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Structural basis for FLCN RagC GAP activation in MiT-TFE substrate-selective mTORC1 regulation

Jansen, Rachel M., Peruzzo, Roberta, Fromm, Simon A., Yokom, Adam L., Zoncu, Roberto, Hurley, James H.·2022·Science Advances

Abstract

The mechanistic target of rapamycin complex 1 (mTORC1) regulates cell growth and catabolism in response to nutrients through phosphorylation of key substrates. The tumor suppressor folliculin (FLCN) is a RagC/D guanosine triphosphatase (GTPase)–activating protein (GAP) that regulates mTORC1 phosphorylation of MiT-TFE transcription factors, controlling lysosome biogenesis and autophagy. We determined the cryo–electron microscopy structure of the active FLCN complex (AFC) containing FLCN, FNIP2, the N-terminal tail of SLC38A9, the RagA GDP :RagC GDP.BeFx- GTPase dimer, and the Ragulator scaffold. Relative to the inactive lysosomal FLCN complex structure, FLCN reorients by 90°, breaks contact with RagA, and makes previously unseen contacts with RagC that position its Arg 164 finger for catalysis. Disruption of the AFC-specific interfaces of FLCN and FNIP2 with RagC eliminated GAP activity and led to nuclear retention of TFE3, with no effect on mTORC1 substrates S6K or 4E-BP1. The structure provides a basis for regulation of an mTORC1 substrate-specific pathway and a roadmap to discover MiT-TFE family selective mTORC1 antagonists.

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Metadata

Authors
Jansen, R. M., Peruzzo, R., Fromm, S. A., Yokom, A. L., Zoncu, R., & Hurley, J. H.
Affiliations
Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Venue
Science Advances
Published
2022-09-16
Volume
8
Issue
37
ISSN
2375-2548
Cited by
42
References
6
Language
en

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