Target- and resistance-based mechanistic studies with TP-434, a novel fluorocycline antibiotic
Open accessAbstract
TP-434 is a novel, broad-spectrum fluorocycline antibiotic with activity against bacteria expressing major antibiotic resistance mechanisms, including tetracycline-specific efflux and ribosomal protection. The mechanism of action of TP-434 was assessed using both cell-based and in vitro assays. In Escherichia coli cells expressing recombinant tetracycline resistance genes, the MIC of TP-434 (0.063 μg/ml) was unaffected by tet (M), tet (K), and tet (B) and increased to 0.25 and 4 μg/ml in the presence of tet (A) and tet (X), respectively. Tetracycline, in contrast, was significantly less potent (MIC ≥ 128 μg/ml) against E. coli cells when any of these resistance mechanisms were present. TP-434 showed potent inhibition in E. coli in vitro transcription/translation (50% inhibitory concentration [IC 50 ] = 0.29 ± 0.09 μg/ml) and [ 3 H]tetracycline ribosome-binding competition (IC 50 = 0.22 ± 0.07 μM) assays. The antibacterial potencies of TP-434 and all other tetracycline class antibiotics tested were reduced by 4- to 16-fold, compared to that of the wild-type control strain, against Propionibacterium acnes strains carrying a 16S rRNA mutation, G1058C, a modification that changes the conformation of the primary binding site of tetracycline in the ribosome. Taken together, the findings support the idea that TP-434, like other tetracyclines, binds the ribosome and inhibits protein synthesis and that this activity is largely unaffected by the common tetracycline resistance mechanisms.
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Written from the paper’s full text.
TL;DR
TP-434 is a novel fluorocycline that inhibits E. coli translation and binds the ribosome, with activity largely unaffected by common tetracycline resistance mechanisms. However, TP-434 MIC still rises with tet(A), tet(X), and a 16S rRNA G1058C mutation.
Key findings
- In an E. coli-coupled in vitro transcription/translation assay, TP-434 had an IC50 of 0.29 ± 0.09 μg/ml, while tetracycline had an IC50 of 1.26 ± 0.48 μg/ml. Addition of purified Tet(M) did not affect TP-434 (0.27 ± 0.09 μg/ml) but increased tetracycline’s IC50 5-fold to 6.50 ± 3.3 μg/ml.
- TP-434 competed with [3H]tetracycline for 70S ribosome binding with an IC50 of 0.22 ± 0.07 μM; tigecycline had a similar IC50 (0.22 ± 0.08 μM), and tetracycline was ~14-fold less potent (IC50 = 3.00 ± 1.15 μM). Erythromycin up to 100 μM did not compete.
- Against isogenic E. coli DH10B expressing resistance genes, TP-434 MIC was 0.063 μg/ml for lacZ, tet(M), and tet(B); 0.031 μg/ml for tet(K); 0.25 μg/ml for tet(A); and 4 μg/ml for tet(X). Tetracycline MIC was ≥128 μg/ml with each resistance mechanism.
- In P. acnes, strains SW101T and P:413 carrying the 16S rRNA G1058C mutation had TP-434 MICs of 1 μg/ml versus 0.063 μg/ml for wild-type ATCC 6919; all tetracycline-class antibiotics tested showed 4- to 16-fold reduced potency against the mutant strains.
Methods
- Mechanistic assays: E. coli-coupled in vitro transcription/translation with a firefly luciferase readout, with and without purified Tet(M) at 2.75 μM; [3H]tetracycline ribosome-binding competition using 0.4 μM E. coli 70S ribosomes and 8 μM [3H]tetracycline.
- Susceptibility testing: MIC assays against E. coli DH10B expressing recombinant tet(A), tet(B), tet(K), tet(M), tet(X), or lacZ control, performed by CLSI methods with ampicillin and arabinose induction; P. acnes strains ATCC 6919, SW101 CDA, SW101T, and P:413 tested anaerobically in Wilkins-Chalgren broth.
- Analysis: IC50s were averaged from at least two independent experiments; MIC assays were performed at least twice, with representative results reported.
Limitations
- Not stated in the paper (no explicit limitations section).
- Evident from the text: mechanistic assays use E. coli in vitro translation and purified ribosomes, and resistance testing uses recombinant isogenic E. coli plus a small set of P. acnes strains, so clinical generalizability is limited.
- Evident from the text: TP-434 activity is still reduced by tet(A) (4-fold MIC increase to 0.25 μg/ml), tet(X) (MIC 4 μg/ml), and the G1058C mutation (MIC 1 μg/ml), so resistance is not fully overcome.
Model-written summary. Check it against the paper before relying on it.
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- Findingown data§ RESULTS AND DISCUSSION
Tigecycline susceptibility (MIC = 0.063 μg/ml) was unaffected by tet(M), tet(K), and tet(B).
“Susceptibility to tigecycline (MIC = 0.063 μg/ml) was unaffected by tet(M), tet(K), and tet(B)”
Quote in the paperNot a substantial claim - Findingown data§ RESULTS AND DISCUSSION
The MIC of ceftriaxone remained unaffected by overexpression of any of the tetracycline resistance mechanisms.
“The MIC of ceftriaxone, a nontetracycline control, remained unaffected by the overexpression of any of the tetracycline resistance mechanisms.”
Quote in the paperNot a substantial claim - Findingcitation§ RESULTS AND DISCUSSION
The tet(A) gene expressed in the present study had the same variations as the Tn1721-associated tet(A) gene, with amino acids Ala-201, Ser-202, and Phe-203 rather than Ser-201, Phe-202, and Val-203 of the RP1 tet(A) sequence.
“The tet(A) gene expressed in the present study had the same variations as the Tn1721-associated tet(A) gene, where the amino acids are Ala-201, Ser-202, and Phe-203 rather than those of the tet(A) sequence from E. coli plasmid RP1, Ser-201, Phe-202, and Val-203”
Quote in the paperSubstantial claim - Findingown data§ Abstract
In E. coli cells expressing recombinant tet(A), the MIC of TP-434 increased to 0.25 μg/ml (4-fold increase).
“increased to 0.25 and 4 μg/ml in the presence of tet(A) and tet(X), respectively.”
- Also stated in: § RESULTS AND DISCUSSION · plain
“a 4-fold increase in TP-434 MIC (0.25 μg/ml) was observed in the presence of tet(A) expression”
Quote in the paperSubstantial claim - Also stated in: § RESULTS AND DISCUSSION · plain
- Findingown data§ Abstract
Tetracycline was significantly less potent (MIC ≥ 128 μg/ml) against E. coli cells when any of these resistance mechanisms were present.
“Tetracycline, in contrast, was significantly less potent (MIC ≥ 128 μg/ml) against E. coli cells when any of these resistance mechanisms were present.”
Quote in the paperSubstantial claim
- Findingown data§ RESULTS AND DISCUSSION
In E. coli expressing tet(A), tigecycline MIC increased 16-fold to 1 μg/ml.
“a 16-fold increase (MIC = 1 μg/ml) was observed in the presence of tet(A) for tigecycline”
Quote in the paperSubstantial claim - Findingown data§ RESULTS AND DISCUSSION
A ≥64-fold increase in MIC value, relative to the lacZ control strain, was associated with overexpression of each of the resistance genes for tetracycline.
“a ≥64-fold increase in MIC value, relative to the lacZ control strain, was associated with overexpression of each of the resistance genes.”
Quote in the paperSubstantial claim - Findingown data§ RESULTS AND DISCUSSION
All P. acnes strains were similarly susceptible to penicillin (MIC ≤ 0.016 μg/ml).
“all strains were similarly susceptible to penicillin (MIC ≤ 0.016 μg/ml; Table 2).”
Quote in the paperNot a substantial claim - Findingown data§ RESULTS AND DISCUSSION
Tigecycline had an IC50 of 0.22 ± 0.08 μM in the [3H]tetracycline competition assay.
“Tigecycline had a similar IC50 (0.22 ± 0.08 μM)”
Quote in the paperNot a substantial claim - Findingown data§ RESULTS AND DISCUSSION
Tetracycline was ~14-fold less potent (IC50 = 3.00 ± 1.15 μM) in the [3H]tetracycline competition assay.
“tetracycline was ∼14-fold less potent (IC50 = 3.00 ± 1.15 μM)”
Quote in the paperSubstantial claim - Findingown data§ Abstract
In E. coli cells expressing recombinant tetracycline resistance genes, the MIC of TP-434 (0.063 μg/ml) was unaffected by tet(M), tet(K), and tet(B).
“In Escherichia coli cells expressing recombinant tetracycline resistance genes, the MIC of TP-434 (0.063 μg/ml) was unaffected by tet(M), tet(K), and tet(B)”
- Also stated in: § RESULTS AND DISCUSSION · plain
“The MIC of TP-434 (0.063 μg/ml) was unaffected by overexpression of tet(K) and tet(B)”
- Also stated in: § RESULTS AND DISCUSSION · plain
“activity of TP-434 was also immune to the cell-based overexpression of tet(M)”
Quote in the paperSubstantial claim - Also stated in: § RESULTS AND DISCUSSION · plain
- Findingown data§ RESULTS AND DISCUSSION
A GenBank database search revealed that plasmid- and chromosomally associated tet(A) genes containing the Tn1721 sequence are present in a wide variety of Gram-negative organisms.
“A GenBank database search revealed that plasmid- and chromosomally associated tet(A) genes containing the sequence found in Tn1721 are present in a wide variety of Gram-negative organisms”
Quote in the paperSubstantial claim - Findingown data§ Abstract
The antibacterial potencies of TP-434 and all other tetracycline class antibiotics tested were reduced by 4- to 16-fold, compared to wild-type control strain, against P. acnes strains carrying 16S rRNA mutation G1058C.
“The antibacterial potencies of TP-434 and all other tetracycline class antibiotics tested were reduced by 4- to 16-fold, compared to that of the wild-type control strain, against Propionibacterium acnes strains carrying a 16S rRNA mutation, G1058C”
Quote in the paperSubstantial claim - Findingown data§ RESULTS AND DISCUSSION
Overexpression of tet(X) increased MIC values for TP-434 and tigecycline to 4 and 2 μg/ml, respectively.
“Overexpression of tet(X) increased MIC values for TP-434 and tigecycline to 4 and 2 μg/ml, respectively.”
Quote in the paperSubstantial claim - Findingown data§ Abstract
In E. coli cells expressing recombinant tet(X), the MIC of TP-434 increased to 4 μg/ml.
“increased to 0.25 and 4 μg/ml in the presence of tet(A) and tet(X), respectively.”
- Also stated in: § RESULTS AND DISCUSSION · plain
“Overexpression of tet(X) increased MIC values for TP-434 and tigecycline to 4 and 2 μg/ml, respectively.”
Quote in the paperSubstantial claim - Also stated in: § RESULTS AND DISCUSSION · plain
- Findingown data§ RESULTS AND DISCUSSION
Both P. acnes isolates SW101T and P:413 containing the G1058C mutation exhibited elevated MIC values for all tetracycline antibiotics compared to strains ATCC 6919 and SW101CDA.
“Results showed that both isolates, SW101T and P:413, containing the G1058C mutation exhibited elevated MIC values for all tetracycline antibiotics compared to those of strains ATCC 6919 and SW101CDA”
Quote in the paperSubstantial claim - Findingown data§ RESULTS AND DISCUSSION
Erythromycin up to 100 μM failed to compete with [3H]tetracycline for ribosome binding.
“Erythromycin tested up to 100 μM failed to compete with [3H]tetracycline”
Quote in the paperSubstantial claim - Findingown data§ Abstract
TP-434 inhibited E. coli in vitro transcription/translation with IC50 = 0.29 ± 0.09 μg/ml.
“TP-434 showed potent inhibition in E. coli in vitro transcription/translation (50% inhibitory concentration [IC50] = 0.29 ± 0.09 μg/ml)”
- Also stated in: § RESULTS AND DISCUSSION · plain
“The concentration of TP-434 showing 50% inhibition (IC50) of luminescence compared to that of the untreated controls was 0.29 ± 0.09 μg/ml.”
Quote in the paperSubstantial claim - Also stated in: § RESULTS AND DISCUSSION · plain
- Findingown data§ RESULTS AND DISCUSSION
Erythromycin MIC values were elevated in SW101 CDA (MIC > 32 μg/ml) and SW101T (MIC = 32 μg/ml) compared to ATCC 6919 (MIC = 0.125 μg/ml) and P:413 (MIC = 0.063 μg/ml).
“erythromycin MIC values were elevated in SW101 CDA (MIC > 32 μg/ml) and SW101T (MIC = 32 μg/ml) compared to those in strains ATCC 6919 (MIC = 0.125 μg/ml) and P:413 (MIC = 0.063 μg/ml)”
Quote in the paperNot a substantial claim - Premisecitation§ Abstract
TP-434 is a novel fluorocycline antibiotic.
“TP-434 is a novel, broad-spectrum fluorocycline antibiotic”
- Also stated in: § INTRODUCTION · plain
“TP-434, a novel fluorocycline antibiotic, was made by total synthesis”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [8] 8. Clark RB, et al. 2012. Fluorocyclines. 2. Optimization of the C-9 side-chain for antibacterial activity and oral efficacy. J. Med. Chem. 55:606–622 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
- cites [18] 18. Hunt D, et al. 2010. TP-434 is a novel broad-spectrum Fluorocycline, abstr F1-2157. Abstr. 50th Intersci. Conf. Antimicrob. Agents Chemother American Society for Microbiology, Washington, DC [Google Scholar]
Not checked in the free run.
- cites [44] 44. Xiao XY, et al. 2012. Fluorocyclines. 1. 7-Fluoro-9-pyrrolidinoacetamido-6-demethyl-6-deoxytetracycline: a potent, broad spectrum antibacterial agent. J. Med. Chem. 55:597–605 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
- Also stated in: § INTRODUCTION · plain
- Interpretationown data§ RESULTS AND DISCUSSION
TP-434 is recognized to some extent by the Tet(A) pump.
“indicating that TP-434 is recognized to some extent by the Tet(A) pump.”
Quote in the paperSubstantial claim - Interpretationown data§ RESULTS AND DISCUSSION
Tigecycline is a substrate for Tet(A) efflux.
“indicating that tigecycline is a substrate for Tet(A) efflux.”
Quote in the paperSubstantial claim - Interpretationown data§ RESULTS AND DISCUSSION
The elevated MICs in G1058C mutants are consistent with at least a partial overlap of the binding sites of TP-434, tigecycline, and doxycycline.
“This finding is consistent with at least a partial overlap of the binding sites of TP-434, tigecycline, and doxycycline.”
Quote in the paperSubstantial claim - Interpretationcitation§ RESULTS AND DISCUSSION
TP-434 has a broad spectrum of activity against multidrug-resistant Gram-positive and Gram-negative pathogens, including tetracycline-resistant Enterobacteriaceae producing extended-spectrum β-lactamase(s) or carbapenemases.
“These properties impart to TP-434 a broad spectrum of activity against multidrug-resistant Gram-positive and Gram-negative pathogens, including tetracycline-resistant Enterobacteriaceae producing extended-spectrum β-lactamase(s) or carbapenemases (14, 38)”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [14] 14. Fyfe C, Grossman T, O'Brien W, Achorn C, Sutcliffe J. 2011. The novel broad-spectrum fluorocycline TP-434 is active against MDR Gram-negative pathogens, abstr P1149. Abstr. 21st Eur. Congr. Clin. Microbiol. Infect. Dis. [Google Scholar]
Not checked in the free run.
- cites [38] 38. Sutcliffe J, et al. 2010. In vitro activity of fluorocycline TP-434 against panels of recent bacterial clinical isolates, abstr F1-2158. Abstr. 50th Intersci. Conf. Antimicrob. Agents Chemother American Society for Microbiology, Washington, DC [Google Scholar]
Not checked in the free run.
- Rests on an assumption: The E. coli in vitro transcription/translation and ribosome-binding assays reflect TP-434's mechanism of action in other bacterial species.
- Rests on an assumption: The recombinant resistance genes expressed in E. coli DH10B reproduce the effects of the same resistance mechanisms in clinical pathogens.
- Interpretationown data§ RESULTS AND DISCUSSION
Novel modifications at positions C-7 and C-9 on the tetracyclic D ring of TP-434 appear to confer superior target-binding potency compared to legacy tetracyclines in the presence or absence of Tet(M).
“novel modifications at positions C-7 and C-9 on the tetracyclic D ring of TP-434 appear to confer superior target-binding potency compared to that of legacy tetracyclines in the presence or absence of a major tetracycline ribosomal protection mechanism Tet(M).”
Quote in the paperSubstantial claim - Interpretationown data§ RESULTS AND DISCUSSION
TP-434, tigecycline, and tetracycline bind to at least partially overlapping sites on the ribosome.
“These results imply that TP-434, tigecycline, and tetracycline bind to at least partially overlapping sites on the ribosome.”
Quote in the paperSubstantial claim - Interpretationown data§ Abstract
TP-434 has broad-spectrum activity against bacteria expressing major tetracycline resistance mechanisms, including tetracycline-specific efflux and ribosomal protection.
“TP-434 is a novel, broad-spectrum fluorocycline antibiotic with activity against bacteria expressing major antibiotic resistance mechanisms, including tetracycline-specific efflux and ribosomal protection.”
Quote in the paperSubstantial claim- Rests on an assumption: The E. coli in vitro transcription/translation and ribosome-binding assays reflect TP-434's mechanism of action in other bacterial species.
- Rests on an assumption: The recombinant resistance genes expressed in E. coli DH10B reproduce the effects of the same resistance mechanisms in clinical pathogens.
- Interpretationown data§ Abstract
The G1058C mutation changes the conformation of the primary binding site of tetracycline in the ribosome.
“a modification that changes the conformation of the primary binding site of tetracycline in the ribosome.”
- Also stated in: § RESULTS AND DISCUSSION · hedged
“Although G1058 is not part of the primary binding site for tetracycline, mutation to cytosine likely causes a conformational change, reducing the binding affinity of tetracycline for the 30S ribosomal subunit.”
Quote in the paperSubstantial claim - Also stated in: § RESULTS AND DISCUSSION · hedged
- Interpretationreasoning§ RESULTS AND DISCUSSION
Strains harboring tet(A) genes with reduced sensitivity to tigecycline may be more widespread than originally reported.
“Thus, strains harboring tet(A) genes with reduced sensitivity to tigecycline may be more widespread than originally reported.”
Quote in the paperSubstantial claim - Interpretationown data§ Abstract
TP-434's activity is largely unaffected by common tetracycline resistance mechanisms.
“and that this activity is largely unaffected by the common tetracycline resistance mechanisms.”
Quote in the paperSubstantial claim
- May combine two claims. 11
- Classified as probably not a substantial claim. 7
May combine two claims.
Findingown data§ AbstractTP-434 competed with [3H]tetracycline for ribosome binding with IC50 = 0.22 ± 0.07 μM.
“[3H]tetracycline ribosome-binding competition (IC50 = 0.22 ± 0.07 μM) assays.”
- Also stated in: § RESULTS AND DISCUSSION · plain
“TP-434 competed with [3H]tetracycline for ribosome binding (Fig. 3), with an IC50 of 0.22 ± 0.07 μM.”
Quote in the paperSubstantial claim- Also stated in: § RESULTS AND DISCUSSION · plain
May combine two claims.
Findingown data§ RESULTS AND DISCUSSIONWhen purified Tet(M) was added to the transcription/translation reaction, the IC50s of TP-434 and tigecycline were unaffected (0.27 ± 0.09 and 0.09 ± 0.04 μg/ml), whereas the IC50 for tetracycline increased 5-fold (6.50 ± 3.3 μg/ml).
“When purified Tet(M) was added to the transcription/translation reaction, the IC50s of both TP-434 and tigecycline were unaffected (0.27 ± 0.09 μg/ml and 0.09 ± 0.04 μg/ml, respectively), whereas the IC50 for tetracycline increased 5-fold (6.50 ± 3.3 μg/ml).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONMutations within helices h31 and h34 of 16S rRNA confer tetracycline resistance in H. pylori and P. acnes.
“mutations within helices h31 and h34 of 16S rRNA have been reported to confer tetracycline resistance in Helicobacter pylori and Propionibacterium acnes (31, 40).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [31] 31. Ross JI, Eady EA, Cove JH, Cunliffe WJ. 1998. 16S rRNA mutation associated with tetracycline resistance in a Gram-positive bacterium. Antimicrob. Agents Chemother. 42:1702–1705 [DOI] [PMC free article] [PubMed] [Google Scholar] source
Not checked in the free run.
- cites [40] 40. Trieber CA, Taylor DE. 2002. Mutations in the 16S rRNA genes of Helicobacter pylori mediate resistance to tetracycline. J. Bacteriol. 184:2131–2140 [DOI] [PMC free article] [PubMed] [Google Scholar] source
Not checked in the free run.
May combine two claims.
Interpretationown data§ RESULTS AND DISCUSSIONTP-434 has improved activity against major tetracycline resistance mechanisms and is 4-fold more potent than tigecycline in E. coli expressing Tn1721-associated tet(A).
“Further, TP-434 has improved activity against major tetracycline resistance mechanisms and is 4-fold more potent than tigecycline in E. coli expressing a widespread tetracycline efflux pump, Tn1721-associated tet(A).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown data§ MATERIALS AND METHODSResults in transcription/translation and binding assays are averages from at least two independent experiments.
“Results were reported as averages from at least two independent experiments.”
- Also stated in: § MATERIALS AND METHODS · plain
“Results presented are averages from at least two independent experiments.”
Quote in the paperNot a substantial claim- Also stated in: § MATERIALS AND METHODS · plain
May combine two claims.
Interpretationown data§ RESULTS AND DISCUSSIONThe RPP mechanism is specific to tetracycline, as linezolid IC50 was unaffected by Tet(M).
“The IC50 for linezolid, a nontetracycline control, was unaffected by the addition of Tet(M), substantiating that the RPP mechanism was specific to tetracycline.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown data§ MATERIALS AND METHODSOptimal preinduction conditions producing tetracycline MIC values of ≥128 μg/ml were identified for each strain in preliminary experiments.
“Optimal preinduction conditions producing tetracycline MIC values of ≥128 μg/ml were identified for each strain in preliminary experiments, in which temperatures and l-arabinose concentrations were varied.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown data§ MATERIALS AND METHODSMIC assays were performed at least twice, and results from a representative experiment are reported.
“Assays were performed at least twice, and results from a representative experiment are reported in Table 3.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisecitation§ INTRODUCTIONTP-434 contains the tetracyclic core scaffold common to other tetracycline antibiotics, with a fluorine atom at C-7 and a pyrrolidinoacetamido group at C-9 on the tetracyclic D ring.
“TP-434 contains the tetracyclic core scaffold common to other tetracycline antibiotics, with two unique modifications: a fluorine atom at position C-7 and a pyrrolidinoacetamido group at C-9 on the tetracyclic D ring (Fig. 1).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [8] 8. Clark RB, et al. 2012. Fluorocyclines. 2. Optimization of the C-9 side-chain for antibacterial activity and oral efficacy. J. Med. Chem. 55:606–622 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
- cites [18] 18. Hunt D, et al. 2010. TP-434 is a novel broad-spectrum Fluorocycline, abstr F1-2157. Abstr. 50th Intersci. Conf. Antimicrob. Agents Chemother American Society for Microbiology, Washington, DC [Google Scholar]
Not checked in the free run.
- cites [44] 44. Xiao XY, et al. 2012. Fluorocyclines. 1. 7-Fluoro-9-pyrrolidinoacetamido-6-demethyl-6-deoxytetracycline: a potent, broad spectrum antibacterial agent. J. Med. Chem. 55:597–605 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ INTRODUCTIONTigecycline has improved activity against both tetracycline-specific efflux and RPP mechanisms and is a more potent inhibitor of protein synthesis.
“The parenteral glycylcycline tigecycline, another semisynthetic derivative, was developed to have improved activity against both tetracycline-specific efflux and RPP mechanisms (26) and is a more potent inhibitor of protein synthesis.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [26] 26. Peterson LR. 2008. A review of tigecycline—the first glycylcycline. Int. J. Antimicrob. Agents 32(S4):S215–S222 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
May combine two claims.
Study design and conductown data§ MATERIALS AND METHODSThe constant presence of ampicillin and l-arabinose had no effect on MIC assay results; MIC values for all antibiotics tested against DH10B lacZ plasmid versus DH10B without ampicillin/l-arabinose were within 2-fold.
“To verify that the constant presence of ampicillin and l-arabinose had no effect on assay results, all antibiotics used in this study were tested against DH10B cells containing the lacZ plasmid (in the presence of 50 μg/ml ampicillin plus 1% l-arabinose) versus DH10B cells (without ampicillin and l-arabinose); MIC values obtained under both conditions were within 2-fold for all antibiotics tested,”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown data§ AbstractTP-434, like other tetracyclines, binds the ribosome and inhibits protein synthesis.
“Taken together, the findings support the idea that TP-434, like other tetracyclines, binds the ribosome and inhibits protein synthesis”
Quote in the paperSubstantial claimMay combine two claims.
Premisecitation§ INTRODUCTIONSemisynthetic tetracycline derivatives doxycycline and minocycline show improved activity versus tetracycline against tetracycline-specific efflux but remain susceptible to resistance by RPPs.
“Semisynthetic tetracycline derivatives, such as doxycycline and minocycline (Fig. 1), show improved activity versus tetracycline against tetracycline-specific efflux but remain susceptible to resistance by RPPs (39).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [39] 39. Thaker M, Spanogiannopoulos P, Wright GD. 2010. The tetracycline resistome. Cell. Mol. Life Sci. 67:419–431 [DOI] [PMC free article] [PubMed] [Google Scholar]
Not checked in the free run.
Classified as probably not a substantial claim. May combine two claims.
Premisecitation§ INTRODUCTIONTetracycline antibiotics bind to the bacterial 30S ribosomal subunit and prevent chain elongation by blocking aminoacyl-tRNA binding to the A site.
“Tetracycline antibiotics bind to the bacterial 30S ribosomal subunit and prevent chain elongation by blocking aminoacyl-tRNA binding to the A site (3, 21, 27).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [3] 3. Brodersen DE, et al. 2000. The structural basis for the action of the antibiotics tetracycline, pactamycin and hygromycin B on the 30S ribosomal subunit. Cell 103:1143–1154 [DOI] [PubMed] [Google Scholar] source
Not checked in the free run.
- cites [21] 21. Maxwell IH. 1967. Partial removal of bound transfer RNA from polysomes engaged in protein synthesis in vitro after addition of tetracycline. Biochim. Biophys. Acta 138:337–346 [DOI] [PubMed] [Google Scholar]
Not checked in the free run.
- cites [27] 27. Pioletti M, et al. 2001. Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J. 20:1829–1839 [DOI] [PMC free article] [PubMed] [Google Scholar] source
Not checked in the free run.
Classified as probably not a substantial claim.
Study design and conductown data§ MATERIALS AND METHODSCloned inserts were verified by sequencing and comparing with reported sequences in GenBank.
“Cloned inserts were verified by sequencing and comparing with reported sequences in GenBank”
Quote in the paperSubstantial claim
The paper relies on this without support.
The E. coli in vitro transcription/translation and ribosome-binding assays reflect TP-434's mechanism of action in other bacterial species.
“The mechanism of action of TP-434 was assessed using both cell-based and in vitro assays.”
“TP-434 inhibits translation and is unaffected by Tet(M).”
The paper relies on this without support.
The recombinant resistance genes expressed in E. coli DH10B reproduce the effects of the same resistance mechanisms in clinical pathogens.
“To determine the impact of specific tetracycline resistance genes in isogenic E. coli strains”
“These properties impart to TP-434 a broad spectrum of activity against multidrug-resistant Gram-positive and Gram-negative pathogens”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Third-generation tetracycline derivatives such as tigecycline display enhanced antimicrobial activity, overcoming efflux and ribosome protection mechanisms.
“The third generation of tetracycline derivatives, such as tigecycline (Tgc), display enhanced antimicrobial activity, overcoming efflux and ribosome protection mechanisms (6)(7)(8).”
From Structural basis for TetM-mediated tetracycline resistance (2012) · cites this paper as [8]
The attached C9-glycyl side chain of tigecycline would prevent access of the residues of loop III of TetM, and this steric hindrance contributes, together with the increased affinity of tigecycline, to explaining how tigecycline overcomes TetM-mediated resistance whereas tetracycline cannot.
“In contrast, the attached C9-glycyl side chain of Tgc would prevent access of the residues of loop III of TetM (Fig. 3 E and F), leading us to suggest that this steric hindrance contributes, together with the increased affinity of Tgc (7,8,27), to explaining how Tgc overcomes TetM-mediated resistance whereas tetracycline cannot (8).”
From Structural basis for TetM-mediated tetracycline resistance (2012) · cites this paper as [8]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
TP-434 IC50 standard deviation differs between text and Table 1
MinorFor the TP-434 IC50 of 0.27 μg/ml, the results text reports a standard deviation of 0.09 μg/ml, while Table 1 reports 0.16 μg/ml.
“the IC50s of both TP-434 and tigecycline were unaffected (0.27 ± 0.09 μg/ml and 0.09 ± 0.04 μg/ml, respectively)”
“TP-434 0.29 ± 0.09 0.27 ± 0.16”
Table 1 reverses the Tet(M) condition labels
MinorTable 1 labels the 1.26 μg/ml tetracycline IC50 as measured with Tet(M) and the 6.50 μg/ml value as measured without it. The results text says the opposite: adding Tet(M) increased the IC50 to 6.50 μg/ml. The condition labels appear to be reversed for the table.
“Antibiotic IC 50 (μg/ml) ±SD With Tet(M) Without Tet(M) TP-434 0.29 ± 0.09 0.27 ± 0.16 Tigecycline 0.08 ± 0.01 0.09 ± 0.04 Tetracycline 1.26 ± 0.48 6.50 ± 3.30 Linezolid 1.30 ± 0.28 1.08 ± 0.74”
“When purified Tet(M) was added to the transcription/translation reaction, the IC50s of both TP-434 and tigecycline were unaffected (0.27 ± 0.09 μg/ml and 0.09 ± 0.04 μg/ml, respectively), whereas the IC50 for tetracycline increased 5-fold (6.50 ± 3.3 μg/ml).”
Reported MICs exceed the stated assay concentration range
MinorThe methods state that MIC assay drug concentrations went only up to 32 μg/ml, but Table 3 reports MICs of 64 and 128 μg/ml and values greater than 128 μg/ml. Those values cannot be determined from the stated range.
“MIC assays with drug concentrations ranging from 0.016 to 32 μg/ml were incubated at 35°C for 18 to 20 h, and results were read visually.”
“Doxycycline 2 64 4 32 32 16 Minocycline 0.5 64 1 8 16 4 Tetracycline 2 128 128 >128 >128 128”
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- Authors
- Grossman, T. H., Starosta, A. L., Fyfe, C., O'Brien, W., Rothstein, D. M., Mikolajka, A., Wilson, D. N., & Sutcliffe, J. A.
- Affiliations
- Tetraphase Pharmaceuticals (United States) (US)
- Ludwig-Maximilians-Universität München (DE)
- Center for Integrated Protein Science Munich (DE)
- Venue
- Antimicrobial Agents and Chemotherapy
- Publisher
- American Society for Microbiology
- Published
- 2012-05
- Volume
- 56
- Issue
- 5
- Pages
- 2559-2564
- ISSN
- 0066-4804 (ISSN-L)
- 1098-6596
- PMC
- PMC3346605
- OpenAlex
- W2163177484
- Semantic Scholar
- b655674a6d32982275d3dbbd3f3ff85d545567c6
- Cited by
- 162
- References
- 44
- Citations by year
- 2026: 8 · 2025: 8 · 2024: 13 · 2023: 9 · 2022: 5 · 2021: 14 · 2020: 14 · 2019: 19 · 2018: 13 · 2017: 5 · 2016: 16 · 2015: 6 · 2014: 8 · 2013: 18 · 2012: 5
- FWCI
- 5.46
- Type
- journal article
- Language
- en
- Update notices
- correction (2015-08-14)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Antimicrobial Agents and Chemotherapy (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
- Health Sciences › Medicine › Infectious Diseases › Antimicrobial Resistance in Staphylococcus
- Health Sciences › Medicine › Pharmacology › Antibiotics Pharmacokinetics and Efficacy
- Keywords
- tetracycline resistance, tetracycline resistance genes, tetM, tetK, tetB, tetA, tetX, Escherichia coli, Propionibacterium acnes, ribosome binding, protein synthesis inhibition, mechanism of action, antibiotic resistance
- MeSH terms
- Anti-Bacterial Agents, Bacterial Proteins, Binding, Competitive, Escherichia coli, Microbial Sensitivity Tests, Mutation, Propionibacterium acnes, Ribosomes, RNA, Ribosomal, 16S, Tetracycline, Tetracycline Resistance, Tetracyclines, Transformation, Bacterial, Protein Biosynthesis, Gene Expression
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