRNA Paralogous Genes
Barthélémy, R.-M., PETENIAN, F., Vannier, J., Casanova, J.-P., & Faure, É. (2006) · International Journal of Zoological Research · doi:10.3923/ijzr.2006.284.300 · Cited by 7 · see citing works
Evolutionary trajectory of TRPM2 channel activation by adenosine diphosphate ribose and calcium
Ma, C., Luo, Y., Zhang, C., Cheng, C., Hua, N., Liu, X., Wu, J., Qin, L., Yu, P., Luo, J., et al. (2024) · 中国科学通报:英文版 · doi:10.1016/j.scib.2024.04.052 · Cited by 4 · see citing works
Bromham, L. D. (2011) · The MIT Press eBooks · doi:10.7551/mitpress/9780262015240.003.0014 · Cited by 4 · see citing works
Mángano, M. G., & Buatois, L. A. (2020) · Elsevier eBooks · doi:10.1016/b978-0-08-102908-4.00142-9 · Cited by 4 · see citing works
Croizat’s form-making, RNA networks, and biogeography
Mahlfeld, K., & Parenti, L. R. (2023) · History & Philosophy of the Life Sciences · doi:10.1007/s40656-023-00597-0 · Cited by 3 · see citing works
“…absolute time scale to a molecular tree is calibration based on the assumed maximum age of fossils, regardless of the criticisms this method has received (e.g., Blair & Hedges, 2005; Nelson & Ladiges, 2009; Wilke et al., 2009; Heads, 2012a; Wang & Mao, 2015; Wilf & Escapa, 2015; Klopftstein, 2021).”
MethodGaidos, E. J. (2010) · Science Publishers eBooks · doi:10.1201/b10425-19 · Cited by 3 · see citing works
Critical Intervals in Earth History
Wiese, F., & Joachim Reitner, A. (2011) · Encyclopedia of earth sciences series/Encyclopedia of earth sciences · doi:10.1007/978-1-4020-9212-1_62 · Cited by 2 · see citing works
Sarkar, S., & Banerjee, S. (2019) · Springer geology · doi:10.1007/978-981-32-9551-3_1 · Cited by 2 · see citing works
Vickers-Rich, P. (2007) · Geological Society London Special Publications · doi:10.1144/sp286.38 · Cited by 1 · see citing works
“…organisms, despite the uncertainty of their relationships with crown groups of today, combined with the data provided by molecular studies (e.g. Blair & Hedges 2004; Hedges et al. 2004), in spite of lack of agreement on dates, clearly indicate that complex metazoans were present before this…”
BackgroundReconstruint Darwin, cent cinquanta anys després
Fontdevila, A. (2009) · Estudis Romànics (Institut d'Estudis Catalans)
Steroid Receptors and Vertebrate EvolutionPreprint
Baker, M. E. (2019) · doi:10.32942/osf.io/kpdfq
The genetic response to Snowball Earth: role of HSP90 in the Cambrian explosion
BAKER, M. (2008) · SciVee · doi:10.4016/7077.01
The genetic response to Snowball Earth: role of HSP90 in the Cambrian explosion
BAKER, M. (2008) · SciVee · doi:10.4016/7077.03
Steroid Receptors and Vertebrate EvolutionPreprint
Baker, M. E. (2019) · doi:10.32942/osf.io/xct2w
Wheat, C. W., & Wahlberg, N. (2012) · Data Archiving and Networked Services (DANS) · doi:10.5061/dryad.3r4j45d2.1
- Authors
- Blair, J. E., & Hedges, S. B.
- Affiliations
- Pennsylvania State University (US)
- Corresponding author
- Blair, Jaime E.
- Venue
- Molecular Biology and Evolution
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-11-10
- Volume
- 22
- Issue
- 3
- Pages
- 387-390
- ISSN
- 0737-4038 (ISSN-L)
- 1537-1719
- OpenAlex
- W2160354623
- Cited by
- 73
- References
- 26
- Citations by year
- 2024: 1 · 2023: 2 · 2022: 1 · 2020: 1 · 2019: 4 · 2018: 1 · 2017: 1 · 2016: 2 · 2015: 2 · 2014: 1 · 2013: 3 · 2012: 4
- FWCI
- 8.42
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Molecular Biology and Evolution (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation
- National Aeronautics and Space Administration
- NASA Astrobiology Institute
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- molecular clock, Cambrian explosion, divergence time estimation, fossil calibration, rate model, animal evolution
- MeSH terms
- Animals, Models, Genetic, Phylogeny, Evolution, Molecular
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