Demography and Rapid Local Adaptation Shape Creole Cattle Genome Diversity in the Tropics
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Abstract The introduction of Iberian cattle in the Americas after Columbus’ arrival imposed high selection pressures on a limited number of animals over a brief period of time. Knowledge of the genomic regions selected during this process may help in enhancing climatic resilience and sustainable animal production. We first determined taurine and indicine contributions to the genomic structure of modern Creole cattle. Second, we inferred their demographic history using approximate Bayesian computation (ABC), linkage disequilibrium (LD) and Ne Slope (NeS) analysis. Third, we performed whole genome scans for selection signatures based on cross‐population extended haplotype homozygosity (XP‐EHH) and population differentiation (FST) to disentangle the genetic mechanisms involved in adaptation and phenotypic change by a rapid and major environmental transition. To tackle these questions, we combined SNP array data (~54,000 SNPs) in Creole breeds with their modern putative Iberian ancestors. Reconstruction of the population history of Creoles from the end of the 15th century indicated a major demographic expansion until the introduction of zebu and commercial breeds into the Americas ~180 years ago, coinciding with a drastic Ne contraction. NeS analysis provided insights into short‐term complexity in population change and depicted a decrease/expansion episode at the end of the ABC‐inferred expansion, as well as several additional fluctuations in Ne with the attainment of the current small Ne only towards the end of the 20th century. Selection signatures for tropical adaptation pinpointed the thermoregulatory slick hair coat region, identifying a new candidate gene (GDNF), as well as novel candidate regions involved in immune function, behavioural processes, iron metabolism and adaptation to new feeding conditions. The outcomes from this study will help in future‐proofing farm animal genetic resources (FAnGR) by providing molecular tools that allow selection for improved cattle performance, resilience and welfare under climate change.
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DDX23, a heat shock gene, showed up-regulation in Sahiwal peripheral blood mononuclear cells from tropical regions relative to Ladakhi cattle from hypobaric hypoxia regions.
“DDX23, a heat shock gene, showed up-regulation in Sahiwal peripheral blood mononuclear cells from tropical regions relative to Ladakhi cattle from hypobaric hypoxia regions [108,109].”
From The Genomic Landscape of Cattle: Domestication, Dispersal, and Adaptive Evolution (2026) · cites this paper as [109]
The Results and Discussion section reports genomic selection signals related to heat tolerance in Creole cattle, not gene-expression measurements in Sahiwal or Ladakhi blood cells. Searches for DDX23, peripheral blood mononuclear cells, and hypobaric hypoxia found no passage addressing the claimed comparison. Page numbers were unavailable in our copy. (LLM, conf=0.75)
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- Authors
- Pitt, D., Bruford, M. W., Barbato, M., Orozco‐terWengel, P., Martínez, R., & Sevane, N.
- Affiliations
- Cardiff University (GB)
- Università Cattolica del Sacro Cuore (IT)
- Corporación Colombiana de Investigación Agropecuaria – AGROSAVIA (CO)
- Corresponding author
- Sevane, Natalia
- ORCID
- Venue
- Evolutionary Applications
- Publisher
- Wiley
- Published
- 2018-05-18
- Volume
- 12
- Issue
- 1
- Pages
- 105-122
- ISSN
- 1752-4563 (ISSN-L)
- 1752-4571
- PMC
- PMC6304683
- OpenAlex
- W2800412533
- Cited by
- 79
- References
- 58
- Citations by year
- 2026: 9 · 2025: 13 · 2024: 7 · 2023: 12 · 2022: 3 · 2021: 15 · 2020: 12 · 2019: 2 · 2018: 6
- FWCI
- 5.37
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Evolutionary Applications (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- ORCA Online Research @Cardiff (Cardiff University) (acceptedVersion)
- Greater South Information System
- Funders
- Biotechnology and Biological Sciences Research Council (BB/M019276/1, BB/M009122/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
- Keywords
- Creole cattle, Iberian cattle, demographic history, approximate Bayesian computation, selection signatures, tropical adaptation, thermoregulation, glial cell line-derived neurotrophic factor, hair coat, immune function, iron metabolism, livestock genetic resources, climate resilience
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