The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii
Abstract
The complete 1.66-megabase pair genome sequence of an autotrophic archaeon, Methanococcus jannaschii , and its 58- and 16-kilobase pair extrachromosomal elements have been determined by whole-genome random sequencing. A total of 1738 predicted protein-coding genes were identified; however, only a minority of these (38 percent) could be assigned a putative cellular role with high confidence. Although the majority of genes related to energy production, cell division, and metabolism in M. jannaschii are most similar to those found in Bacteria, most of the genes involved in transcription, translation, and replication in M. jannaschii are more similar to those found in Eukaryotes. The Methanococcus jannaschii Genome Database
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Iwabe, N., Kuma, K., Hasegawa, M., Osawa, S., & Miyata, T. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.23.9355 · Cited by 902
Cited by
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
The sequence of the human genome
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909
Self-citationThe complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessières, P., Bolotin, A., Borchert, S., et al. (1997) · Nature · doi:10.1038/36786 · Cited by 3,679
The complete genome sequence of the gastric pathogen Helicobacter pylori
Tomb, J.-F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., Fleischmann, R. D., Ketchum, K. A., Klenk, H. P., Gill, S., Dougherty, B. A., et al. (1997) · Nature · doi:10.1038/41483 · Cited by 3,529
Self-citationThe Uncultured Microbial Majority
Rappé, M. S., & Giovannoni, S. J. (2003) · Annual Review of Microbiology · doi:10.1146/annurev.micro.57.030502.090759 · Cited by 2,017
The 26S Proteasome: A Molecular Machine Designed for Controlled Proteolysis
Voges, D., Zwickl, P., & Baumeister, W. (1999) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.68.1.1015 · Cited by 1,608
Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
Liu, Y., & Whitman, W. B. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1419.019 · Cited by 1,346
Complex archaea that bridge the gap between prokaryotes and eukaryotes
Spang, A., Saw, J. H., Jørgensen, S. L., Zaremba-Niedzwiedzka, K., Martijn, J., Lind, A. E., van Eijk, R., Schleper, C., Guy, L., & Ettema, T. J. G. (2015) · Nature · doi:10.1038/nature14447 · Cited by 1,324
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
Marraffini, L. A., & Sontheimer, E. J. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2749 · Cited by 919
CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
Bhaya, D., Davison, M., & Barrangou, R. (2011) · Annual Review of Genetics · doi:10.1146/annurev-genet-110410-132430 · Cited by 914
Short-sequence DNA repeats in prokaryotic genomes
van Belkum, A., Scherer, S., van Alphen, L., & Verbrugh, H. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.2.275-293.1998 · Cited by 737
Ishino, Y., Krupovic, M., & Forterre, P. (2018) · Journal of Bacteriology · doi:10.1128/jb.00580-17 · Cited by 558
Richardson, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-3-551 · Cited by 544
Strepp, R., Scholz, S., Kruse, S., Speth, V., & Reski, R. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.8.4368 · Cited by 371
Makarova, K. S. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.482 · Cited by 353
Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life
Spang, A., Caceres, E. F., & Ettema, T. J. G. (2017) · Science · doi:10.1126/science.aaf3883 · Cited by 346
Human Whole-Genome Shotgun Sequencing
Weber, J. L., & Myers, E. W. (1997) · Genome Research · doi:10.1101/gr.7.5.401 · Cited by 311
Schäfer, G., Engelhard, M., & Müller, V. (1999) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.63.3.570-620.1999 · Cited by 291
Dissimilatory Sulfate- and Sulfur-Reducing Prokaryotes
Rabus, R., Hansen, T. A., & Widdel, F. (2006) · The Prokaryotes · doi:10.1007/0-387-30742-7_22 · Cited by 276
Extremophiles and the Search for Extraterrestrial Life
Cavicchioli, R. (2002) · Astrobiology · doi:10.1089/153110702762027862 · Cited by 232
Gene structure, intracellular localization, and functional roles of sterol carrier protein-2
Gallegos, A. M., Atshaves, B. P., Storey, S. M., Starodub, O., Petrescu, A. D., Huang, H., McIntosh, A. L., Martin, G. G., Chao, H., Kier, A. B., et al. (2001) · Progress in Lipid Research · doi:10.1016/s0163-7827(01)00015-7 · Cited by 231
Energy-Converting [NiFe] Hydrogenases from Archaea and Extremophiles: Ancestors of Complex I
Hedderich, R. (2004) · Journal of Bioenergetics and Biomembranes · doi:10.1023/b:jobb.0000019599.43969.33 · Cited by 222
The discovery of CRISPR in archaea and bacteria
Mojica, F. J. M., & Rodriguez‐Valera, F. (2016) · The FEBS Journal · doi:10.1111/febs.13766 · Cited by 207
Wood, A. P., Aurikko, J. P., & Kelly, D. P. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2003.12.001 · Cited by 177
Distribution of Protein Folds in the Three Superkingdoms of Life
Wolf, Y. I., Brenner, S. E., Bash, P. A., & Koonin, E. V. (1999) · Genome Research · doi:10.1101/gr.9.1.17 · Cited by 183
Modular Assembly of Genes and the Evolution of New Functions
Patthy, L. (2003) · Genetica · doi:10.1023/a:1024182432483 · Cited by 166
Czatzkowska, M., Harnisz, M., Korzeniewska, E., & Koniuszewska, I. (2020) · Energy Science & Engineering · doi:10.1002/ese3.609 · Cited by 149
Gelfand, M. S., & Koonin, E. V. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.12.2430 · Cited by 134
Effect of minCD on FtsZ Ring Position and Polar Septation in Bacillus subtilis
Levin, P. A., Shim, J. J., & Grossman, A. D. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.22.6048-6051.1998 · Cited by 78
Crystal structure of archaeal RNase HII: a homologue of human major RNase H
Lai, L., Yokota, H., Hung, L.-W., Kim, R., & Kim, S.-H. (2000) · Structure · doi:10.1016/s0969-2126(00)00179-9 · Cited by 71
The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective
Guy, L., Saw, J. H., & Ettema, T. J. G. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016022 · Cited by 65
Nau-Wagner, G., Opper, D., Rolbetzki, A., Boch, J., Kempf, B., Hoffmann, T., & Bremer, E. (2012) · Journal of Bacteriology · doi:10.1128/jb.06642-11 · Cited by 65
A DNA Ligase from a Hyperthermophilic Archaeon with Unique Cofactor Specificity
Nakatani, M., Ezaki, S., Atomi, H., & Imanaka, T. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.22.6424-6433.2000 · Cited by 63
Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes
Slesarev, A. I., Belova, G. I., Kozyavkin, S. A., & Lake, J. A. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.2.427 · Cited by 49
Gene Cloning and Characterization of Recombinant RNase HII from a Hyperthermophilic Archaeon
Haruki, M., Hayashi, K., Kochi, T., Muroya, A., Koga, Y., Morikawa, M., Imanaka, T., & Kanaya, S. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.23.6207-6214.1998 · Cited by 40
Towards a Reconstruction of Ancestral Genomes by Gene Cluster Alignment
Wächtershäuser, G. (1998) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(98)80058-1 · Cited by 39
Loke, H.-K., Bennett, G. N., & Lindahl, P. A. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.220404397 · Cited by 33
The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database
Tang, Q.-Y., Ren, W., Wang, J., & Kaneko, K. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac197 · Cited by 31
Bartoschek, S., Vorholt, J. A., Thauer, R. K., Geierstanger, B. H., & Griesinger, C. (2000) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.2000.01331.x · Cited by 28
Radical AdoMet enzymes in complex metal cluster biosynthesis
Duffus, B. R., Hamilton, T. L., Shepard, E. M., Boyd, E. S., Peters, J. W., & Broderick, J. B. (2012) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2012.01.002 · Cited by 26
Ownby, K., Xu, H., & White, R. H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m413937200 · Cited by 25
The GbsR family of transcriptional regulators: functional characterization of the OpuAR repressor.
Ronzheimer, S., Warmbold, B., Arnhold, C., & Bremer, E. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02536 · Cited by 9
Metadata
- Authors
- Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J.-F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A., Scott, J. L., Geoghagen, N. S. M., Weidman, J. F., Fuhrmann, J. L., Nguyen, D., Utterback, T. R., Kelley, J. M., Peterson, J. D., Sadow, P. W., Hanna, M. C., Cotton, M. D., Roberts, K. M., Hurst, M. A., Kaine, B. P., Borodovsky, M., Klenk, H.-P., Fraser, C. M., Smith, H. O., Woese, C. R., & Venter, J. C.
- Venue
- Science
- Published
- 1996-08-23
- Volume
- 273
- Issue
- 5278
- Pages
- 1058-1073
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W4239833500
- Cited by
- 2,082
- References
- 1
- FWCI
- 107.49
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.