The DOI matches its Crossref record; 233 of the 240 references it cites were found in a registry or an index.
Role of gastrointestinal microbiota in fish
Open accessAbstract
The gastrointestinal (GI) tract of an animal consists of a very complex and dynamic microbial ecosystem that is very important from a nutritional, physiological and pathological point of view. A wide range of microbes derived from the surrounding aquatic environment, soil/sediment and feed are found to colonize in the GI tract of fish. Among the microbial groups, bacteria (aerobic, facultative anaerobic and obligate aneraobic forms) are the principal colonizers in the GI tract of fish, and in some fish, yeasts are also reported. The common bacterial colonizers in the GI tract of freshwater and marine fish include Vibrio, Aeromonas, Flavobacterium, Plesiomonas, Pseudomonas, Enterobacteriaceae, Micrococcus, Acinetobacter, Clostridium, Fusarium and Bacteroides, which may vary from species to species as well as environmental conditions. Besides, several unknown bacteria belonging to Mycoplasma, Arthrobacter, Brochothrix, Jeotgailbacillus, Ochrobactrum, Psychrobacter and Sejongia species in the GI tract of different fish species have now been identified successfully using culture-independent techniques. Gnotobiotic and conventional studies indicate the involvement of GI microbiota in fish nutrition, epithelial development, immunity as well as disease outbreak. This review also highlights the need for manipulating the gut microbiota with useful beneficial microbes through probiotic, prebiotic and synbiotic concepts for better fish health management.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“When a fish consumes algal cells, the microbiome in the intestine digests the algal cell, releasing probiotic materials that inhibit pathogens (Austin, 2006;Ghanbari et al., 2015;Nayak, 2010).”
From Potential of microalgae as a sustainable feed ingredient for aquaculture (2021) · cites this paper as Nayak, 2010
In the citing paper
“Microalgae are known to have probiotic effects on fishes.”
From Potential of microalgae as a sustainable feed ingredient for aquaculture (2021) · cites this paper as Nayak, 2010
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913
Dietary Modulation of the Human Colonic Microbiota: Introducing the Concept of Prebiotics
Gibson, G. R., & Roberfroid, M. B. (1995) · Journal of Nutrition · doi:10.1093/jn/125.6.1401 · Cited by 7,659
MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT
Savage, D. C. (1977) · Annual Review of Microbiology · doi:10.1146/annurev.mi.31.100177.000543 · Cited by 2,436
Innate Immunity: The Virtues of a Nonclonal System of Recognition
Medzhitov, R., & Janeway, C. A. (1997) · Cell · doi:10.1016/s0092-8674(00)80412-2 · Cited by 2,434
Chromatin–IgG complexes activate B cells by dual engagement of IgM and Toll-like receptors
Leadbetter, E. A., Rifkin, I. R., Hohlbaum, A. M., Beaudette-Zlatanova, B. C., Shlomchik, M. J., & Marshak‐Rothstein, A. (2002) · Nature · doi:10.1038/416603a · Cited by 1,929
A Genomic View of the Human- Bacteroides thetaiotaomicron Symbiosis
Xu, J., Bjursell, M. K., Himrod, J., Deng, S., Carmichael, L. K., Chiang, H. C., Hooper, L. V., & Gordon, J. I. (2003) · Science · doi:10.1126/science.1080029 · Cited by 1,353
The use of probiotics in aquaculture
Gatesoupe, F.-J. (1999) · Aquaculture · doi:10.1016/s0044-8486(99)00187-8 · Cited by 1,263
The current status and future focus of probiotic and prebiotic applications for salmonids
Merrifield, D. L., Dimitroglou, A., Foey, A., Davies, S. J., Baker, R. T. M., Bøgwald, J., Castex, M., & Ringø, E. (2010) · Aquaculture · doi:10.1016/j.aquaculture.2010.02.007 · Cited by 997
Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota
Rawls, J. F., Samuel, B. S., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0400706101 · Cited by 986
Rawls, J. F., Mahowald, M. A., Ley, R. E., & Gordon, J. I. (2006) · Cell · doi:10.1016/j.cell.2006.08.043 · Cited by 978
Research works printed but not linked: 31
- Brock, 1997, Biology of Microorganism
- DoBell, 1932, Anton Von Leewenhoek and Big ‘Little Animals’
- Gatesoupe, 1991, The use of probiotics in fish hatcheries, results and prospect
- Hatha, 2000, Bacterial flora of the intestines of farm raised freshwater fishes Catla catla, Labeo rohita and Ctenopharyngodon idella, Fishery Technology, 37, 59
- Hoffmann, 2009, Stimulating immunity in fish and crustaceans, Aqua Culture Asia Pacific Magazine, 5, 22
- Karunasagar, 1999, Diagnosis, treatment and prevention of microbial diseases of fish and shellfish, Current Science, 76, 387
- Lesel, 1981, Nutrition Des Poissions, 89
- Lesel, 1982, Influence d'un stress de manipulation sur le transit dela microflore bacterienne digestive chezla truite are-en-ciel Salmo garidneri Richarson, Acta Ecology Applie, 3, 23
- Metchnikoff, 1901, Surlaflore du corps, Human Member Protocol of Manchester Litereture and Philosophical Society, 45, 1
- Mickeniene, 1999, Bacterial flora in the digestive tract of native and alien species of crayfish in Lithuania, Freshwater Crayfish, 12, 279
- Molinari, 2003, Bacterial microflora in the gastrointestinal tract of Nile tilapia, Oreochromis niloticus, cultured in a semi-intensive system, Acta Scientiarum Biological Sciences Maringa, 25, 267
- Moriarty, 1990, Microbiology in Poikilotherms, 217
- Ogbondeminu, 1993, The occurrence and distribution of enteric bacteria in fish and water of tropical aquaculture ponds in Nigeria, Journal of Aquaculture in Tropics, 8, 61
- Ogbondeminu, 1993, Antibiotic resistance in enteric bacterial isolates from fish and water media, Journal of Aquaculture in Tropics, 8, 207
- Onarheim, 1990, Microbiology in Poikilotherms, 197
- Ringø, 1994, Microflora of arctic charr, Salvilinus alpinus (L). Gastrointestinal microflora of free living fish and effect of diet and salinity on intestinal microflora, Aquaculture and Fish Management, 25, 623
- Rodriguez-Estrada, 2009, Effects of single and combined supplementation of Enterococcus faecalis, mannan oligosaccharide and polyhydrobutyric acid on growth performance and immune response of rainbow trout Oncorhynchus mykiss, Aquaculture Science, 57, 609
- Sakai, 1979, Invasive routes of Aeromonas salmonicida salmonid furuculorts, Scientific Reports of the Hokkaido fish Hatchery, 34, 1
- Sakata, 1989, Methods for Microbilogical Examinations, 141
- Sakata, 1990, Microbiology in Poikiloterms, 171
- Sera, 1974, Effect of the Ocean Environment on Microbial Activities, 467
- Shcherbina, 1971, The reaction of the medium and the rate of absorption of nutrients in the intestine of carp, Journal of Ichthyology, 11, 81
- Staykov, 2005, Lessons From the Past to Optimise the Future (Special Publication No 35, June 2005), 431
- Sugita, 1981, Aerobic and anaerobic bacteria in the intestine of ayu, Pleloglossus altivelis, Bulletin of College of Agriculture and Veterinary Medicine, 38, 302
- Sugita, 1982, Bacterial flora in the gastrointestine of Tilapia nilotica adapted in sea water, Bulletin of the Japanese Society of Scientific Fisheries, 48, 987, 10.2331/suisan.48.987 · DOI
- Sugita, 1989, Bacterial flora of gastrointestine of freshwater fishes in river, Bulletin of Japanese Society Fisheries, 49, 1387, 10.2331/suisan.49.1387 · DOI
- Sugita, 1992, Effect of culture conditions on the growth and vit. B12 productivity of anaerobic intestinal bacteria isolated from freshwater fishes, Bulletin of College of Agriculture and Veterinary Medicine, Nihon University, 9, 122
- Syvokiene, 1989, Simbiontnoe Pishchevarenie u Gidrobiontov Inasekomykh
- Wang, 1994, Study on the intestinal microflora of carp in freshwater cultured pond, Acta Hydrobiologica, 18, 354
- Westerdahl, 1994, Characterisation of turbot (Scophthalmus maximus) associated bacteria with inhibitory effect against the fish pathogen Vibrio anguillarum, Acta Microbiology Immunology Hungerica, 41, 403
- Zaman, 1994, The Proceeding of the Third Asian Fisheries Forum, 314
Cited by
Sorted by citations
Items 601–700 of 1,000
Microbiome, Epigenetics and Fish Health Interactions in Aquaculture
Consuegra, S., Webster, T. M. U., & Anka, I. Z. (2023) · Wiley eBooks · doi:10.1002/9781119821946.ch11 · Cited by 12
Zhao, Y., Zhou, W., Li, M., Zhang, Y., Lv, W., Huang, W., Yang, H., Yuan, Q., & Li, M. (2025) · Foods · doi:10.3390/foods14132383 · Cited by 11
“The sediment-rich bottom and aquatic vegetation in paddy fields create a heterogeneous microhabitat, offering diverse environmental microbial sources that promote the establishment of a functionally rich intestinal microbiota [49,50].”
Intestinal Microbiome Richness of Coral Reef Damselfishes (Actinopterygii: Pomacentridae)
Kavazos, C. R. J., Ricci, F., Leggat, W. P., Casey, J. M., Choat, J. H., & Ainsworth, T. D. (2022) · Integrative Organismal Biology · doi:10.1093/iob/obac026 · Cited by 11
Effects of plant-based proteins and handling stress on intestinal mucus microbiota in rainbow trout
Suhr, M., Fichtner‐Grabowski, F., Seibel, H., Bang, C., Franke, A., Schulz, C., & Hornburg, S. C. (2023) · Scientific Reports · doi:10.1038/s41598-023-50071-x · Cited by 11
“This well-defined resident microbiota is known to be essential to the host digestive system and is involved in several fundamental functions such as pathogen prevention, immune function, mucosal immunity, and nutrient metabolism 34 .”
BackgroundPan, Y., Zhao, W., Fang, J. K., Shi, J., Abo‐Raya, M. H., Li, D., Hu, M., & Wang, Y. (2024) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2024.135646 · Cited by 11
Bakky, M. A. H., Tran, N. T., Zhang, M., Wang, S., Zhang, Y., & Li, S. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.138683 · Cited by 11
Chen, Y., Ma, J., Yong, Y. S., Chen, Y., Chen, B., Cao, J., Peng, K., Wang, G., Huang, H. W., & Loh, J. (2024) · Animals · doi:10.3390/ani14243596 · Cited by 11
Bacterial Diversity Associated with Terrestrial and Aquatic Snails
Apostolou, K., Radea, C., Meziti, A., & Kormas, K. A. (2024) · Microorganisms · doi:10.3390/microorganisms13010008 · Cited by 11
“Aeromonas and Vibrio are frequently found in the gastrointestinal tract of marine organisms, where they can affect gut health and immune functions [63,64].”
Moroni, F., Naya-Català, F., Hafez, A. I., Domingo-Bretón, R., Soriano, B., Lloréns, C., & Pérez‐Sánchez, J. (2025) · Microorganisms · doi:10.3390/microorganisms13010198 · Cited by 12
“…feature in a wide range of species, including Atlantic salmon ( Salmo salar ), Atlantic cod ( Gadus morhua ), gilthead sea bream and fine flounder ( Paralichthys adspersus ), though our results might suggest that their presence is mostly independent of the nutritional background [37,38,70–75].”
Chen, L., Zhong, C., Tan, B., Xiang, Y., Yang, Y., & Long, X. (2025) · Aquaculture · doi:10.1016/j.aquaculture.2025.742463 · Cited by 11
Vestrum, R. I., Luef, B., Forberg, T., Bakke, I., & Vadstein, Ô. (2018) · Springer eBooks · doi:10.1007/978-3-319-73244-2_1 · Cited by 11
Occurrence and diversity of yeast species isolated from fish feed and tambatinga gut
Pinheiro, R. E. E., Rodrigues, A. C. F., Santos, J. T. D. O., Costa, J., Pereyra, C. M., Torres, A. M., Rosa, C. A. R., Santos, A. O., & Muratori, M. C. S. (2018) · Latin American Journal of Aquatic Research · doi:10.3856/vol46-issue4-fulltext-22 · Cited by 11
“Fish gastrointestinal tracts contain many different microorga- __________________ Corresponding editor: Mariel Gullian nisms which are part of a complex ecosystem reflecting their environment, microbial composition, and diet (Fjellheim et al., 2007; Nayak, 2010).”
BackgroundBhatnagar, A., & Dhillon, O. (2019) · Fisheries & Aquatic Life · doi:10.2478/aopf-2019-0020 · Cited by 11
Sun, F., Wang, C., & Chen, X. (2022) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-022-12048-0 · Cited by 11
“Intestinal microbes play an important role in host nutrition, metabolism, and health (Gatesoupe 1999; Moriarty 1997; Nayak 2010; Olafsen 2001).”
BackgroundTao, J., Gong, Y., Chen, S., Li, W., Xie, R., Zhang, H., Chen, N., Huang, X., & Li, S. (2023) · British Journal Of Nutrition · doi:10.1017/s0007114523002842 · Cited by 11
“The formation and establishment of fish intestinal microbiota is a complex process, influenced by feed and water environment (83,84) .”
Koca, S. B., Yiğit, N. Ö., Didinen, B. I., Bayrak, H., Eralp, H., Diler, İ., Metin, S., İlhan, İ., & Onuk, E. E. (2015) · Israeli Journal of Aquaculture - Bamidgeh · doi:10.46989/001c.20695 · Cited by 11
He, S., Zhou, Z., Banerjee, G., Huang, L., Ray, A. K., & Ringø, E. (2016) · Brazilian Archives of Biology and Technology · doi:10.1590/1678-4324-2016160332 · Cited by 11
Tanaka, R., Mitsuya, H., Aoki, M., Miyazaki, T., Ootsubo, M., & Bossier, P. (2016) · Fisheries Science · doi:10.1007/s12562-016-0981-0 · Cited by 10
“The application of probiotics in aquaculture is increasing, and currently, numerous microorganisms from both endogenous and exogenous sources are used as probiotics [30].”
Long, C., Wu, J.-Q., Liu, J.-L., & Tan, Z. (2023) · Aquaculture Research · doi:10.1155/2023/5553966 · Cited by 10
Wang, X., Li, T., Zhou, L., Tu, F., Rui, X., Xu, Z. Q., Liu, J., & Cao, F. (2023) · BMC Infectious Diseases · doi:10.1186/s12879-023-08766-z · Cited by 10
“A previous study showed that Proteobacteria are the core intestinal microbial population in fish [33], but in the two KP1196 and KP1195 groups, the proportion of proteobacteria was significantly smaller, indicating that the reduction of the normal microbial population will cause more pathology.”
ResultWang, Y., Liu, J., Xiao, H., Sun, H. L., Hu, H., Ma, X., Zhang, A., & Zhou, H. (2024) · Fish Physiology and Biochemistry · doi:10.1007/s10695-024-01330-9 · Cited by 10
“…absorption of nutrients, while the intricate interplay between gut microbiota and intestine is crucial for host growth and overall health (Valdes et al. 2018) as the intestine microbiota coevolve with their hosts and participate in physiological processes and metabolism of the host (Nayak 2010).”
Zheng, L., Zeng, C., Zhu, W., Zhang, J., Wang, L., Shao, J., & Zhao, W. (2024) · Journal of Marine Science and Engineering · doi:10.3390/jmse12112016 · Cited by 12
Wu, D. G., Harris, C. R., Kalis, K. M., Bowen, M. R., Biddle, J. F., & Farag, I. (2025) · Applied and Environmental Microbiology · doi:10.1128/aem.02229-24 · Cited by 10
“Additionally, gut microbiomes are dynamic, where fish hatch with few microbes in their gut as larvae (3), which increase in quantity and diversity as they take in water and food from the surrounding environment (1).”
Chen, W., Gao, S., Sun, P., Han, L., & Zhang, Z. (2025) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2025.116283 · Cited by 10
Zhou, L., Han, Y., Wang, D., Li, Y., Huang, X., & He, A. (2021) · Journal of Oceanology and Limnology · doi:10.1007/s00343-020-0214-3 · Cited by 10
Sandeep, K. P., De, D., Kumar, S., Raja, R. A., Mahalakshmi, P., Suvana, S., Sivaramakrishnan, T., Ambasankar, K., & Vijayan, K. K. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737834 · Cited by 10
Zhou, S., Rajput, A. P., Mao, T., Liu, Y., Ellepola, G., Herath, J., Yang, J. D., & Meegaskumbura, M. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.823254 · Cited by 10
“Hence, the microbiome of a host is dynamic system (Talwar et al., 2018), where microbe communities change depending on the environment and host physiology (Nayak, 2010).”
BackgroundLiu, Y., Zhou, H., Fan, J., Huang, H., Deng, J., & Tan, B. (2022) · Aquaculture · doi:10.1016/j.aquaculture.2022.738958 · Cited by 10
Ziab, M., Chaganti, S., & Heath, D. (2023) · Heredity · doi:10.1038/s41437-023-00620-x · Cited by 9
“Particular interest has been given to the microbiota of the gastrointestinal tract (gut microbiota), where it plays important roles both in the health and development of the host (Nayak 2010; Romero et al. 2014; Ghanbari et al. 2015).”
BackgroundReinoso, S., Gutiérrez, M. S., Reyes-Jara, A., Toro, M., GARCÍA, K. P., Reyes, G., Argüello‐Guevara, W., Bohórquez‐Cruz, M., Sonnenholzner, S., & Navarrete, P. (2023) · Microorganisms · doi:10.3390/microorganisms11092315 · Cited by 10
“The intestinal microbiota is composed of a large and complex diversity of microorganisms including bacteria, yeasts, viruses, archaea and protozoa [1,2].”
BackgroundLilli, G., Sirot, C., Campbell, H., Brophy, D., Graham, C. T., & George, I. (2023) · Frontiers in Marine Science · doi:10.3389/fmars.2023.1286706 · Cited by 10
Pang, A., Zhang, S., Dong, S., Zhang, X., Liang, J., Fang, Y., Tan, B., & Zhang, W. (2024) · Aquaculture International · doi:10.1007/s10499-023-01382-3 · Cited by 10
“Feed composition is one of the critical determinants of the formation of the fish intestinal flora (Nayak 2010).”
Zhang, Z., Yu, Y., Jiang, Y., Wang, Y., Liao, M., Rong, X., & Liu, Q. (2020) · Archives of Microbiology · doi:10.1007/s00203-020-01984-y · Cited by 10
“Although their living environment is different from that of terrestrial animals, its intestinal microbiota also plays a crucial role in the development and growth of fish (Gómez and Balcázar 2008; Nayak 2010; Sanchez et al.”
BackgroundYang, S., Li, X., Vásquez, H. E., Wang, A., Shi, Y., Li, J., Zhang, X., Zheng, X., & Gu, Z. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2021.800627 · Cited by 10
“In addition, intestinal microbiota activity is reported to be related to host longevity (Nayak, 2010).”
BackgroundSvanevik, C. S., Levsen, A., & Lunestad, B. T. (2012) · Food Control · doi:10.1016/j.foodcont.2012.08.003 · Cited by 10
“Many SSBs of fish, including several vibrios, Shewanella putrefaciens and Photobacterium phosphoreum, are found among the indigenous fish microbiota on the skin and in the intestine, as well as in the associated seawater (Austin, 2006; Cahill, 1990; Nayak, 2010; Svanevik & Lunestad, 2011).”
BackgroundPuri, P., Singh, R., & Sharma, J. G. (2023) · Beneficial Microbes · doi:10.3920/bm2022.0087 · Cited by 10
Smalls, J., Grim, C. J., & Parveen, S. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1235070 · Cited by 9
“A microbiome is a population or community of microorganisms that consist of bacteria, fungi, archaea, viruses, and other microbes associated with an ecological niche or that reside on or in various regions of a host (Nayak, 2010; Shreiner et al., 2015).”
BackgroundYan, H., Hu, Y., Liang, J., He, K., Kuang, X., Liu, Q., Zhao, L., & Yang, S. Y. (2024) · Fish Physiology and Biochemistry · doi:10.1007/s10695-024-01388-5 · Cited by 9
“While Mycoplasma was previously considered a harmful bacterium, recent evidence from microbial sequencing technologies has suggested its dominance in fish intestines (Nayak 2010).”
Dahran, N. A., Alotaibi, B. S., Abd‐Elhakim, Y. M., Ibrahim, R. E., Metwally, M. M. M., Khamis, T., El‐Far, A. H., Osman, A., Eskandrani, A. A., Babteen, N. A., et al. (2025) · Aquaculture International · doi:10.1007/s10499-024-01815-7 · Cited by 9
“Fish gut microbiota plays a pivotal role in regulating fish health, engaging in essential processes such as digestion, defense, and immune responses, and tissue stability (Nayak 2010).”
Olorunshola, M. M., Agidigbi, T. S., & Adeniyi, B. A. (2025) · BMC Microbiology · doi:10.1186/s12866-025-04139-5 · Cited by 9
“This higher prevalence of LAB is consistent with previous studies indicating that LAB dominate the gut microbiota of healthy fish, playing a crucial role in maintaining microbial balance and inhibiting pathogenic colonization [11, 21, 22].”
Mucosal immunity of farmed fish within aquaculture: Mechanisms, challenges, and advances
Mistri, A., Sardar, S., & Srivastava, A. (2025) · Aquaculture International · doi:10.1007/s10499-025-02353-6 · Cited by 9
Nel, A., Jones, C. L. W., Britz, P. J., & Landzela, S. (2018) · Journal of Shellfish Research · doi:10.2983/035.037.0117 · Cited by 9
“…to both the maturation of the abalone s gut and the different water environments encountered by abalone in the hatchery during weaning and those reared in outdoor tanks during grow-out, as the water environment and culture conditions are known to affect the gut microbiota of fishes (Nayak 2010).”
Backgroundda Costa, L. P., Lima, J. S., Siqueira, A. M. D. A., da Silva, E. C. C., Lima, V., da Silva, L. A., da Silva, S. R., dos Santos, T. F., Fugimura, M. M. S., Vaz, L., et al. (2021) · Aquaculture Nutrition · doi:10.1111/anu.13309 · Cited by 10
Jiang, M., Xiao, W., Ye, J., Xu, L., Peng, R., Han, Q., Lü, Z., Shi, H., & Jiang, X. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.941488 · Cited by 9
“Animals possess indigenous intestinal microbiota and stable digestive enzymes play an important role in food digestion, nutrient absorption, and the health of the host (Nayak, 2010; Ray et al., 2012).”
BackgroundLiu, Y., Fu, X., Zhou, H., Fan, J., Huang, H., Deng, J., & Tan, B. (2022) · Metabolites · doi:10.3390/metabo12101003 · Cited by 9
Zhou, D., Zhang, T., Ren, L., Fang, D., & Xu, D. (2022) · Fishes · doi:10.3390/fishes7060304 · Cited by 9
Islam, S., Riman, M. M., Mannan, S., Lawrence, M. L., & Abdelhamed, H. (2023) · Journal of Global Antimicrobial Resistance · doi:10.1016/j.jgar.2023.03.005 · Cited by 9
“The intestinal microbiota plays an important role in the overall health of animal hosts, contributing to nutrient extraction, immunity, epithelium development, and defence against pathogens [36].”
Huyghe, C. E. T., Aerts, D., Heindler, F. M., Kmentová, N., Cirhuza, D. M., Hellemans, B., Manda, A. C., Vanhove, M. P. M., N'sibula, T. M., VOLCKAERT, F. A. M., et al. (2023) · Hydrobiologia · doi:10.1007/s10750-023-05267-7 · Cited by 9
“The microbiome is also affected by biotic and abiotic ecological factors, such as season (Nayak, 2010) and habitat (Sullam et al.”
BackgroundFan, Y., Wang, Y., Li, L., Wang, X., Yu, X., Xu, L., Wang, S., Hu, F., Gai, C., Diao, J., et al. (2023) · Aquaculture Reports · doi:10.1016/j.aqrep.2023.101881 · Cited by 9
Effects of Different Farming Modes on Salmo trutta fario Growth and Intestinal Microbial Community
Wang, Z.-Z., Wang, Z.-T., Wang, W.-L., Lei, K., & Zhou, J. (2024) · Microorganisms · doi:10.3390/microorganisms12061082 · Cited by 9
“…Acidobacteria, and Chloroflexi, aligning with previous results indicating that the dominant gut microbe group in Nayak fish comprises bacteria [25] and with Roeselers G, who identified similar core microbial communities in zebrafish (Daniorerio) gut microbiota under diverse environmental…”
ResultEnvironmental biofilm communities associated with early‐stage common dentex (Dentex dentex) culture
Turgay, E., Steinum, T. M., Colquhoun, D., & Karataş, S. (2019) · Journal of Applied Microbiology · doi:10.1111/jam.14205 · Cited by 9
“While most studies have focused on either the cultivable (Planas and Cunha 1999; Olafsen 2001; Nayak 2010) or total (via targeted 16S rRNA gene metagenetics) microbiota of culture water, live feed and fish (Bakke et al. 2015; Califano et al. 2017), only a few have included biofilm studies (Rud et…”
BackgroundArias, C. R., Ray, L., Cai, W. C., & Willmon, E. (2019) · SDRP Journal of Aquaculture Fisheries & Fish Science · doi:10.25177/jaffs.2.2.ra.459 · Cited by 9
“Therefore, to truly understand the complex dynamics between fish and their microbiomes, more studies examining the microbial communities in wild fishes are needed since much is still unknown about the composition and structural function of these communities (Clements et al., 2007; Nayak, 2010).”
BackgroundInfluentialPierce, M. L., Lee, J. S. F., Dodd, E. T., & Poretsky, R. S. (2019) · Frontiers in Marine Science · doi:10.3389/fmars.2019.00203 · Cited by 9
“Many studies on fish microbiota have shown that environmental recruitment was a major route of colonization of fish species (Nayak, 2010; Semova et al., 2012; Wu et al., 2013; Schmidt et al., 2015; Sullam et al., 2015).”
BackgroundLi, Y., Chunyu, L., Yu, Z., & Ma, Q. (2020) · Journal of Ocean University of China · doi:10.1007/s11802-020-4342-3 · Cited by 9
“It is well known that the gastrointestinal microflora of aquatic animals play an important role in the growth and health of the animals (Nayak, 2010).”
BackgroundMi, J., Lu, R., Yan, X., Song, D., Yang, L., Qin, C., Yang, G., Zhang, H., Lin, M., & Nie, G. (2022) · Aquaculture Reports · doi:10.1016/j.aqrep.2022.101118 · Cited by 9
Eissa, E. H., El-Hamed, N. N. B. A., Ahmed, N. H., & Badran, M. F. (2022) · Thalassas An International Journal of Marine Sciences · doi:10.1007/s41208-022-00463-z · Cited by 9
“(Nayak 2010).”
Wan, J., Xi, Q., Tang, J., Liu, T., Liu, C., Li, H., Gu, X., Shen, M., Zhang, M., Fang, J., et al. (2022) · Animals · doi:10.3390/ani12172252 · Cited by 9
Kafilzadeh, R., Mousavi, M., & Baboli, M. J. (2013) · Aquaculture Aquarium Conservation & Legislation · Cited by 9
Gastrointestinal Microorganisms of Fish and Probiotics
Kiron, V. (2015) · Wiley eBooks · doi:10.1002/9781119005568.ch14 · Cited by 9
Gut Microbiome Analysis In Adult Tropical Gars ( Atractosteus tropicus )Preprint
Méndez-Pérez, R., García-López, R., Bautista-López, J. S. B.-L., Vázquez-Castellanos, J. F., Peña‐Marín, E. S., Martínez‐García, R., Domínguez-Rodríguez, V. I., Adams, R. H., Baltierra-Trejo, E., Valdes, C. E. M., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/557629 · Cited by 9
“It has been reported that GMB fish has between 107 and 1011 bacteria per gram of feces (Nayak 2010).”
BackgroundInfluentialZhou, F., Bu, W., Fan, H., Guo, S., Qi, M., Yao, G., Bei, Y., Huang, Y., Zhu, S., Ding, X., et al. (2024) · Metabolites · doi:10.3390/metabo14080443 · Cited by 8
“In the present study, the gut microbiota of O. bidens from two aquaculture systems almost aligned with earlier findings [49].”
ResultLiBin, H., Lu, T., Lu, X., Shi, J., Huang, Y., Du, X., Wang, D., Liang, Y., Lei, Y., Wang, L., et al. (2024) · Fishes · doi:10.3390/fishes9090345 · Cited by 8
Hong, Y., Pan, Y., Zhu, Q., Li, Y., Yang, H., Lin, B., Dong, Z., Lou, Y., & Fu, S. (2024) · Food Bioscience · doi:10.1016/j.fbio.2024.105335 · Cited by 8
Jossefa, A. A., Viagem, L. D. A., Cerozi, B. D. S., & Chenyambuga, S. W. (2024) · PLoS ONE · doi:10.1371/journal.pone.0313022 · Cited by 8
Zhai, C., Li, Y., Wang, R., Han, H., Zhang, Y., & Bo, M. (2025) · Antioxidants · doi:10.3390/antiox14080947 · Cited by 8
“The intestinal microbe community contributes to nutrient supplementation and is involved in the regulation of metabolism and the immune response [13,14].”
Tian, M., Zhao, S., Zhu, X., Han, D. C., & Zhang, L. (2025) · Aquaculture · doi:10.1016/j.aquaculture.2025.743051 · Cited by 8
Zan, Z., Mao, Q., Han, Z., & Sun, J. (2023) · Journal of the World Aquaculture Society · doi:10.1111/jwas.13000 · Cited by 8
Bacterial networks in Atlantic salmon with Piscirickettsiosis
Coca, Y., Godoy, M., Pontigo, J. P., Caro, D., Maracaja‐Coutinho, V., Arias‐Carrasco, R., Rodríguez‐Córdova, L., de, M. M., Sáez-Navarrete, C. A., & Burbulis, I. E. (2023) · Scientific Reports · doi:10.1038/s41598-023-43345-x · Cited by 8
Ahmed, R. O., Ali, A., Leeds, T. D., & Salem, M. (2023) · Microorganisms · doi:10.3390/microorganisms11112704 · Cited by 8
“The intestinal microbial community of fish has been demonstrated to be relevant in metabolism within the host [8].”
BackgroundMontemagno, F., Romano, C., Bastoni, D., Cordone, A., CASTRO, O. D., Stefanni, S. S., Sperone, E., & Giovannelli, D. (2024) · Microorganisms · doi:10.3390/microorganisms12030557 · Cited by 8
“…diversity of gut microbiomes, and the communities are 90% characterized by members of the phyla Proteobacteria, Bacteroidetes, and Firmicutes [10,11], varying in response to changing nutrition and across other body surfaces, like skin and gills, which is especially interesting in marine animals…”
BackgroundGuo, C., Ding, M., Zhang, S., Wang, Y., Ji, Y., Xu, S., Wang, Y., & Wang, D. (2024) · PLoS ONE · doi:10.1371/journal.pone.0300643 · Cited by 8
Li, Z., Lv, J., Chen, J., Sun, F., Sheng, R., Qin, Y., Rao, L., Lu, T., & Sun, L. (2024) · Journal of Fish Biology · doi:10.1111/jfb.16002 · Cited by 8
Adorian, T. J., Mombach, P. I., Pianesso, D., Loureiro, B. B., Lovatto, N. D. M., Goulart, F. R., Telles, Y. B., Macedo, M., & da Silva, L. P. (2019) · Aquaculture Research · doi:10.1111/are.14266 · Cited by 8
Kasozi, N., Wilhelmi, B., & Kaiser, H. (2021) · Journal of Applied Aquaculture · doi:10.1080/10454438.2021.1986192 · Cited by 8
Yang, Y., Lin, H., Xing, Y., Wen, J., Fang, W. Y., Zhang, J., & Duan, Y. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737848 · Cited by 8
Lian, C., Zhu, F.-C., Wei, Z., & He, L. (2021) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2021.103488 · Cited by 8
Antimicrobial Peptides from Fish
Desriac, F., Jégou, C., Brillet, B., Chevalier, P. L., & Fleury, Y. (2013) · CRC Press eBooks · doi:10.1201/b14944-6 · Cited by 8
Silvederio, G. X. L., Javellana, T. F., Genciana, A. B. N., Fontanilla, M. A. G., Traifalgar, R. F. M., Huervana, F. H., & del Castillo, C. S. (2025) · Journal of Genetic Engineering and Biotechnology · doi:10.1016/j.jgeb.2025.100520 · Cited by 7
Zhou, C. Q., & Ding, F. (2025) · Animals · doi:10.3390/ani15142017 · Cited by 7
“The stomach and intestine are key components of the fish digestive system, and their associated microbial communities play an essential role in maintaining host homeostasis and environmental adaptability [30].”
Li, L., Zhou, N., Wang, Z., Wang, T., Wang, Y., Qiao, F., Du, Z., & Zhang, M. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2593076 · Cited by 7
“28 Given the high microbial density and diversity in the gut, microbial biomarkers could contribute to the regulation of host metabolism through interactions with both the host and the gut microbiota.”
Wang, L., Tian, Y., Li, Z., Li, Z., Chen, S., Li, L., Li, W., Wang, Q., Lin, H., & Li, B. (2021) · Aquaculture Research · doi:10.1111/are.15607 · Cited by 7
Arun, D., & Midhun, S. J. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-90261-8.00011-0 · Cited by 7
Probiotics Based on Lactic Acid Bacteria for Aquaculture
Vasyliuk, O. M., Skrotskyi, S., La, K., & Tv, B. (2023) · Mikrobiolohichnyi Zhurnal · doi:10.15407/microbiolj85.02.075 · Cited by 7
Liang, Y., Liu, H., Zhai, S., Huang, L., Huang, W., Huang, B., Xu, J., Xiong, J., & Wang, B. (2023) · Heliyon · doi:10.1016/j.heliyon.2023.e16965 · Cited by 7
Huang, J., Li, J., Zhou, W., Cheng, Y., & Li, J. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1233815 · Cited by 7
“In the PC group, the Procambarus clarkii fed on more aquatic plants than those of the RC and RC-W groups, and Bacteroidetes could ferment the plant-derived substrates in the intestines, enabling the hosts to obtain additional energy (Nayak, 2010; van Rooyen et al., 2011), which could better explain the relative abunda…”
BackgroundHuang, P., Gao, J., Du, J., Nie, Z., Li, Q., Sun, Y., Xu, G., & Cao, L. (2023) · Comparative Biochemistry and Physiology Part C Toxicology & Pharmacology · doi:10.1016/j.cbpc.2023.109820 · Cited by 7
Yanes‐Roca, C., Nováková, E., Leclercq, E., Veselý, L., Galindo, A., Pérez, J. A., Pěnka, T., & Policar, T. (2024) · Frontiers in Marine Science · doi:10.3389/fmars.2024.1363522 · Cited by 7
Host habitats influence the gut microbial assembly mechanisms of cold-water fish
Xu, L., Chen, H., Zhao, L., Liu, X., Xiang, P., Deng, L., & Song, Z. (2024) · Aquaculture Reports · doi:10.1016/j.aqrep.2024.102094 · Cited by 8
Kim, J. A., Park, Y.-S., Kim, J.-H., & Choi, C. Y. (2024) · Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology · doi:10.1016/j.cbpb.2024.111029 · Cited by 7
Zhang, M., Hu, J., Wang, Y., Le, Q., Xu, S., Ying, X., Ying, D., Yang, Y., Zhang, Y., Li, Y., et al. (2020) · Aquaculture Research · doi:10.1111/are.14650 · Cited by 7
Takyi, E., LaPorte, J. P., Sohn, S., Stevick, R. J., Witkop, E. M., Gregg, L. S., Chesler-Poole, A. B., Small, J. M., White, M. M., Giray, C., et al. (2023) · Aquaculture Fish and Fisheries · doi:10.1002/aff2.112 · Cited by 7
Giebułtowicz, J., Grabicová, K., Brooks, B. W., & Grabic, R. (2023) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2023.167446 · Cited by 7
Influence of aquatic environment on microbiota of Liopropoma santi fish in a local river in Iraq
Al-Hisnawi, A. A., Mustafa, J. M., Yasser, Y. K., Hussain, K. A., & Jabur, A. M. (2016) · Karbala International Journal of Modern Science · doi:10.1016/j.kijoms.2016.01.001 · Cited by 7
Dai, J., Yu, G., Ou, W., Ai, Q., Zhang, W., Mai, K., & Zhang, Y. (2021) · Aquaculture Nutrition · doi:10.1111/anu.13401 · Cited by 7
Shifts in gut microbiome across five decades of repeated guppy translocations in Trinidadian streams
Evans, S. E., Zandonà, E., Amaral, J. R., & Fitzpatrick, S. W. (2022) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2021.1955 · Cited by 6
“Bacteria may colonize vertically from mother to offspring [7] and horizontally through contact with the environment and food [6].”
BackgroundShark Provisioning Influences the Gut Microbiota of the Black-Tip Reef Shark in French Polynesia
Esposito, A., Sasal, P., Clua, É., Meglécz, E., & Clérissi, C. (2022) · Fishes · doi:10.3390/fishes7060312 · Cited by 7
Tak, E. J., Kim, H. S., Lee, J., Kang, W., Hyun, D., Kim, P. S., Shin, N., & Bae, J. (2018) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.002626 · Cited by 7
Medicinal Plant Survey: ‘Good for Humans, Good for Fishes!’
Steinberg, C. E. W. (2024) · Springer eBooks · doi:10.1007/978-3-031-70938-8_2 · Cited by 6
Yan, Y., Wang, F., Chen, X., Dong, J., Gao, F., Zhang, H., Ye, X., Wu, C., & Sun, C. (2024) · Aquaculture Reports · doi:10.1016/j.aqrep.2024.102582 · Cited by 6
Xie, K., Liu, X., Shi, Y., Cai, M., Dai, J., Zhang, J., & Hu, Y. (2025) · Aquaculture Nutrition · doi:10.1155/anu/2233612 · Cited by 6
“The biological barrier of fi sh is composed of complex and interrelated microbial communities, and the main microbial composition groups include aerobic bacteria, facultative anaerobic bacteria, and strict anaerobic bacteria [47].”
Metadata
- Authors
- Nayak, S. K.
- Affiliations
- Nihon University (JP)
- Corresponding author
- Nayak, Sukanta K
- ORCID
- Nayak, Sukanta K
- Venue
- Aquaculture Research
- Publisher
- Hindawi Limited
- Published
- 2010-06-16
- Volume
- 41
- Issue
- 11
- Pages
- 1553-1573
- ISSN
- 1355-557X (ISSN-L)
- OpenAlex
- W1912394394
- Cited by
- 1,073
- References
- 240
- Citations by year
- 2026: 74 · 2025: 97 · 2024: 85 · 2023: 104 · 2022: 111 · 2021: 109 · 2020: 94 · 2019: 80 · 2018: 82 · 2017: 58 · 2016: 36 · 2015: 30 · 2014: 40 · 2013: 30 · 2012: 22
- FWCI
- 9.65
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Aquaculture Research (publishedVersion)
- Funders
- Nihon University
- Directorate for Biological Sciences
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
- Life Sciences › Agricultural and Biological Sciences › Aquatic Science › Aquaculture Nutrition and Growth
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- gut microbiota, fish gut bacteria, fish nutrition, fish immunity, fish disease, probiotics, prebiotics, synbiotics, gut microbiota modulation, fish health management, culture-independent identification
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review