The DOI matches its OpenAlex record; 3 of the 3 references it cites were found in a registry or an index.
What drives bacteria to produce a biofilm?
Abstract
Nearly 40 years ago, Dr. R.J. Gibbons made the first reports of the clinical relevance of what we now know as bacterial biofilms when he published his observations of the role of polysaccharide glycocalyx formation on teeth by Streptococcus mutans [Sci. Am. 238 (1978) 86]. As the clinical relevance of bacterial biofilm formation became increasingly apparent, interest in the phenomenon exploded. Studies are rapidly shedding light on the biomolecular pathways leading to this sessile mode of growth but many fundamental questions remain. The intent of this review is to consider the reasons why bacteria switch from a free-floating to a biofilm mode of growth. The currently available wealth of data pertaining to the molecular genetics of biofilm formation in commonly studied, clinically relevant, single-species biofilms will be discussed in an effort to decipher the motivation behind the transition from planktonic to sessile growth in the human body. Four potential incentives behind the formation of biofilms by bacteria during infection are considered: (1) protection from harmful conditions in the host (defense), (2) sequestration to a nutrient-rich area (colonization), (3) utilization of cooperative benefits (community), (4) biofilms normally grow as biofilms and planktonic cultures are an in vitro artifact (biofilms as the default mode of growth).
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Biofilms: Survival Mechanisms of Clinically Relevant Microorganisms
Donlan, R. M., & Costerton, J. W. (2002) · Clinical Microbiology Reviews · doi:10.1128/cmr.15.2.167-193.2002 · Cited by 6,644
The Involvement of Cell-to-Cell Signals in the Development of a Bacterial Biofilm
Davies, D. G., Parsek, M. R., Pearson, J. P., Iglewski, B. H., Costerton, J. W., & Greenberg, E. P. (1998) · Science · doi:10.1126/science.280.5361.295 · Cited by 3,396
MSCRAMM-MEDIATED ADHERENCE OF MICROORGANISMS TO HOST TISSUES
Patti, J. M., Allen, B. L., McGavin, M. J., & Höök, M. (1994) · Annual Review of Microbiology · doi:10.1146/annurev.mi.48.100194.003101 · Cited by 1,191
Research works printed but not linked: 59
- Costerton, 1978, How bacteria stick, Sci. Am., 238, 86, 10.1038/scientificamerican0178-86 · DOI · Paper page
- Lewis, 2001, Riddle of biofilm resistance, Antimicrob. Agents Chemother., 45, 999, 10.1128/AAC.45.4.999-1007.2001 · DOI · Paper page
- O'Toole, 2000, Biofilm formation as microbial development, Annu. Rev. Microbiol., 54, 49, 10.1146/annurev.micro.54.1.49 · DOI · Paper page
- Prigent-Combaret, 1999, Monitoring gene expression in biofilms, Methods Enzymol., 310, 56, 10.1016/S0076-6879(99)10006-5 · doi:10.1016/s0076-6879(99)10006-5
- Davies, 1993, Exopolysaccharide production in biofilms: substratum activation of alginate gene expression by Pseudomonas aeruginosa, Appl. Environ. Microbiol., 59, 1181, 10.1128/AEM.59.4.1181-1186.1993 · DOI · Paper page
- Shirtliff, 2002, Molecular interactions in biofilms, Chem. Biol., 9, 859, 10.1016/S1074-5521(02)00198-9 · DOI · Paper page
- Deighton, 1993, Regulation of slime production in Staphylococcus epidermidis by iron limitation, Infect. Immun., 61, 4473, 10.1128/IAI.61.10.4473-4479.1993 · DOI
- Baldassarri, 2001, Enterococcus spp. produces slime and survives in rat peritoneal macrophages, Med. Microbiol. Immunol., 190, 113, 10.1007/s00430-001-0096-8 · DOI · Paper page
- Yoshida, 2002, Multiple Streptococcus mutans genes are involved in biofilm formation, Appl. Environ. Microbiol., 68, 6283, 10.1128/AEM.68.12.6283-6291.2002 · DOI · Paper page
- Knobloch, 2001, Biofilm formation by Staphylococcus epidermidis depends on functional RsbU, an activator of the sigB operon: differential activation mechanisms due to ethanol and salt stress, J. Bacteriol., 183, 2624, 10.1128/JB.183.8.2624-2633.2001 · DOI · Paper page
- Rachid, 2000, Alternative transcription factor sigma(B) is involved in regulation of biofilm expression in a Staphylococcus aureus mucosal isolate, J. Bacteriol., 182, 6824, 10.1128/JB.182.23.6824-6826.2000 · DOI · Paper page
- Adams, 1999, Impact of rpoS deletion on Escherichia coli biofilms, Appl. Environ. Microbiol., 65, 4285, 10.1128/AEM.65.9.4285-4287.1999 · DOI · Paper page
- Kies, 2001, Identification of the sigB operon in Staphylococcus epidermidis: construction and characterization of a sigB deletion mutant, Infect. Immun., 69, 7933, 10.1128/IAI.69.12.7933-7936.2001 · doi:10.1128/iai.69.12.7933-7936.2001
- Valle, 2003, SarA and not sigma(B) is essential for biofilm development by Staphylococcus aureus, Mol. Microbiol., 48, 1075, 10.1046/j.1365-2958.2003.03493.x · DOI · Paper page
- Corona-Izquierdo, 2002, A mutation in rpoS enhances biofilm formation in Escherichia coli during exponential phase of growth, FEMS Microbiol. Lett., 211, 105, 10.1111/j.1574-6968.2002.tb11210.x · doi:10.1111/j.1574-6968.2002.tb11210.x
- Whiteley, 2001, Gene expression in Pseudomonas aeruginosa biofilms, Nature, 413, 860, 10.1038/35101627 · DOI · Paper page
- Burne, 1998, Oral streptococci. products of their environment, J. Dent. Res., 77, 445, 10.1177/00220345980770030301 · DOI · Paper page
- Lejeune, 2003, Contamination of abiotic surfaces: what a colonizing bacterium sees and how to blur it, Trends Microbiol., 11, 179, 10.1016/S0966-842X(03)00047-7 · DOI
- Ammendolia, 1999, Slime production and expression of the slime-associated antigen by staphylococcal clinical isolates, J. Clin. Microbiol., 37, 3235, 10.1128/JCM.37.10.3235-3238.1999 · doi:10.1128/jcm.37.10.3235-3238.1999
- Jefferson, 2004, The teicoplanin-associated locus regulator (TcaR) and the intercellular adhesin locus regulator (IcaR) are transcriptional inhibitors of the ica locus in Staphylococcus aureus, J. Bacteriol., 186, 2449, 10.1128/JB.186.8.2449-2456.2004 · DOI · Paper page
- Shapiro, 1998, Thinking about bacterial populations as multicellular organisms, Annu. Rev. Microbiol., 52, 81, 10.1146/annurev.micro.52.1.81 · DOI · Paper page
- Caldwell, 1999, Post-modern ecology â is the environment the organism, Environ. Microbiol., 1, 279, 10.1046/j.1462-2920.1999.00048.x · doi:10.1046/j.1462-2920.1999.00048.x
- Rice, 2003, Death's toolbox: examining the molecular components of bacterial programmed cell death, Mol. Microbiol., 50, 729, 10.1046/j.1365-2958.2003.t01-1-03720.x · DOI
- Yarwood, 2004, Quorum sensing in Staphylococcus aureus biofilms, J. Bacteriol., 186, 1838, 10.1128/JB.186.6.1838-1850.2004 · DOI · Paper page
- Redfield, 2002, Is quorum sensing a side effect of diffusion sensing, Trends Microbiol., 10, 365, 10.1016/S0966-842X(02)02400-9 · DOI · Paper page
- Federle, 2003, Interspecies communication in bacteria, J. Clin. Invest., 112, 1291, 10.1172/JCI20195 · doi:10.1172/jci20195 · Paper page
- Merritt, 2003, Mutation of luxS affects biofilm formation in Streptococcus mutans, Infect. Immun., 71, 1972, 10.1128/IAI.71.4.1972-1979.2003 · DOI · Paper page
- Wen, 2002, Functional genomics approach to identifying genes required for biofilm development by Streptococcus mutans, Appl. Environ. Microbiol., 68, 1196, 10.1128/AEM.68.3.1196-1203.2002 · DOI · Paper page
- Vuong, 2003, Quorum-sensing control of biofilm factors in Staphylococcus epidermidis, J. Infect. Dis., 188, 706, 10.1086/377239 · DOI · Paper page
- Chun, 2004, Inactivation of a Pseudomonas aeruginosa quorum-sensing signal by human airway epithelia, Proc. Natl. Acad. Sci. USA, 101, 3587, 10.1073/pnas.0308750101 · DOI · Paper page
- Hayes, 2003, Toxins-antitoxins: plasmid maintenance, programmed cell death, and cell cycle arrest, Science, 301, 1496, 10.1126/science.1088157 · DOI · Paper page
- Cvitkovitch, 2003, Quorum sensing and biofilm formation in Streptococcal infections, J. Clin. Invest., 112, 1626, 10.1172/JCI200320430 · DOI · Paper page
- Roberts, 1999, Transfer of a conjugative transposon, Tn5397 in a model oral biofilm, FEMS Microbiol. Lett., 177, 63, 10.1111/j.1574-6968.1999.tb13714.x · DOI
- Ghigo, 2001, Natural conjugative plasmids induce bacterial biofilm development, Nature, 412, 442, 10.1038/35086581 · DOI · Paper page
- Loo, 2000, Streptococcus gordonii biofilm formation: identification of genes that code for biofilm phenotypes, J. Bacteriol., 182, 1374, 10.1128/JB.182.5.1374-1382.2000 · DOI · Paper page
- Bayles, 2003, Are the molecular strategies that control apoptosis conserved in bacteria, Trends Microbiol., 11, 306, 10.1016/S0966-842X(03)00144-6 · DOI
- Kuchma, 2000, Surface-induced and biofilm-induced changes in gene expression, Curr. Opin. Biotechnol., 11, 429, 10.1016/S0958-1669(00)00123-3 · DOI
- Davies, 1995, Regulation of the alginate biosynthesis gene algC in Pseudomonas aeruginosa during biofilm development in continuous culture, Appl. Environ. Microbiol., 61, 860, 10.1128/AEM.61.3.860-867.1995 · DOI · Paper page
- Kodjikian, 2003, Biofilm formation on intraocular lenses by a clinical strain encoding the ica locus: a scanning electron microscopy study, Invest. Ophthalmol. Vis. Sci., 44, 4382, 10.1167/iovs.03-0185 · doi:10.1167/iovs.03-0185
- Prigent-Combaret, 1999, Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli, J. Bacteriol., 181, 5993, 10.1128/JB.181.19.5993-6002.1999 · DOI · Paper page
- Vidal, 1998, Isolation of an Escherichia coli K-12 mutant strain able to form biofilms on inert surfaces: involvement of a new ompR allele that increases curli expression, J. Bacteriol., 180, 2442, 10.1128/JB.180.9.2442-2449.1998 · DOI · Paper page
- O'Toole, 1998, Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis, Mol. Microbiol., 28, 449, 10.1046/j.1365-2958.1998.00797.x · DOI · Paper page
- Idone, 2003, Effect of an orphan response regulator on Streptococcus mutans sucrose-dependent adherence and cariogenesis, Infect. Immun., 71, 4351, 10.1128/IAI.71.8.4351-4360.2003 · DOI
- Caiazza, 2003, Alpha-toxin is required for biofilm formation by Staphylococcus aureus, J. Bacteriol., 185, 3214, 10.1128/JB.185.10.3214-3217.2003 · DOI · Paper page
- Vaudaux, 1995, Use of adhesion-defective mutants of Staphylococcus aureus to define the role of specific plasma proteins in promoting bacterial adhesion to canine arteriovenous shunts, Infect. Immun., 63, 585, 10.1128/IAI.63.2.585-590.1995 · DOI · Paper page
- Gross, 2001, Key role of teichoic acid net charge in Staphylococcus aureus colonization of artificial surfaces, Infect. Immun., 69, 3423, 10.1128/IAI.69.5.3423-3426.2001 · DOI · Paper page
- Hussain, 1997, A 140-kilodalton extracellular protein is essential for the accumulation of Staphylococcus epidermidis strains on surfaces, Infect. Immun., 65, 519, 10.1128/IAI.65.2.519-524.1997 · DOI · Paper page
- Hufnagel, 2004, A putative sugar-binding transcriptional regulator in a novel gene locus in Enterococcus faecalis contributes to production of biofilm and prolonged bacteremia in mice, J. Infect. Dis., 189, 420, 10.1086/381150 · DOI
- Toledo-Arana, 2001, The enterococcal surface protein, Esp, is involved in Enterococcus faecalis biofilm formation, Appl. Environ. Microbiol., 67, 4538, 10.1128/AEM.67.10.4538-4545.2001 · DOI · Paper page
- Kjaergaard, 2000, Antigen 43 facilitates formation of multispecies biofilms, Environ. Microbiol., 2, 695, 10.1046/j.1462-2920.2000.00152.x · DOI · Paper page
- Lunsford, 1996, Natural genetic transformation in Streptococcus gordonii: comX imparts spontaneous competence on strain wicky, J. Bacteriol., 178, 5831, 10.1128/jb.178.19.5831-5835.1996 · DOI
- O'Toole, 2000, The global carbon metabolism regulator Crc is a component of a signal transduction pathway required for biofilm development by Pseudomonas aeruginosa, J. Bacteriol., 182, 425, 10.1128/JB.182.2.425-431.2000 · DOI · Paper page
- Knobloch, 2003, Establishment of an arbitrary PCR for rapid identification of Tn917 insertion sites in Staphylococcus epidermidis: characterization of biofilm-negative and nonmucoid mutants, Appl. Environ. Microbiol., 69, 5812, 10.1128/AEM.69.10.5812-5818.2003 · DOI
- Prigent-Combaret, 2000, Developmental pathway for biofilm formation in curli-producing Escherichia coli strains: role of flagella, curli and colanic acid, Environ. Microbiol., 2, 450, 10.1046/j.1462-2920.2000.00128.x · DOI · Paper page
- Wolz, 2002, Transcription of clumping factor A in attached and unattached Staphylococcus aureus in vitro and during device-related infection, Infect. Immun., 70, 2758, 10.1128/IAI.70.6.2758-2762.2002 · DOI
- Gilmore, 2003, Growth, development, and gene expression in a persistent Streptococcus gordonii biofilm, Infect. Immun., 71, 4759, 10.1128/IAI.71.8.4759-4766.2003 · DOI
- Li, 2002, A quorum-sensing signaling system essential for genetic competence in Streptococcus mutans is involved in biofilm formation, J. Bacteriol., 184, 2699, 10.1128/JB.184.10.2699-2708.2002 · DOI · Paper page
- Svensater, 2001, Protein expression by planktonic and biofilm cells of Streptococcus mutans, FEMS Microbiol. Lett., 205, 139, 10.1111/j.1574-6968.2001.tb10937.x · DOI
- Tremoulet, 2002, A proteomic study of Escherichia coli O157:H7 NCTC 12900 cultivated in biofilm or in planktonic growth mode, FEMS Microbiol. Lett., 215, 7, 10.1016/S0378-1097(02)00879-0 · doi:10.1016/s0378-1097(02)00879-0
Cited by
The role of bacterial biofilms in chronic infections
Bjarnsholt, T. (2013) · APMIS · doi:10.1111/apm.12099 · Cited by 1,080
Ren, D., Madsen, J. S., Sørensen, S. J., & Burmølle, M. (2015) · The ISME Journal · doi:10.1038/ismej.2014.96 · Cited by 332
Haney, E., Trimble, M., Cheng, J., Vallé, Q., & Hancock, R. (2018) · Biomolecules · doi:10.3390/biom8020029 · Cited by 308
Thomas, V. C., Thurlow, L. R., Boyle, D., & Hancock, L. E. (2008) · Journal of Bacteriology · doi:10.1128/jb.00314-08 · Cited by 302
Beneficial biofilm formation by industrial bacteria Bacillus subtilis and related species
Morikawa, M. (2006) · Journal of Bioscience and Bioengineering · doi:10.1263/jbb.101.1 · Cited by 265
Metadata
- Authors
- Jefferson, K. K.
- Venue
- FEMS Microbiology Letters
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-07
- Volume
- 236
- Issue
- 2
- Pages
- 163-173
- ISSN
- 0378-1097 (ISSN-L)
- 1574-6968
- OpenAlex
- W4230690150
- Cited by
- 1,059
- References
- 3
- FWCI
- 7.98
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: What drives bacteria to produce a biofilm? https://app.cochat.ai/papers/10.1016/j.femsle.2004.06.005
- The paper
- Jefferson, K. K. (2004). What drives bacteria to produce a biofilm? FEMS Microbiology Letters. https://doi.org/10.1016/j.femsle.2004.06.005
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.