miRNATissueAtlas2: an update to the human miRNA tissue atlas
Open accessAbstract
Small non-coding RNAs (sncRNAs) are pervasive regulators of physiological and pathological processes. We previously developed the human miRNA Tissue Atlas, detailing the expression of miRNAs across organs in the human body. Here, we present an updated resource containing sequencing data of 188 tissue samples comprising 21 organ types retrieved from six humans. Sampling the organs from the same bodies minimizes intra-individual variability and facilitates the making of a precise high-resolution body map of the non-coding transcriptome. The data allow shedding light on the organ- and organ system-specificity of piwi-interacting RNAs (piRNAs), transfer RNAs (tRNAs), microRNAs (miRNAs) and other non-coding RNAs. As use case of our resource, we describe the identification of highly specific ncRNAs in different organs. The update also contains 58 samples from six tissues of the Tabula Muris collection, allowing to check if the tissue specificity is evolutionary conserved between Homo sapiens and Mus musculus. The updated resource of 87 252 non-coding RNAs from nine non-coding RNA classes for all organs and organ systems is available online without any restrictions (https://www.ccb.uni-saarland.de/tissueatlas2).
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MiR-128-3p – a gray eminence of the human central nervous system
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AmiCa: Atlas of miRNA-gene correlations in cancer
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Circulating Small RNA Profiling of Patients with Alveolar and Cystic Echinococcosis
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Exploring miRNA Biomarkers in Major Depressive Disorder: A Molecular Medicine Perspective
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Differential microRNA editing may drive target pathway switching in human temporal lobe epilepsy
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Prospects of differential diagnosis of focal lesion of pancreas by the microRNA assessment
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MicroRNA-directed control of complex mRNA stability patterns across cell typesPreprint
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Peripheral MicroRNA Signatures in Adolescent Depression
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Rs1347093 regulates microRNA-216/-217 expression and is associated with pancreatic cancer risk
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Serum‐Derived Extracellular Vesicles as Biological Indicator of Mobility Resilience in Older Adults
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- Authors
- Keller, A., Gröger, L., Tschernig, T., Solomon, J., Laham, O., Schaum, N., Wagner, V., Kern, F., Schmartz, G. P., Li, Y., Borcherding, A., Meier, C., Wyss-Coray, T., Meese, E., Fehlmann, T., & Ludwig, N.
- Affiliations
- Saarland University (DE)
- Stanford University (US)
- Complete Genomics (United States) (US)
- Department of Neurology and Neurobiology, Stanford University, CA 94305, USA
- Corresponding author
- Keller, Andreas
- ORCID
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2021-09-27
- Volume
- 50
- Issue
- D1
- Pages
- D211-D221
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC8728130
- OpenAlex
- W3203475592
- Cited by
- 143
- References
- 59
- Citations by year
- 2026: 15 · 2025: 37 · 2024: 48 · 2023: 28 · 2022: 13 · 2021: 2
- FWCI
- 8.00
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nucleic Acids Research (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Publications of the UdS (Saarland University)
- Funders
- Saarland University
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
- Keywords
- microRNA expression, small RNA, piRNA, tRNA, organ-specific gene expression, human tissue samples, evolutionary conservation, Tabula Muris
- MeSH terms
- Animals, Atlases as Topic, Female, Humans, Male, Organ Specificity, RNA, Small Nuclear, RNA, Transfer, Software, Internet, RNA, Small Nucleolar, RNA, Small Interfering, MicroRNAs, Mice, Transcriptome, RNA, Long Noncoding
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