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Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin
Open accessAbstract
Reactivating the fetal globin gene: Mutation of adult-type globin genes causes sickle cell disease and thalassemia. Although treating these hemoglobinopathies with gene therapy is possible, there is a pressing need for pharmacologic approaches to treat general patient populations. One promising approach is to reactivate repressed expression of fetal-type hemoglobin (HbF) in adult erythroid cells. Masuda et al. reveal a molecular mechanism governing HbF repression as mediated by the LRF/ZBTB7A transcription factor. The study may encourage the development of new HbF reactivation therapies for hemoglobinopathies. Science , this issue p. 285
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“Its inactivation in HUDEP-2 cells led to ;50% HbF; BCL11A plus ZBTB7A knockout caused .90% HbF. 25”
From Fetal hemoglobin in sickle cell anemia (2020) · cites this paper as [25]
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Direct and indirect regulation of fetal globin transcript by the RNA-binding protein IGF2BP1
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Self-citationYe, D., Chen, M., Zhu, Y. J., Feng, X., Xu, L., & Huang, H. (2025) · Clinical Epigenetics · doi:10.1186/s13148-025-01962-5 · Cited by 4
“Inhibiting BCL11A or ZBTB7A can increase the expression of the γ-globin gene [85–87].”
p27Kip1 regulates γ-globin production
Balbin-Cuesta, G., Drysdale, C. M., Kerpet, C., Yu, L., Myers, G., Lin, Z., McGee, B. M., Friedman, A. D., Liu, X., Singh, S. A., et al. (2025) · Blood · doi:10.1182/blood.2025028895 · Cited by 3
Traxler, E. A., Hotan, Q., Shao, Y., Komar, C. A., Chen, Q., Saari, M. S., Thrasher, A. J., Yang, S., Qin, K., Wang, M. Y., et al. (2026) · Blood · doi:10.1182/blood.2025030137 · Cited by 3
Applications of genome editing technologies in the treatment of human diseases
Alshorman, J., Mehran, M. J., Tembo, K. M., Mostafavi, N., Bolideei, M., & Wang, Y. L. (2026) · Gene Therapy · doi:10.1038/s41434-026-00627-z · Cited by 3
miR-365-3p mediates BCL11A and SOX6 erythroid-specific coregulation: A new player in HbF activation
Simbula, M., Manchinu, M. F., Mingoia, M., Pala, M., Asunis, I., Caria, C. A., Perseu, L., Shah, M., Crossley, M., Moi, P., et al. (2023) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2023.09.002 · Cited by 3
“However, these cells tend to have high background levels of HbF. 71 Insummary,miRNAsequencingoffetalliver murinecellsshowedthat miR-365-3p is overexpressed in BCL11A -null mice.”
BackgroundSelf-citationCreating New Cis-Regulatory Elements of HBD to Reactivate Delta-Globin
Chen, L., Liu, D., Hong, W., Xu, L., Cheng, L., Luo, Y., Xu, H. M., Li, X., Fang, J., & Li, X. (2025) · Human Gene Therapy · doi:10.1089/hum.2024.186 · Cited by 3
Takezaki, M., Li, Y., Xu, H., Patel, N., Lucas, R., Cerbone, R. E., Koti, S., Hendrick, C. L., Junker, L. H., & Pace, B. S. (2025) · PLoS ONE · doi:10.1371/journal.pone.0323550 · Cited by 3
Beyond transfusions and transplants: genomic innovations rewriting the narrative of thalassemia
Shi, L., Yan, X., Xia, Y., Zhao, Y., Zhu, X., Li, Q., & Xu, Z. (2025) · Annals of Hematology · doi:10.1007/s00277-025-06548-y · Cited by 6
“ZBTB7A/LRF represses γ-globin via a BCL11A-independent NuRD complex [103 , 104], while KLF1 promotes β-globin expression and suppresses γ-globin by activating BCL11A/LRF [105].”
The future of academic haematology
Hay, D., Hatton, C. S. R., & Weatherall, D. J. (2016) · British Journal of Haematology · doi:10.1111/bjh.14472 · Cited by 3
Gemmo, C., Breveglieri, G., Marzaro, G., Lampronti, I., Cosenza, L. C., Gasparello, J., Zuccato, C., Fabbri, E., Borgatti, M., Chilin, A., et al. (2019) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-019-01987-9 · Cited by 3
Multi-Locus Models to Address Hb F Variability in Portuguese β-Thalassemia Carriers
Manco, L., Bento, C., Relvas, L., Cunha, E., Pereira, J., Moreira, V., Álvarez, M., Maia, T. M., & Ribeiro, M. L. (2020) · Hemoglobin · doi:10.1080/03630269.2020.1753766 · Cited by 3
“BCL11A does not interact directly with the c-globin promoter but targets intergenic region(s), the LCR, and sequences between HBG1 and HBD [13].”
BackgroundTargeting ZNF410 as a potential β-hemoglobinopathy therapy
Tumburu, L., & Thein, S. L. (2021) · Nature Genetics · doi:10.1038/s41588-021-00817-y · Cited by 3
Yang, Y., Xiao, L., Xue, Y., Idris, M. O., Liu, J., Pei, D., Shi, Y., Liao, B., & Li, F. (2023) · FEBS Journal · doi:10.1111/febs.16789 · Cited by 3
Activation of γ-globin expression by LncRNA-mediated ERF promoter hypermethylation in β-thalassemia
Bao, X., Gao, Y., Wang, Z., Ye, Y., Chen, D., Zuo, Y., Zhao, C., & Xu, X. (2024) · Clinical Epigenetics · doi:10.1186/s13148-023-01614-6 · Cited by 3
“Several modulators, such as transcription factors (TFs) BCL11A and LRF, have been uncovered to regulate HbF expression by directly binding to γ-globin promoter [1, 2].”
BackgroundSong, M., Wei, X., Luo, H., Wang, J., Ye, Y., Qin, L., Niu, C., Long, Y., Wang, X., Shao, C., et al. (2025) · Blood Advances · doi:10.1182/bloodadvances.2024013695 · Cited by 3
“11 Collectively, BCL11A and ZBTB7A are responsible for most γ -globin gene silencing.”
Self-citationGenome Editing of Erythroid Cell Culture Model Systems
Yik, J. J., Crossley, M., & Quinlan, K. G. R. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-7428-3_15 · Cited by 2
Self-citationGaripler, G., Lu, C., Morrissey, A., López-Zepeda, L. S., Vidal, S. E., Aydın, B., Stadtfeld, M., Ohler, U., Mahony, S., Sanjana, N. E., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.23.391771 · Cited by 3
“ZBTB TFs are also known to interact with the subunits of histone deacetylase complexes (David et al., 1998; Maeda, 2016; Masuda et al., 2016).”
BackgroundFelder, A.-K., Tjalsma, S. J. D., Verhagen, H. J. M. P., Majied, R., Verstegen, M. J. A. M., Verheul, T. C. J., Mohnani, R., Gremmen, R., Krijger, P. H. L., Philipsen, S., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.01.13.632719 · Cited by 3
The BCL11A transcription factor stimulates the enzymatic activities of the OGG1 DNA glycosylase
Petrachkova, T., Солдаткина, О. И., Leduy, L., & Nepveu, A. (2024) · Biological Chemistry · doi:10.1515/hsz-2024-0088 · Cited by 2
MYB represses ζ-globin expression through upregulating ETO2
Dong, Z., Ye, Y., Zhang, W., Luo, H., Li, J., Zhang, Q., Zhang, X., Guo, X., & Xu, X. (2024) · Acta Biochimica et Biophysica Sinica · doi:10.3724/abbs.2024239 · Cited by 2
“For CRISPR editing in HUDEP - 2 and CD34 + HSPCs, sgRNAs were synthesized by GenScript as previously described [10,23].”
A one-base therapeutic insertion in the HBG2 distal promoter reactivates γ-globin expression
Bao, X., Gao, Y., Chen, X., Wang, Z., Feng, X., Wang, L., Du, J., Ye, Y., Chen, F., Du, L., et al. (2025) · Experimental Hematology and Oncology · doi:10.1186/s40164-025-00626-7 · Cited by 2
“In recent years, an increasing number of HbF regulatory factors have been discovered [4–11], among which transcription factors (TFs) represented by BCL11A and LRF/ZBTB7A are known to repress the expression of γ-globin through binding to cis -acting elements in γ-globin promoter [6, 12].”
Dan-Dukor, G., Shang, S., Leighton, G. O., Travis, C. R., Schwochert, T. D., Agrawal, P., Ajasa, O., Li, T., Waters, M. L., Ginder, G. D., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf439 · Cited by 2
Genome Reorganization during Erythroid Differentiation
Ryzhkova, A. S., & Баттулин, Н. Р. (2021) · Genes · doi:10.3390/genes12071012 · Cited by 2
“In addition to the well-known regulators of erythropoiesis, previously identified via bulk RNAseq in cultured erythroid cells, e.g., KLF1, GATA1, NFE2, BCL11A, LRF, TET2/3, and MYB [49,50], a set of novel regulatory genes have been recognized, that can potentially play a key role in regulating of terminal differentiat…”
BackgroundLy, L. C., Yang, Y., Li, F., Crossley, M., Shi, Y., & Quinlan, K. G. R. (2022) · STAR Protocols · doi:10.1016/j.xpro.2022.101598 · Cited by 2
Self-citationFerrer, A., Duffy, P. E., Olson, R. J., Meiners, M. A., Schultz‐Rogers, L. E., Macke, E. L., Safgren, S. L., Morales‐Rosado, J. A., Cousin, M. A., Oliver, G. R., et al. (2024) · Human Genetics · doi:10.1007/s00439-024-02664-3 · Cited by 2
“Furthermore, given the evidence that ZBTB7A transcriptionally represses fetal hemoglobin (HbF), (Masuda 2016) clinical testing of HbF was pursued indicating significantly increased levels in both the proband and the affected brother (8.4 and 4% respectively), consistent with previously described…”
InfluentialEryDB: A Transcriptomic Profile Database for Erythropoiesis and Erythroid-related Diseases
Zheng, G., Wu, S., Zhang, Z., Xin, Z., Zhang, L., Zhao, S., Wu, J., Liu, Y., Li, M., Ruan, X., et al. (2024) · Genomics Proteomics & Bioinformatics · doi:10.1093/gpbjnl/qzae029 · Cited by 2
“…in the Disease module, researchers can easily examine the gene expression changes under certain pathological conditions for blood disease diagnosis [38–41], and in the Compounds module, users can obtain information about the small molecules that promote or inhibit erythroid differentiation.”
Post-GWAS Validation of Target Genes Associated with HbF and HbA2 Levels
Caria, C. A., Faà, V., Porcu, S., Marongiu, M. F., Poddie, D., Perseu, L., Meloni, A., Vaccargiu, S., & Ristaldi, M. S. (2024) · Cells · doi:10.3390/cells13141185 · Cited by 2
“…increasing HbF levels has been extensively proven, and key regulators of γ -globin gene (hemoglobin subunit gamma 1/2 [ HBG1/2 [MIM: 142200/142250]) expression, such as BCL11 transcription factor A (BCL11A) or zinc finger and BTB domain-containing 7A (ZBTB7A/LRF), have been identified [14–17 , 21].”
BackgroundZha, J., Chen, Y., Cao, F., Zhong, J., Yu, X., & Wu, H. (2024) · International Journal of Developmental Neuroscience · doi:10.1002/jdn.10371 · Cited by 2
“Meanwhile, it has been demonstrated to be a crucial regulator influencing the switch in haemoglobin types and the suppression of HbF (Basak et al., 2015) (Masuda et al., 2016).”
Huang, S., Wu, J., Yang, Y., Zhu, M., Chen, L., Zhang, S., Yang, Y., Sun, X., & Xie, Y. (2025) · Cell Biochemistry and Biophysics · doi:10.1007/s12013-025-01776-5 · Cited by 2
“Therefore, we chose the ZFP64 gene as a research target and performed CRISPR/Cas9 knockout to preliminarily test whether reduced ZFP64 mRNA expression could effectively increase HbF levels [27, 28].”
Xue, Y., Su, J., Chao, Y., Liu, L., Lin, X., Xiang, Y., Ho, M. K., Su, Z., Chen, J., Luo, Z., et al. (2026) · Advanced Science · doi:10.1002/advs.202518084 · Cited by 3
Using microarray analysis to identify genes and pathways that regulate fetal hemoglobin levels
Jia, S., Jia, W., Yu, S., Hu, Y., & He, Y. (2019) · Annals of Human Genetics · doi:10.1111/ahg.12346 · Cited by 2
“HBS1L-MYB, BCL11A, and KLF1 regulate γ-globin gene (HBG1/2) expression and influence HbF levels (Masuda et al., 2016; Sankaran, 2011; Xu et al., 2010).”
BackgroundGao, J., Liu, J., Zhang, L., Zhang, Y., Guo, Q., Li, Y., Tong, J., Wang, H., Zhou, J., Zhu, F., et al. (2019) · Experimental Cell Research · doi:10.1016/j.yexcr.2019.111780 · Cited by 2
The Novel Role of the B-Cell Lymphoma/Leukemia 11A (BCL11A) Gene in β-Thalassaemia Treatment
Lai, M. I., & Ahmed, N. H. M. (2022) · Cardiovascular & Haematological Disorders - Drug Targets · doi:10.2174/1871529x23666230123140926 · Cited by 3
Metadata
- Authors
- Masuda, T., Wang, X., Maeda, M., Canver, M. C., Sher, F., Funnell, A. P. W., Fisher, C., Suciu, M., Martyn, G. E., Norton, L. J., Zhu, C., Kurita, R., Nakamura, Y., Xu, J., Higgs, D. R., Crossley, M., Bauer, D. E., Orkin, S. H., Kharchenko, P. V., & Maeda, T.
- Affiliations
- Brigham and Women's Hospital (US)
- Harvard University (US)
- Boston Children's Hospital (US)
- UNSW Sydney (AU)
- Medical Research Council, Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, Oxford University, Oxford, UK.
- University of Oxford (GB)
- RIKEN BioResource Research Center (JP)
- University of Tsukuba (JP)
- Corresponding author
- Kharchenko, Peter V.
- Maeda, Takahiro
- ORCID
- Venue
- Science
- Published
- 2016-01-15
- Volume
- 351
- Issue
- 6270
- Pages
- 285-289
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC4778394
- OpenAlex
- W2266790363
- Semantic Scholar
- c79067255bc10df384cd93d45af5c2fd24b7b528
- Cited by
- 373
- References
- 64
- Citations by year
- 2026: 27 · 2025: 34 · 2024: 51 · 2023: 34 · 2022: 34 · 2021: 54 · 2020: 44 · 2019: 24 · 2018: 26 · 2017: 27 · 2016: 16
- FWCI
- 22.49
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) (F30DK103359-01A1)
- NIDDK Career Development (K08DK093705)
- Doris Duke Charitable Foundation Innovations in Clinical Research (2013137)
- Ellison Medical Foundation (AG-NS-0965-12)
- NIH (P01HL032262, P30DK049216, 5K25AG037596, R01 AI084905, R56 DK105001)
- American Society of Hematology Bridge Program
- Topics
- Health Sciences › Medicine › Genetics (clinical) › Hemoglobinopathies and Related Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Hemoglobin structure and function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- fetal hemoglobin, BCL11A, transcriptional repression, nucleosome density, sickle cell disease, thalassemia, hemoglobinopathies, fetal hemoglobin induction
- MeSH terms
- Anemia, Sickle Cell, Animals, Carrier Proteins, Cell Line, Chromatin, DNA-Binding Proteins, Erythroblasts, Erythropoiesis, Fetal Hemoglobin, Humans, Nuclear Proteins, Repressor Proteins, Thalassemia, Transcription Factors, Sequence Deletion, Mice, Knockout, Gene Silencing, Mice, gamma-Globins
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