The N501Y spike substitution enhances SARS-CoV-2 transmission
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Summary: Beginning in the summer of 2020, a variant of SARS-CoV-2, the cause of the COVID-19 pandemic, emerged in the United Kingdom (UK). This B.1.1.7 variant increased rapidly in prevalence among sequenced strains, attributed to an increase in infection and/or transmission efficiency. The UK variant has 19 nonsynonymous mutations across its viral genome including 8 substitutions or deletions in the spike protein, which interacts with cellular receptors to mediate infection and tropism. Here, using a reverse genetics approach, we show that, of the 8 individual spike protein substitutions, only N501Y exhibited consistent fitness gains for replication in the upper airway in the hamster model as well as primary human airway epithelial cells. The N501Y substitution recapitulated the phenotype of enhanced viral transmission seen with the combined 8 UK spike mutations, suggesting it is a major determinant responsible for increased transmission of this variant. Mechanistically, the N501Y substitution improved the affinity of the viral spike protein for cellular receptors. As suggested by its convergent evolution in Brazil and South Africa, our results indicate that N501Y substitution is a major adaptive spike mutation of major concern.
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N501Y increases ACE2 affinity and increases virus replication in human upper-airway cells and in the upper respiratory tracts of hamsters.
“N501Y increases ACE2 affinity 128,146,147 and increases virus replication in human upper-airway cells and in the upper respiratory tracts of hamsters 127”
From The biological and clinical significance of emerging SARS-CoV-2 variants (2021) · cites this paper as [127]
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PCR performance in the SARS-CoV-2 Omicron variant of concern?
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Insights on the mutational landscape of the SARS-CoV-2 Omicron variant receptor-binding domain
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Immune evasion and ACE2 binding affinity contribute to SARS-CoV-2 evolution
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Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant
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Structures of Omicron spike complexes and implications for neutralizing antibody development
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In vitro evaluation of therapeutic antibodies against a SARS-CoV-2 Omicron B.1.1.529 isolate
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A delicate balance between antibody evasion and ACE2 affinity for Omicron BA.2.75
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SARS-CoV-2 spike N-terminal domain modulates TMPRSS2-dependent viral entry and fusogenicity
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Understanding Mutations in Human SARS-CoV-2 Spike Glycoprotein: A Systematic Review & Meta-Analysis
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Differential Pathogenesis of SARS-CoV-2 Variants of Concern in Human ACE2-Expressing Mice
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Variations within the Glycan Shield of SARS-CoV-2 Impact Viral Spike Dynamics
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Molecular Interactions of Tannic Acid with Proteins Associated with SARS-CoV-2 Infectivity
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- Authors
- Liu, Y., Liu, J., Plante, K. S., Plante, J. A., Xie, X., Zhang, X., Ku, Z., An, Z., Scharton, D., Schindewolf, C., Menachery, V. D., Shi, P.-Y., & Weaver, S. C.
- Affiliations
- The University of Texas Medical Branch at Galveston (US)
- Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases (US)
- Corresponding author
- Shi, Pei-Yong
- Weaver, Scott C.
- ORCID
- Venue
- Nature
- Publisher
- openRxiv
- Published
- 2021-03-09
- Volume
- 602
- Issue
- 7896
- Pages
- 294-299
- ISSN
- 0028-0836 (ISSN-L)
- PMC
- PMC8900207
- OpenAlex
- W3216019834
- Cited by
- 574
- References
- 37
- Citations by year
- 2026: 25 · 2025: 71 · 2024: 84 · 2023: 125 · 2022: 181 · 2021: 87
- FWCI
- 37.77
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Nature (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- Research Square (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- PubMed Central (submittedVersion, cc-by-nc-nd)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- Cancer Prevention and Research Institute of Texas (RP150551, RP150551 and RP190561, RP190561, AI153602)
- University of Texas System
- National Institutes of Health (AG049042, UL1TR001439)
- National Institute on Aging (AG049042)
- National Institute of Allergy and Infectious Diseases (R24AI120942, R01AI134907, R01AI153602, AI153602, AG049042, AI134907, T32AI007526)
- National Center for Advancing Translational Sciences
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Health Sciences › Medicine › Infectious Diseases › COVID-19 Clinical Research Studies
- Physical Sciences › Mathematics › Modeling and Simulation › COVID-19 epidemiological studies
- Keywords
- SARS-CoV-2, N501Y mutation, spike protein, B.1.1.7 Alpha variant, virus transmission, viral fitness, receptor binding affinity, airway epithelial cells, hamster model, convergent evolution, COVID-19 pandemic
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