Cited by 1,073Aquaculture disease management and microbiotaAquaculture Nutrition and GrowthGut microbiota and health

The DOI matches its Crossref record; 233 of the 240 references it cites were found in a registry or an index.

Role of gastrointestinal microbiota in fish

Open access

Nayak, Sukanta K·2010·Aquaculture Research

DOI 10.1111/j.1365-2109.2010.02546.x

Open this paper in CoChat — free account Open PDF

Abstract

The gastrointestinal (GI) tract of an animal consists of a very complex and dynamic microbial ecosystem that is very important from a nutritional, physiological and pathological point of view. A wide range of microbes derived from the surrounding aquatic environment, soil/sediment and feed are found to colonize in the GI tract of fish. Among the microbial groups, bacteria (aerobic, facultative anaerobic and obligate aneraobic forms) are the principal colonizers in the GI tract of fish, and in some fish, yeasts are also reported. The common bacterial colonizers in the GI tract of freshwater and marine fish include Vibrio, Aeromonas, Flavobacterium, Plesiomonas, Pseudomonas, Enterobacteriaceae, Micrococcus, Acinetobacter, Clostridium, Fusarium and Bacteroides, which may vary from species to species as well as environmental conditions. Besides, several unknown bacteria belonging to Mycoplasma, Arthrobacter, Brochothrix, Jeotgailbacillus, Ochrobactrum, Psychrobacter and Sejongia species in the GI tract of different fish species have now been identified successfully using culture-independent techniques. Gnotobiotic and conventional studies indicate the involvement of GI microbiota in fish nutrition, epithelial development, immunity as well as disease outbreak. This review also highlights the need for manipulating the gut microbiota with useful beneficial microbes through probiotic, prebiotic and synbiotic concepts for better fish health management.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1111/j.1365-2109.2010.02546.x

Cites

233 of 233 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913
Dietary Modulation of the Human Colonic Microbiota: Introducing the Concept of Prebiotics
Gibson, G. R., & Roberfroid, M. B. (1995) · Journal of Nutrition · doi:10.1093/jn/125.6.1401 · Cited by 7,659
MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT
Savage, D. C. (1977) · Annual Review of Microbiology · doi:10.1146/annurev.mi.31.100177.000543 · Cited by 2,436
Innate Immunity: The Virtues of a Nonclonal System of Recognition
Medzhitov, R., & Janeway, C. A. (1997) · Cell · doi:10.1016/s0092-8674(00)80412-2 · Cited by 2,434
Chromatin–IgG complexes activate B cells by dual engagement of IgM and Toll-like receptors
Leadbetter, E. A., Rifkin, I. R., Hohlbaum, A. M., Beaudette-Zlatanova, B. C., Shlomchik, M. J., & Marshak‐Rothstein, A. (2002) · Nature · doi:10.1038/416603a · Cited by 1,929
A Genomic View of the Human- Bacteroides thetaiotaomicron Symbiosis
Xu, J., Bjursell, M. K., Himrod, J., Deng, S., Carmichael, L. K., Chiang, H. C., Hooper, L. V., & Gordon, J. I. (2003) · Science · doi:10.1126/science.1080029 · Cited by 1,353
The use of probiotics in aquaculture
Gatesoupe, F.-J. (1999) · Aquaculture · doi:10.1016/s0044-8486(99)00187-8 · Cited by 1,263
The current status and future focus of probiotic and prebiotic applications for salmonids
Merrifield, D. L., Dimitroglou, A., Foey, A., Davies, S. J., Baker, R. T. M., Bøgwald, J., Castex, M., & Ringø, E. (2010) · Aquaculture · doi:10.1016/j.aquaculture.2010.02.007 · Cited by 997
Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota
Rawls, J. F., Samuel, B. S., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0400706101 · Cited by 986
Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection
Rawls, J. F., Mahowald, M. A., Ley, R. E., & Gordon, J. I. (2006) · Cell · doi:10.1016/j.cell.2006.08.043 · Cited by 978

Show all 240 references

Research works printed but not linked: 31

Brock, 1997, Biology of Microorganism
DoBell, 1932, Anton Von Leewenhoek and Big ‘Little Animals’
Gatesoupe, 1991, The use of probiotics in fish hatcheries, results and prospect
Hatha, 2000, Bacterial flora of the intestines of farm raised freshwater fishes Catla catla, Labeo rohita and Ctenopharyngodon idella, Fishery Technology, 37, 59
Hoffmann, 2009, Stimulating immunity in fish and crustaceans, Aqua Culture Asia Pacific Magazine, 5, 22
Karunasagar, 1999, Diagnosis, treatment and prevention of microbial diseases of fish and shellfish, Current Science, 76, 387
Lesel, 1981, Nutrition Des Poissions, 89
Lesel, 1982, Influence d'un stress de manipulation sur le transit dela microflore bacterienne digestive chezla truite are-en-ciel Salmo garidneri Richarson, Acta Ecology Applie, 3, 23
Metchnikoff, 1901, Surlaflore du corps, Human Member Protocol of Manchester Litereture and Philosophical Society, 45, 1
Mickeniene, 1999, Bacterial flora in the digestive tract of native and alien species of crayfish in Lithuania, Freshwater Crayfish, 12, 279
Molinari, 2003, Bacterial microflora in the gastrointestinal tract of Nile tilapia, Oreochromis niloticus, cultured in a semi-intensive system, Acta Scientiarum Biological Sciences Maringa, 25, 267
Moriarty, 1990, Microbiology in Poikilotherms, 217
Ogbondeminu, 1993, The occurrence and distribution of enteric bacteria in fish and water of tropical aquaculture ponds in Nigeria, Journal of Aquaculture in Tropics, 8, 61
Ogbondeminu, 1993, Antibiotic resistance in enteric bacterial isolates from fish and water media, Journal of Aquaculture in Tropics, 8, 207
Onarheim, 1990, Microbiology in Poikilotherms, 197
Ringø, 1994, Microflora of arctic charr, Salvilinus alpinus (L). Gastrointestinal microflora of free living fish and effect of diet and salinity on intestinal microflora, Aquaculture and Fish Management, 25, 623
Rodriguez-Estrada, 2009, Effects of single and combined supplementation of Enterococcus faecalis, mannan oligosaccharide and polyhydrobutyric acid on growth performance and immune response of rainbow trout Oncorhynchus mykiss, Aquaculture Science, 57, 609
Sakai, 1979, Invasive routes of Aeromonas salmonicida salmonid furuculorts, Scientific Reports of the Hokkaido fish Hatchery, 34, 1
Sakata, 1989, Methods for Microbilogical Examinations, 141
Sakata, 1990, Microbiology in Poikiloterms, 171
Sera, 1974, Effect of the Ocean Environment on Microbial Activities, 467
Shcherbina, 1971, The reaction of the medium and the rate of absorption of nutrients in the intestine of carp, Journal of Ichthyology, 11, 81
Staykov, 2005, Lessons From the Past to Optimise the Future (Special Publication No 35, June 2005), 431
Sugita, 1981, Aerobic and anaerobic bacteria in the intestine of ayu, Pleloglossus altivelis, Bulletin of College of Agriculture and Veterinary Medicine, 38, 302
Sugita, 1982, Bacterial flora in the gastrointestine of Tilapia nilotica adapted in sea water, Bulletin of the Japanese Society of Scientific Fisheries, 48, 987, 10.2331/suisan.48.987 · DOI
Sugita, 1989, Bacterial flora of gastrointestine of freshwater fishes in river, Bulletin of Japanese Society Fisheries, 49, 1387, 10.2331/suisan.49.1387 · DOI
Sugita, 1992, Effect of culture conditions on the growth and vit. B12 productivity of anaerobic intestinal bacteria isolated from freshwater fishes, Bulletin of College of Agriculture and Veterinary Medicine, Nihon University, 9, 122
Syvokiene, 1989, Simbiontnoe Pishchevarenie u Gidrobiontov Inasekomykh
Wang, 1994, Study on the intestinal microflora of carp in freshwater cultured pond, Acta Hydrobiologica, 18, 354
Westerdahl, 1994, Characterisation of turbot (Scophthalmus maximus) associated bacteria with inhibitory effect against the fish pathogen Vibrio anguillarum, Acta Microbiology Immunology Hungerica, 41, 403
Zaman, 1994, The Proceeding of the Third Asian Fisheries Forum, 314

Sorted by citations

Items 501–600 of 1,000

Acute toxic effects of microcystin-LR on crayfish (Procambarus clarkii): Insights from antioxidant system, histopathology and intestinal flora
Zhang, Y., Li, Z., Tian, X., Xu, P., Sun, K., & Ren, N. (2023) · Environmental Science and Pollution Research · doi:10.1007/s11356-023-26171-6 · Cited by 19
“It can also participate in energy storage and supply essential vitamins and amino acids for the host (Gill et al. 2006; Nayak 2010).”
Background
Identification of an Acinetobacter lwoffii strain isolated from diseased hybrid sturgeon (Acipenser baerii♀× Acipenser schrenckii♂)
Zhang, M., Dou, Y., Xiao, Z., Xue, M., Jiang, N., Liu, W., Chen, X., Fan, Y., Zhang, Q., & Zhou, Y. K. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.739649 · Cited by 18
Evidence of a divided nutritive function in rainbow Trout (Oncorhynchus mykiss) midgut and hindgut microbiomes by whole shotgun metagenomic approach
Betiku, O. C., Yeoman, C. J., Gaylord, T. G., Ishaq, S. L., Duff, G. C., & Sealey, W. M. (2023) · Aquaculture Reports · doi:10.1016/j.aqrep.2023.101601 · Cited by 18
Microbiome analysis reveals potential for modulation of gut microbiota through polysaccharide-based prebiotic feeding in Oreochromis niloticus (Linnaeus, 1758)
Bera, A. K., Chowdhury, H., Ghatak, S., Malick, R. C., Chakraborty, N., Chakraborty, H. J., Swain, H. S., Hassan, M. A., & Das, B. K. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2023.1168284 · Cited by 18
“It is reported that fish gut harbors 10(7)–10(11) bacteria g of intestinal content (Nayak, 2010).”
BackgroundInfluential
Potential mechanisms of different methylation degrees of pectin driving intestinal microbiota and their metabolites to modulate intestinal health of Micropterus salmoides
Liu, Y., Zhou, H., Fan, J., Huang, H., Deng, J., & Tan, B. (2023) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2023.126297 · Cited by 18
The LPS derived from the cell walls of the Gram-negative bacteria Pantoea agglomerans stimulates growth and immune status of rainbow trout (Oncorhynchus mykiss) juveniles
Skalli, A., Castillo, M., Andree, K. B., Tort, L., Furones, D., & Gisbert, E. (2013) · Aquaculture · doi:10.1016/j.aquaculture.2013.09.037 · Cited by 19
A first insight into the intestinal microbiota of snow trout (Schizothorax zarudnyi)
Ghanbari, M., Shahraki, H., Kneifel, W., & Domig, K. J. (2016) · Symbiosis · doi:10.1007/s13199-016-0455-2 · Cited by 18
“The intestine of vertebrates is a multifunctional organ system involved in the digestion, resorption and absorption of food components, in electrolyte balance, endocrine metabolic regulation of and immunity (Austin 2002; Ghanbari et al. 2009, 2015; Nayak 2010).”
Characterization of the intestinal microbiota of wild caught and farmed fine flounder (Paralichthys adspersus)
Leiva, J. S., Opazo, R., Remond, C., Uribe, E., Velez, A., & Romero, J. (2017) · Latin American Journal of Aquatic Research · doi:10.3856/vol45-issue2-fulltext-12 · Cited by 18
“The load and diversity of fish microbiota are influenced by many intrinsic and extrinsic factors (Nayak, 2010).”
Background
Dietary supplementation of montmorillonite promotes growth and intestinal health in turbot (Scophthalmus maximus)
Shi, X., YunZhi, L., Li, Y., Zhang, P., Yang, Z., & Liu, H. (2021) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2021.115176 · Cited by 18
Abundant bacteria in the proximal and distal intestine of healthy Siberian sturgeons (Acipenser baerii)
Pérez, T., Alba, C., Aparicio, M., de Andrés, J., Ruiz-Santa-Quiteria, J. A., Rodríguez, J. M., & Gibello, A. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.03.055 · Cited by 21
“Diet and feeding habits can also affect the quantity and diversity of bacterial composition in the gut microbiota community of adult fish (Campbell and Buswell, 1983; Nayak, 2010; Brunvold et al., 2007; Muegge et al., 2011; Sullam et al., 2012; Xia et al., 2014; Ye et al., 2014).”
BackgroundResultInfluential
Correction: Diet type influences the gut microbiome and nutrient assimilation of Genetically Improved Farmed Tilapia (Oreochromis niloticus)
Parata, L., Mazumder, D., Sammut, J., & Egan, S. (2021) · PLoS ONE · doi:10.1371/journal.pone.0251802 · Cited by 18
Variations and Interseasonal Changes in the Gut Microbial Communities of Seven Wild Fish Species in a Natural Lake with Limited Water Exchange during the Closed Fishing Season
Liang, Y., Wang, Z., Gao, N., Qi, X., Zeng, J., Cui, K., Lu, W., & Bai, S. (2024) · Microorganisms · doi:10.3390/microorganisms12040800 · Cited by 17
“A complex and integrated interaction between the epithelium, immune components in the mucosa, and microbes is responsible for the development and maturation of the gut-associated immune system of the host [4,5].”
Background
Altitude adaptation: The unseen work of gut microbiota
Guo, J., Zhao, R., Li, K., Tan, Y., Wang, L., Ling, H., Zhang, H., Dharmarajan, G., Bi, Y., & Yang, R. (2024) · hLife · doi:10.1016/j.hlife.2024.11.004 · Cited by 20
Crosstalk Between Intestinal Microbiota and Host Defense Peptides in Fish
Yu, X., Yu, Y., & Liu, Z. (2025) · Biology · doi:10.3390/biology14091243 · Cited by 18
“The intestinal microbiota also modulates immune responses by signaling through immune cells to promote immune tissue maturation, antibody production, T cell differentiation, and macrophage activation [116,120,121].”
Importance of gut microbiota in fish – A review
Uma, A., Subash, P., & Abraham, T. J. (2020) · Indian Journal of Animal Health · doi:10.36062/ijah.59.2spl.2020.181-194 · Cited by 21
“The colonization of fish gut begins early in the larval stage and is driven towards the achievement of a complex assemblage of gut-associated microorganisms (Nayak, 2010).”
The influence of probiotics of different microbiological composition on histology of the gastrointestinal tract of juvenile Oncorhynchus mykiss
Nikiforov-Nikishin, A. L., Nikiforov-Nikishin, D., Kochetkov, N. I., Smorodinskaya, S. V., & Klimov, V. I. (2021) · Microscopy Research and Technique · doi:10.1002/jemt.23927 · Cited by 17
“In most studies, an opposite effect of probiotic preparations was noted (Harper et al., 2011; Navarrete et al., 2012; Nayak, 2010; Zhang et al., 2014).”
Background
Protective effects of sulforaphane on inflammation, oxidative stress and intestinal dysbacteriosis induced by triphenyltin in Cyprinus carpio haematopterus
Ma, J., Wang, B., Pu, C., Chang, K., Cheng, Y., Sun, R., Qi, Q., Xu, R., Chen, J., & Zhang, C. (2023) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2023.109135 · Cited by 17
Impact of captivity and natural habitats on gut microbiome in Epinephelus akaara across seasons
Sun, H., Chen, F., Zheng, W., Huang, Y., Peng, H., Hao, H., & Wang, K. (2024) · BMC Microbiology · doi:10.1186/s12866-024-03398-y · Cited by 17
“…Psychromonas and Pseudahrensia exhibited a positive correlation with elevated water temperatures, leading to higher abundance of core microbes [26, 51]. β-diversity analysis clearly revealed compositional differences, indicating that the microbial community structure of wild and captive E. akaara…”
Background
Modulation of gut microbiota associated with abalone Haliotis gigantea by dietary administration of host-derived Pediococcus sp. Ab1
Iehata, S., Nakano, M., Tanaka, R., & Maeda, H. (2014) · Fisheries Science · doi:10.1007/s12562-013-0691-9 · Cited by 17
“Intestinal microbiota play an important role in food digestion, nutrient absorption, survival and health of host aquatic animals [1].”
Background
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)
Ming, J., Fu, Z., Ma, Z., Zhou, L., Zhang, Z., Song, C., Yuan, X., & Wu, Q. L. (2020) · MicrobiologyOpen · doi:10.1002/mbo3.1116 · Cited by 17
“The microbiota of the animal intestinal tract is complex and diverse, and together, they constitute an important functional unit that plays an important role in the growth, metabolism, and immunity of the host (Daugbjerg, Cesaroni, Ottesen, Diderichsen, & Osler, 2014; Nayak, 2010).”
Background
Immune response and intestinal microbial succession of half-smooth tongue sole (Cynoglossus semilaevis) infected with Vibrio vulnificus
Gong, C., Hao, Y., Liu, Y., Zhao, Y., Liu, Y., Wang, G., He, Z., Liu, J., An, B., Zhang, Y., et al. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.736229 · Cited by 17
Is Metagenomic Analysis an Effective Way to Analyze Fish Feeding Habits? A Case of the Yellowfin Sea Bream Acanthopagrus latus (Houttuyn) in Daya Bay
Pan, W., Qin, C., Zuo, T., Yu, G., Zhu, W., Ma, H., & Xi, S. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.634651 · Cited by 17
“The bacterial community plays an important role in improving the digestion, nutrient absorption efficiency and immune defense function of the host (Austin, 2006; Round and Mazmanian, 2009; Nayak, 2010; Wei et al., 2010).”
BackgroundInfluential
Intestinal microbiota lipid metabolism varies across rainbow trout (Oncorhynchus mykiss ) phylogeographic divide
Yildirimer, C., & Brown, K. H. (2018) · Journal of Applied Microbiology · doi:10.1111/jam.14059 · Cited by 17
“Moreover, in fishes, other factors, such as water temperature, habitat type and stress levels, can impact early teleost intestinal microbiota colonization (Verschuere et al. 2000; Nayak 2010; Sullam et al. 2015).”
Background
Dual-Function Analysis of Astaxanthin on Golden Pompano (Trachinotus ovatus) and Its Role in the Regulation of Gastrointestinal Immunity and Retinal Mitochondrial Dysfunction Under Hypoxia Conditions
Niu, J., Zhao, W., Lu, D., Xie, J.-J., He, X., Fang, H., & Liao, S. (2020) · Frontiers in Physiology · doi:10.3389/fphys.2020.568462 · Cited by 16
“Moreover, microbial community diversity is related to gastrointestinal system function (Nayak, 2010).”
Background
Siamese Fighting Fish (Betta splendens Regan) Gut Microbiota Associated with Age and Gender
Gruneck, L., Jinatham, V., Therdtatha, P., & Popluechai, S. (2022) · Fishes · doi:10.3390/fishes7060347 · Cited by 16
Selection of Autochthonous Yeasts Isolated from the Intestinal Tracts of Cobia Fish (Rachycentron canadum) with Probiotic Potential
Reinoso, S., Gutiérrez, M. S., Domínguez-Borbor, C., Argüello‐Guevara, W., Bohórquez‐Cruz, M., Sonnenholzner, S., Nova-Baza, D., Mardones, C., & Navarrete, P. (2023) · Journal of Fungi · doi:10.3390/jof9020274 · Cited by 16
Tilapia lake virus infection disrupts the gut microbiota of red hybrid tilapia (Oreochromis spp.)
Paimeeka, S., Tangsongcharoen, C., Lertwanakarn, T., Setthawong, P., Bunkhean, A., Tangwattanachuleeporn, M., & Surachetpong, W. (2024) · Aquaculture · doi:10.1016/j.aquaculture.2024.740752 · Cited by 16
Effects of dietary binder sources on growth, digestive enzymes activity, and gut barrier function and microbial composition of larval largemouth bass (Micropterus salmoides)
Chen, Z., Gong, Y., Miao, R., Chen, S., Zhang, Y., He, X., Huang, X., Chen, N., & Li, S. (2024) · Aquaculture · doi:10.1016/j.aquaculture.2024.740774 · Cited by 16
Bioavailability of Carbon Nanomaterial-Adsorbed Polycyclic Aromatic Hydrocarbons to Pimphales promelas: Influence of Adsorbate Molecular Size and Configuration
Linard, E. N., Apul, O. G., Karanfil, T., van den Hurk, P., & Klaine, S. J. (2017) · Environmental Science & Technology · doi:10.1021/acs.est.7b02164 · Cited by 16
Effect of Lactococcus lactis K-C2 on the growth performance, amino acid content and gut microflora of amberjack Seriola dumerili
Linh, N. T. H., Nagai, S., Nagasaka, N., Okane, S., & Taoka, Y. (2018) · Fisheries Science · doi:10.1007/s12562-018-1243-0 · Cited by 16
“Microbiota along the digestive tracts of fish play an important role in immunity, nutrition, fish growth, disease outbreaks and fish health management (Nayak 2010).”
Microbial valorization of solid wastes from a recirculating aquaculture system and the relevant microbial functions
Lee, J., Kim, I.-S., Emmanuel, A., & Koh, S. (2019) · Aquacultural Engineering · doi:10.1016/j.aquaeng.2019.102016 · Cited by 16
High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus)
Méndez-Pérez, R., García-López, R., Bautista-López, J. S. B.-L., Vázquez-Castellanos, J. F., Álvarez‐González, C. A., Peña‐Marín, E. S., Baltierra-Trejo, E., Schroeder, R. H. A., Domínguez-Rodríguez, V. I., Valdes, C. E. M., et al. (2020) · Latin American Journal of Aquatic Research · doi:10.3856/vol48-issue3-fulltext-2419 · Cited by 16
“Previous studies have shown that the fish gut hosts an estimated 107 to 1,011 bacteria per gram of intestinal content (Nayak, 2010).”
BackgroundInfluential
Growth and intestinal microbiota of Sabah giant grouper reared on food waste-based pellets supplemented with spirulina as a growth promoter and alternative protein source
Man, Y. B., Zhang, F., Lee, K., Mo, W. Y., Kwan, H. S., Chow, K. L., Man, K. Y., Tsang, Y. F., Li, W. C., & Wong, M. H. (2020) · Aquaculture Reports · doi:10.1016/j.aqrep.2020.100553 · Cited by 16
Opportunities for microbiome research to enhance farmed freshwater fish quality and production
Parata, L., Sammut, J., & Egan, S. (2021) · Reviews in Aquaculture · doi:10.1111/raq.12556 · Cited by 16
Dietary Lipid Effects on Gut Microbiota of First Feeding Atlantic Salmon (Salmo salar L.)
Nikouli, E., Kormas, K. A., Jin, Y. O., Ôlsen, Y., Bakke, I., & Vadstein, Ô. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.665576 · Cited by 16
“D, Day. the gut bacterial communities of both saltwater and freshwater fish species (Hansen and Olafsen, 1999; Nayak, 2010; McDonald et al., 2012; Navarrete et al., 2013; Bolnick et al., 2014; Kormas et al., 2014; Llewellyn et al., 2016; Stephens et al., 2016; Dehler et al., 2017; Tarnecki et al.,…”
Background
Solea senegalensis Bacterial Intestinal Microbiota Is Affected by Low Dietary Inclusion of Ulva ohnoi
Cerezo, I. M., Fumanal, M., Tapia-Paniagua, S. T., Bautista, R., Anguís, V., Fernández‐Díaz, C., Alarcón, F. J., Moríñigo, M. Á., & Balebona, M. C. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.801744 · Cited by 20
“Vibrio genus members have been reported as abundant taxa in the intestinal microbiota of marine fish species (Nayak, 2010; Sullam et al., 2012; Tapia-Paniagua et al., 2019).”
Background
Use of pre- and probiotics in finfish aquaculture
Iwashita, M. K. P., Addo, S., & Terhune, J. S. (2015) · Elsevier eBooks · doi:10.1016/b978-0-08-100506-4.00009-x · Cited by 16
Loss of gut microbial diversity in the cultured, agastric fish, Mexican pike silverside ( Chirostoma estor : Atherinopsidae)
Amillano-Cisneros, J. M., Hernández-Rosas, P. T., Gómez‐Gil, B., Navarrete‐Ramírez, P., Ríos‐Durán, M. G., Martínez‐Chávez, C. C., Johnston‐Monje, D., Martínez-Palacios, C. A., & Raggi, L. (2022) · PeerJ · doi:10.7717/peerj.13052 · Cited by 15
“Such studies have previously demonstrated that gut microbiome composition affects host development, the process of microbiome colonization and succession, and gene-environment or immune system-microbiota interactions (reviewed by Nayak, 2010 ; Butt & Volkoff, 2019 ).”
Influences of the alcoholic extract of Artemisia annua on gastrointestinal microbiota and performance of Nile tilapia
Soares, M. P., Cardoso, I. L., de Araújo, F. E., Angelis, C. F. D., Mendes, R., Mendes, L. W., Fernandes, M. N., Jonsson, C. M., de Queiroz, S. C. D. N., Duarte, M. C. T., et al. (2022) · Aquaculture · doi:10.1016/j.aquaculture.2022.738521 · Cited by 15
Recent trends in fish feed ingredients – mini review
Révész, N., & Biró, J. (2019) · Acta Agraria Kaposváriensis · doi:10.31914/aak.2286 · Cited by 17
“The ANFs in soybean meals caused enteritis in such cases (Knudsen et al., 2008; Krogdahl et al., 2015; Marković et al., 2016; Nayak, 2010; Sørensen et al., 2011).”
Background
Aeromonas load and species composition in tilapia ( Oreochromis niloticus ) cultured in earthen ponds in the Philippines
Pakingking, R. V., Palma, P. A., & Usero, R. C. (2020) · Aquaculture Research · doi:10.1111/are.14820 · Cited by 15
Red Cusk-Eel (Genypterus chilensis) Gut Microbiota Description of Wild and Aquaculture Specimens
Romero, J., Díaz, O., Miranda, C. D., & Rojas, R. (2022) · Microorganisms · doi:10.3390/microorganisms10010105 · Cited by 15
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish
Nyholm, L., Odriozola, I., Bideguren, G. M., Aizpurua, O., & Alberdi, A. (2022) · PeerJ · doi:10.7717/peerj.12992 · Cited by 15
“Nayak SK. 2010.”
Protein replacement in practical diets altered gut allochthonous bacteria of cultured cyprinid species with different food habits
Li, Z., Xu, L., Liu, W., Liu, Y., Ringø, E., Du, Z., & Zhou, Z. (2014) · Aquaculture International · doi:10.1007/s10499-014-9851-x · Cited by 15
Probing into the Impacts of Endogenous and Exogenous Short-Chain Fatty Acids (SCFAS) in Fish Health and Growth – A Review
Kalaiselvan, P., Malarvizhi, K., & Ranjan, A. (2024) · Annals of Animal Science · doi:10.2478/aoas-2024-0050 · Cited by 14
Are biopesticides really safe? Impacts on gut microbiota and intestinal health in freshwater fish
Saha, S., Mondal, A., Bag, S., Ghosh, S., Mandal, A. H., Saha, N. C., Chatterjee, S., Sopjani, M., Multisanti, C. R., & Faggio, C. (2025) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2025.104727 · Cited by 16
Dietary n‐3 long chain polyunsaturated fatty acids affect the serum biochemical parameters, lipid‐metabolism‐related of gene expression and intestinal health of juvenile hybrid grouper (♀ Epinephelus fuscoguttatus × ♂ Epinephelus lanceolatu )
An, W., Dong, X., Tan, B., Yang, Q., Chi, S., Zhang, S., Liu, H., & Yang, Y. (2021) · Aquaculture Nutrition · doi:10.1111/anu.13276 · Cited by 14
Protective effects of Bacillus licheniformis against Citrobacter freundii infection in Chinese mitten crab Eriocheir sinensis
Cao, H., Huang, X., Gu, Y., Zheng, X., Xu, L., & Gai, C. (2022) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2022.107805 · Cited by 14
Garlic Powder Supplementation Improves Growth, Nonspecific Immunity, Antioxidant Capacity, and Intestinal Flora of Chinese Mitten Crabs (Eriocheir sinensis)
Zhou, R., Liu, J., Shi, X., Fu, C., Jiang, Y., Zhang, R., Wu, Y., & Yang, C. (2022) · Aquaculture Nutrition · doi:10.1155/2022/6531865 · Cited by 14
“The antimicrobial properties of garlic may prevent the colonization of pathogenic bacteria in the gut and influence the immune response by providing an ideal environment for the proliferation of beneficial bacteria in the body and by manipulating the intestinal flora of the host to favor beneficial microbial communiti…”
Background
Assessing the Effects of Rotifer Feed Enrichments on Turbot (Scophthalmus maximus) Larvae and Post-Larvae Gut-Associated Bacterial Communities
Louvado, A., Castro, C., Silva, D., Oliveira, V., Conceição, L. E. C., Cleary, D. F. R., & Gomes, N. C. M. (2023) · Microorganisms · doi:10.3390/microorganisms11020520 · Cited by 14
Compound Chinese herbal extract (RMCP) supplementation improves defense against Aeromonas veronii infection in Chinese mitten crab Eriocheir sinensis
Zhou, H., Gai, C., Liu, J., Xu, L., Cao, H., & An, J. (2023) · Aquaculture International · doi:10.1007/s10499-023-01086-8 · Cited by 14
“1 3 Intestinal flora serves as a critical component of crabs and is substantially involved in intestinal development and immunity as well as disease tolerance (Nayak 2010; Cerf-Bersussan and Gaboriau-Rounthiau 2010; Shang et al.”
Background
Partial replacement of pelleted feed by moist fermented feed improved the feed conversion efficiency, liver and intestine health, and gut microbiota structure in common carp (Cyprinus carpio)
Zhang, Q., Jing, X., Zhao, Y., Xia, D., Liu, S., Li, D., Hao, Q., Wang, M., Yu, Z., Li, S., et al. (2023) · Aquaculture Reports · doi:10.1016/j.aqrep.2023.101690 · Cited by 14
Metagenomic insights into the energy metabolism and immune variation of sea cucumber Apostichopus japonicus during reproduction
Deng, B., Gao, Z., Ru, X., Tong, H., Liang, W., Eeckhaut, I., Zhang, L., & Xu, J. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740125 · Cited by 14
Influence of gut microbiome on health and development of penaeid shrimps
Hembrom, P. S., Barik, S., Deepthi, M., Kannoth, S., & Grace, T. (2023) · Aquatic Sciences · doi:10.1007/s00027-023-01018-x · Cited by 15
“…underscored that the establishment of a balanced and diverse gut microbiome during early developmental stages significantly contributes to improved nutrient absorption, enhanced digestive efficiency, and heightened immunity against pathogens (Rungrassamee et al. 2016; Nayak 2010; Gatesoupe 2007).”
Background
Effects of black soldier fly meal feeding on rainbow trout gut microbiota, immune-related gene expression, and Lactococcus petauri resistance
Sayramoğlu, H., Öztürk, R. Ç., Ustaoğlu, D., Terzi̇, Y., Yandı, İ., Kayis, S., Çapkın, E., & Altınok, İ. (2023) · Journal of Insects as Food and Feed · doi:10.1163/23524588-20230057 · Cited by 14
Decoding the intestinal response to heat stress in Gymnocypris eckloni: Insights from a thorough analysis of microbiome and transcriptome
Zhou, C., Duan, Y., Li, J., Fu, S., Bai, S., Zhuang, Y., Li, H., Zhou, Y., Shen, J., Zhou, R., et al. (2024) · Aquaculture · doi:10.1016/j.aquaculture.2024.741112 · Cited by 13
Culture-independent characterization of the autochthonous gut microbiota of grouper Epinephelus coioides following the administration of probiotic Enterococcus faecium
Sun, Y., Yang, H., Ma, R.-L., Huang, K.-P., & Ye, J. (2012) · Aquaculture International · doi:10.1007/s10499-012-9503-y · Cited by 14
“three decades, probiotic application in aquaculture has been studied extensively and a basis of the effect of probiotics on health parameters and growth performance was established, but the mechanisms involved in mediating these responses remain largely unknown (Nayak 2010; Merrifield et al. 2010a; Askarian et al. 201…”
BackgroundInfluential
Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T-RFLP method
Munir, M. B., Marsh, T. L., Blaud, A., Hashim, R., Joshua, W. J., & Nor, S. A. M. (2018) · Aquaculture Research · doi:10.1111/are.13799 · Cited by 14
“2018;49:3350–3361. diverse microbial community has been correlated with a well‐functioning GI system (Nayak, 2010).”
Background
Effects of chronic exposure to water accommodated fraction (WAF) of light crude oil on gut microbiota composition of the lined sole (Achirus lineatus)
Cerqueda‐García, D., Améndola-Pimenta, M., Zamora‐Briseño, J. A., González-Penagos, C. E., Árcega-Cabrera, F., Ceja-Moreno, V., & Rodríguez‐Canul, R. (2020) · Marine Environmental Research · doi:10.1016/j.marenvres.2020.105116 · Cited by 14
Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Gadoin, E., Durand, L., Guillou, A., Crochemore, S., Bouvier, T. C., d’Orbcastel, E. R., Dagorn, L., Auguet, J., Adingra, A., Desnues, C., et al. (2021) · Microorganisms · doi:10.3390/microorganisms9061157 · Cited by 14
“Of the commensal taxa, some Carnobacterium species, for example, are known to inhibit the action of certain fish pathogens [46,47].”
Background
Microbial management for bacterial pathogen control in invertebrate aquaculture hatcheries
Goulden, E. F., Høj, L., & Hall, M. R. (2013) · Elsevier eBooks · doi:10.1533/9780857097460.1.246 · Cited by 14
Variations in bile tolerance among Lactococcus lactis strains derived from different sources
Takanashi, S., Miura, A., Abe, K., Uchida, J., Itoi, S., & Sugita, H. (2014) · Folia Microbiologica · doi:10.1007/s12223-013-0297-8 · Cited by 14
Application of molecular tools to elucidate the microbiota of seafood
Rodrigues, P., Ferrari, R., & Conte-Júnior, C. (2018) · Journal of Applied Microbiology · doi:10.1111/jam.13701 · Cited by 12
“In seafood, the colonization of the digestive tract occurs even during the larval period (Bakke et al. 2015), with marine micro-organisms generally composed of Gram negative, facultative anaerobic bacteria (Cahill 1990; Onarheim et al. 1994; Nayak 2010).”
BackgroundInfluential
Dietary supplementation with Rehmannia glutinosa affects the composition of intestinal microorganisms in common carp
Chang, X., Feng, J., Guo, X., Huang, M., Nie, G., & Zhang, J. (2018) · Journal of Basic Microbiology · doi:10.1002/jobm.201800254 · Cited by 14
“Bacteroides may play an important role in common carp intestines based on the fermentation of plantderived substrates in the gut because these organisms allow the carp to maximize their energy intake from indigestible components by producing high levels of short-chain fatty acids (SCFAs) that supply the host with addi…”
Background
Microbial Communities of Red Sea Coral Reefs
Neave, M. J., Apprill, A. M., Aeby, G. S., Miyake, S., & Voolstra, C. R. (2019) · Coral reefs of the world · doi:10.1007/978-3-030-05802-9_4 · Cited by 14
Effects of a short pulse administration ofUlva rigidaon innate immune response and intestinal microbiota inSparus auratajuveniles
Abdala‐Díaz, R., García‐Márquez, J., Rico, R. M., Gómez‐Pinchetti, J. L., Mancera, J. M., Figueroa, F. L., Alarcón, F. J., Martínez‐Manzanares, E., & Moríñigo, M. Á. (2021) · Aquaculture Research · doi:10.1111/are.15148 · Cited by 14
Nutrition
Watts, S. A., Lawrence, A. L., & Lawrence, J. M. (2020) · Developments in aquaculture and fisheries science · doi:10.1016/b978-0-12-819570-3.00010-x · Cited by 14
Can Probiotics Affect Reproductive Processes of Aquatic Animals?
Gioacchini, G., Giorgini, E., Vaccari, L., & Carnevali, O. (2014) · Aquaculture Nutrition · doi:10.1002/9781118897263.ch12 · Cited by 14
Engineering the fish gut microbiome: could it serve as future-proof strategy for sustainable aquaculture?
Ma, A., Sarasan, M., Kachiprath, B., Sukumaran, V., Singh, I. S. B., & Puthumana, J. (2025) · Blue Biotechnology · doi:10.1186/s44315-025-00026-w · Cited by 14
“Apart from this, intestinal microbiota is also involved in epithelial proliferation and maturation which aids in the efficient absorption of nutrients from the gut [190].”
A Comprehensive Review of Antibiotics and Antimicrobial Resistance in the Aquaculture Sector of the World and Bangladesh
Afroze, S., Faisal, M., Khan, M. N. A., & Barua, H. (2025) · International Journal of Microbiology · doi:10.1155/ijm/8818516 · Cited by 15
“It is possible that the AMR markers present in the typical aquatic ﬂ ora may be the source of resistance markers in aquatic infections, similar to those found in land-based animals and humans [141, 142], and may be becoming zoonotic (Table 6).”
Spatial variation in the gastrointestinal microbiome, diet, and nutritional condition of a juvenile flatfish among coastal habitats
Morris, M. T., Hauton, C., Baylay, A. J., Peruzza, L., Targett, T. E., & Ciotti, B. J. (2021) · Marine Environmental Research · doi:10.1016/j.marenvres.2021.105413 · Cited by 13
“Proteobacteria, the most common microbial phylum we encountered in YOY plaice, is an abundant and dominant member of gut microbiota in both freshwater and marine fishes (Nayak 2010, Clements et al. 2014, Givens et al. 2015).”
Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles
Blanton, J. M., Peoples, L. M., Gerringer, M. E., Iacuaniello, C. M., Gallo, N. D., Linley, T. D., Jamieson, A. J., Drazen, J. C., Bartlett, D. H., & Allen, E. E. (2022) · mSphere · doi:10.1128/msphere.00032-22 · Cited by 13
Inclusion of Mannan-Oligosaccharides in Diets for Tropical Gar Atractosteus tropicus Larvae: Effects on Growth, Digestive Enzymes, and Expression of Intestinal Barrier Genes
Maytorena-Verdugo, C. I., Peña‐Marín, E. S., Álvarez-Villagómez, C. S., Pérez-Jiménez, G. M., Sepúlveda-Quiroz, C. A., & Álvarez‐González, C. A. (2022) · Fishes · doi:10.3390/fishes7030127 · Cited by 13
“The microbial structure and diversity and its establishment in the fish gastrointestinal tract are intricate processes that reflect the effects of the rearing water and the diet [4].”
Background
Comparative analysis of the intestinal microbiota in goldfish and crucian carps between different aquaponics and traditional farming
Wang, S.-X., Zhang, J.-Y., Du, X.-K., Liu, D.-J., Liu, L., & Shen, X.-H. (2022) · Aquaculture Reports · doi:10.1016/j.aqrep.2022.101240 · Cited by 13
Corpse decomposition of freshwater economic fish leads to similar resistomes and the enrichment of high-risk antibiotic resistance genes in different water types
Wang, X., Wan-Yan, R., Yang, J., Su, W., Yu, Q., Wang, S., Han, Q., Li, X., & Li, H. (2022) · Journal of Environmental Management · doi:10.1016/j.jenvman.2022.115944 · Cited by 13
High Dietary Histamine Induces Digestive Tract Oxidative Damage in Juvenile Striped Catfish (Pangasianodon hypophthalmus)
Liu, Y., Fu, X., Huang, H., Fan, J., Zhou, H., Deng, J., & Tan, B. (2022) · Antioxidants · doi:10.3390/antiox11112276 · Cited by 15
Characteristics of Microbiota in Different Segments of the Digestive Tract of Lycodon rufozonatus
Shang, Y., Zhong, H., Liu, G., Wang, X., Wu, X., Wei, Q., Shi, L., & Zhang, H. (2023) · Animals · doi:10.3390/ani13040731 · Cited by 13
“This is similar to the dominant genera in the microbiomes of carnivorous fish [74], as studies have revealed that Cetobacterium and Halomonas are the main microflora of carnivorous fish [74,75].”
Result
Dietary supplementation with polysaccharides from Rhizoma dioscoreae resulting in the enhanced immunity and the structural modulation of the intestinal microbiota in Luciobarbus capito
Sun, Y., Hu, X., Meng, X., Liu, R., Zhao, Z., Wang, S., Zhang, R., Guo, K., & Luo, L. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740001 · Cited by 13
Unveiling the gut bacteriome diversity and distribution in the national fish hilsa (Tenualosa ilisha) of Bangladesh
Kawser, A. Q. M. R., Hoque, M. N., Rahman, M. S., Sakif, T. I., Coffey, T. J., & Islam, T. (2024) · PLoS ONE · doi:10.1371/journal.pone.0303047 · Cited by 16
Microbiomes of Tilapia Culture Systems: Composition, Affecting Factors, and Future Perspectives
Huavas, J., Heyse, J., Props, R., Delamare‐Deboutteville, J., & Shelley, C. C. (2024) · Aquaculture Research · doi:10.1155/2024/5511461 · Cited by 15
Tadpoles fed supplemented diet with probiotic bacterium isolated from the intestinal tract of bullfrog Lithobates catesbeianus: Haematology, cell activity and electron microscopy
Pereira, S. A., Jerônimo, G. T., Marchiori, N. D. C., de Oliveira, H. M., Jesus, G. F. A., Schmidt, É. C., Bouzon, Z. L., Vieira, F. D. N., Martins, M. L., & Mouriño, J. L. P. (2017) · Microbial Pathogenesis · doi:10.1016/j.micpath.2017.11.033 · Cited by 13
Assessment of gut microbiota in different developmental stages of Malaysian Mahseer (Tor tambroides)
Nosi, M. Z. M., Emilia, S. N., Danish‐Daniel, M., & Iehata, S. (2018) · Aquaculture Research · doi:10.1111/are.13757 · Cited by 13
Symbiont coordinates stem cell proliferation, apoptosis, and morphogenesis of gut symbiotic organ in the stinkbug-Caballeronia symbiosis
Jang, S., Matsuura, Y., Ishigami, K., Mergaert, P., & Kikuchi, Y. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2022.1071987 · Cited by 15
“Recent studies in model animals such as mice, zebrafish, and fruit flies, have revealed that gut symbiotic bacteria contribute to diverse aspects of host metabolism and development, including the morphogenesis of the intestinal tract (Nayak, 2010), the development and homeostasis of immunity (Wu and Wu, 2012), and eve…”
Background
Effects of dietary Clostridium butyricum on the growth performance and intestinal health of hybrid groupers (Epinephelus lanceolatus♂ × E. fuscoguttatus♀)
Yang, K., Xun, P., Huang, J., Jiang, K., Huang, X., Yu, W., Xu, C., & Lin, H. (2023) · Aquaculture Reports · doi:10.1016/j.aqrep.2023.101588 · Cited by 13
The effect of stabilized culture of Lactobacillus rhamnosus GCC-3 on gut and liver health, and anti-viral immunity of zebrafish
Liang, H., Xie, Y., Li, M., Chen, J., Zhou, W., Xia, R., Ding, Q., Yao, Y., Zhang, Z., Yang, Y., et al. (2023) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2023.109074 · Cited by 13
Could the gut microbiota community in the coral trout Plectropomus leopardus (Lacepède, 1802) be affected by antibiotic bath administration?
Zheng, X., Zhou, S., Hu, J., Yang, R., Gu, Z., Qin, J. G., Ma, Z., & Yu, G. (2020) · Veterinary Medicine and Science · doi:10.1002/vms3.267 · Cited by 13
Combining molecular evolution and environmental genomics to unravel adaptive processes of MHC class IIB diversity in European minnows (Phoxinus phoxinus)
Collin, H., Burri, R., Comtesse, F., & Fumagalli, L. (2013) · Ecology and Evolution · doi:10.1002/ece3.650 · Cited by 13
“Even though in the present study potentially pathogenic bacteria were recovered from water samples and not from fish, numerous studies on bacteria associated with fish demonstrated that gut and gill microflora (including potential pathogens) is colonized by free living aquatic bacteria and/or ones associated to food (…”
Background
Studies on the Microbiota of Fishes and the Factors Influencing Their Composition
Larsen, A. M. (2014) · Cited by 13
Characterization of Host-Associated Microbiota and Isolation of Antagonistic Bacteria from Greater Amberjack (Seriola dumerili, Risso, 1810) Larvae
Paralika, V., Kokou, F., Karapanagiotis, S., & Makridis, P. (2023) · Microorganisms · doi:10.3390/microorganisms11081889 · Cited by 12
“Probiotics as an alternative to the use of antibiotics and other chemotherapeutic agents can make aquaculture more sustainable and decrease the ecological footprint of the sector, as they have the potential to improve the GI tract of the fish, including development and maturation of the intestine and immune system [70…”
Background
Effect of dietary supplementation with Leuconostoc mesenteroides DH on the antimicrobial capacity and overall health of juvenile loach (Misgurnus anguillicaudatus)
Xia, X., Liang, N., Ma, X., Lu, Q., Chang, Z., & Zhang, X. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740208 · Cited by 12
Impact of Climate Change on the Gut Microbiome of Fish and Shellfish
Diwan, A. D., Harke, S. N., & Panche, A. N. (2023) · Springer eBooks · doi:10.1007/978-981-99-0852-3_12 · Cited by 12
Bacterial and microalgal communities in carp polyculture systems: Composition, affecting factors and further perspectives
Bui, N. M. N., Heyse, J., Delamare‐Deboutteville, J., Defoirdt, T., Props, R., & Shelley, C. C. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740505 · Cited by 13
Fish-derived lactic acid bacteria supplementation enhanced the immunity and resistance in Crucian carp (Carassius auratus)
Li, R., Zhang, M., Zhou, Y., Wei, D., Ying-hui, Y., Gao, D., Shan, X., Sun, W., Dong, H., & Wang, G. (2024) · Aquaculture Reports · doi:10.1016/j.aqrep.2024.102037 · Cited by 12
Metabolic activity of gut microbial enrichment cultures from different marine species and their transformation abilities to plastic additives
Zhang, S., Hou, R., Sun, C., Huang, Q.-Y., Lin, L., Li, H., Liu, S., Cheng, Y., & Xu, X. (2024) · Environment International · doi:10.1016/j.envint.2024.108882 · Cited by 12
Microbial Interactions in Rearing Systems for Marine Fish Larvae
Paralika, V., & Makridis, P. (2025) · Microorganisms · doi:10.3390/microorganisms13030539 · Cited by 12
“Fish-associated microbiota studies before 2000 were based on this approach [122].”
Comparative analysis of gut microbiota diversity in endangered, economical, and common freshwater mussels using 16S rRNA gene sequencing
Liu, X., Cao, Y., Ouyang, S., & Wu, X. (2020) · Ecology and Evolution · doi:10.1002/ece3.6796 · Cited by 11
“The composition of gut microbiota was affected by many factors, such as species, lifestyle, feeding habit, diet, nutritional status, and living conditions (Ley et al., 2008; Nayak, 2010; Schwab, Cristescu, Northrup, Stenhouse, & Ganzle, 2011).”
Background
Characterization of Microbiomes Associated With the Early Life Stages of Sea Cucumber Apostichopus japonicus Selenka
Yu, J., Sakai, Y., Mino, S., & Sawabe, T. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.801344 · Cited by 12
Multi-kingdom microbiota and functions changes associated with culture mode in genetically improved farmed tilapia (Oreochromis niloticus)
Zhu, H., Qiang, J., Li, Q., Nie, Z., Gao, J., Sun, Y., & Xu, G. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2022.974398 · Cited by 12
“Nayak (2010) found that Clostridium and Cetobacterium in fish intestinal flora were closely related to the synthesis of vitamin B12.”
Background
Seasons Influence the Native Gut Microbiome of Lake Trout Salvelinus namaycush
Savard, P., Fernandes, T. J., Dao, A., McMeans, B. C., & Lazar, C. S. (2023) · Applied Microbiology · doi:10.3390/applmicrobiol3010019 · Cited by 12
Effects of different protein and lipid levels on the growth performance and intestinal microflora of loach (Paramisgurnus dabryanus)
Wang, Z., Li, S., Zhou, Q., Zhang, J., Li, Y., Li, Y., Yuan, Z., & Huang, G. (2023) · Animal nutrition · doi:10.1016/j.aninu.2023.02.007 · Cited by 12
“In our experiments, the relative abundances of Fusobacterium, Firmicutes and Bacteroidetes did not reach more than 10%, which may be due to different species, diets, sampling methods and analysis methods (Nayak, 2010; Clements et al., 2014; Deng and Swanson, 2015).”

Authors: Nayak, S. K.
Affiliations: Nihon University (JP)
Corresponding author: Nayak, Sukanta K
ORCID: Nayak, Sukanta K
Venue: Aquaculture Research
Publisher: Hindawi Limited
Published: 2010-06-16
Volume: 41
Issue: 11
Pages: 1553-1573
ISSN: 1355-557X (ISSN-L)
DOI: 10.1111/j.1365-2109.2010.02546.x
OpenAlex: W1912394394
Cited by: 1,073
References: 240
Citations by year: 2026: 74 · 2025: 97 · 2024: 85 · 2023: 104 · 2022: 111 · 2021: 109 · 2020: 94 · 2019: 80 · 2018: 82 · 2017: 58 · 2016: 36 · 2015: 30 · 2014: 40 · 2013: 30 · 2012: 22
FWCI: 9.65
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: doi.wiley.com/10.1002/tdm_license_1.1 (tdm, 1903 d)
Locations: Aquaculture Research (publishedVersion)
Funders: Nihon University
Directorate for Biological Sciences
Topics: Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
Life Sciences › Agricultural and Biological Sciences › Aquatic Science › Aquaculture Nutrition and Growth
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Keywords: gut microbiota, fish gut bacteria, fish nutrition, fish immunity, fish disease, probiotics, prebiotics, synbiotics, gut microbiota modulation, fish health management, culture-independent identification

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Role of gastrointestinal microbiota in fish

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks