Characterization of a Highly Evolved Vaccine-Derived Poliovirus Type 3 Isolated from Sewage in Estonia
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Two types of vaccine-derived polioviruses have been recently designated to emphasize the different origins of the evolved viruses: circulating vaccine-derived polioviruses (cVDPV) associated with outbreaks of paralytic disease and strains isolated from chronically infected immunodeficient individuals (iVDPV). We describe here a type 3 VDPV (PV3/EST/02/E252; later E252) isolated from sewage collected in Tallinn, Estonia, in October 2002. Due to aberrant properties in subtyping, the virus was subjected to detailed characterization. Partial genomic sequencing suggested that the closest relative was the oral vaccine strain PV3/Sabin, but the two virus strains shared only 86.7% of the 900 nucleotides (nt) coding for the capsid protein VP1. Phylogenetic analysis of the nearly complete genome [nt 19 to poly(A)] revealed multiple nucleotide substitutions throughout the genome and a possible Sabin 3/Sabin 1-recombination junction site in the 2C coding region. A calculation based on the estimated mutation frequency of the P1 region of polioviruses suggested that the E252 virus might have replicated in one or more individuals for approximately 10 years. No persons chronically excreting poliovirus are known in Estonia. Amino acid substitutions were seen in all known antigenic sites, which was consistent with the observed aberrant antigenic properties of the virus demonstrated by both monoclonal antibodies and human sera from vaccinated children. In spite of the apparent transmission potential, no evidence was obtained for circulation of the virus in the Estonian population.
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All VDPV isolates characterized so far have antigenic properties distinct from the original Sabin strains.
“Moreover, all VDPV isolates characterized so far have antigenic properties distinct from the original Sabin strains (12, 71, 84, 117, 177, 180, 226).”
From VACCINE-DERIVED POLIOVIRUSES AND THE ENDGAME STRATEGY FOR GLOBAL POLIO ERADICATION (2005) · cites this paper as [12]
Cites
PHYLIP-Phylogeny inference package (Version 3.2)
Felsenstein, J. (1989) · Cladistics · Cited by 17,848 · see citing works
Lole, K. S., Bollinger, R. C., Paranjape, R., Gadkari, D. A., Kulkarni, S., Novak, N. G., Ingersoll, R., Sheppard, H. W., & Ray, S. C. (1999) · Journal of Virology · doi:10.1128/jvi.73.1.152-160.1999 · Cited by 2,700 · see citing works
RASMOL: biomolecular graphics for all
Sayle, R. A. (1995) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)89080-5 · Cited by 2,587 · see citing works
Kew, O., Morris-Glasgow, V., Landaverde, M., Burns, C., Shaw, J., Garib, Z., André, J., Blackman, E., Freeman, C. J., Jorba, J., et al. (2002) · Science · doi:10.1126/science.1068284 · Cited by 600 · see citing works
Filman, D. J., Syed, R., Chow, M., Macadam, A. J., Minor, P. D., & Hogle, J. M. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb03541.x · Cited by 364 · see citing works
Geographic distribution of wild poliovirus type 1 genotypes
Rico-Hesse, R., Pallansch, M. A., Nottay, B. K., & Kew, O. M. (1987) · Virology · doi:10.1016/0042-6822(87)90001-8 · Cited by 328 · see citing works
History of Sabin attenuated poliovirus oral live vaccine strains
Sabin, A. B., & Boulger, L. R. (1973) · Journal of Biological Standardization · doi:10.1016/0092-1157(73)90048-6 · Cited by 318 · see citing works
Antigenic Structure of Polioviruses of Serotypes 1, 2 and 3
Minor, P. D., Ferguson, M. A. J., Evans, D. M. A., Almond, J. W., & Icenogle, J. P. (1986) · Journal of General Virology · doi:10.1099/0022-1317-67-7-1283 · Cited by 306 · see citing works
Circulation of endemic type 2 vaccine-derived poliovirus in Egypt from 1983 to 1993
Yang, C.-F., Naguib, T., Yang, S.-J., Nasr, E., Jorba, J., Ahmed, N., Campagnoli, R., van der Avoort, H., Shimizu, H., Yoneyama, T., et al. (2003) · Journal of Virology · doi:10.1128/jvi.77.15.8366-8377.2003 · Cited by 233 · see citing works
Prolonged replication of a type 1 vaccine-derived poliovirus in an immunodeficient patient
Kew, O. M., Sutter, R. W., Nottay, B. K., McDonough, M. J., Prevots, D. R., Quick, L., & Pallansch, M. A. (1998) · Journal of Clinical Microbiology · doi:10.1128/jcm.36.10.2893-2899.1998 · Cited by 213 · see citing works
Balanant, J., Guillot, S., Candrea, A., Delpeyroux, F., & Crainic, R. (1991) · Virology · doi:10.1016/0042-6822(91)90434-d · Cited by 160 · see citing works
Martín, J., Dunn, G., Hull, R., Patel, V., & Minor, P. D. (2000) · Journal of Virology · doi:10.1128/jvi.74.7.3001-3010.2000 · Cited by 160 · see citing works
Molecular epidemiology of polioviruses
Kew, O. M., Mulders, M. N., Lipskaya, G. Y., da Silva, E. E., & Patlansch, M. A. (1995) · Seminars in Virology · doi:10.1016/s1044-5773(05)80017-4 · Cited by 157 · see citing works
Furlone, M., Guillot, S., Otelea, D., Balanant, J., Candrea, A., & Crainic, R. (1993) · Virology · doi:10.1006/viro.1993.1468 · Cited by 148 · see citing works
Pöyry, T. A. A., Stenvik, M., & Hovi, T. (1988) · Applied and Environmental Microbiology · doi:10.1128/aem.54.2.371-374.1988 · Cited by 146 · see citing works
Self-citationThe nucleotide sequence of poliovirus type 3 leon 12 a1b: comparison with poliovirus type 1
Stanway, G., Cann, A. J., Hauptmann, R., Hughes, P., Clarke, L. D., Mountford, R., Minor, P. D., Schild, G. C., & Almond, J. W. (1983) · Nucleic Acids Research · doi:10.1093/nar/11.16.5629 · Cited by 142 · see citing works
Recombinant Vaccine–Derived Poliovirus in Madagascar
Rousset, D., Rakoto-Andrianarivelo, M., Razafindratsimandresy, R., Randriamanalina, B., Guillot, S., Balanant, J., Mauclère, P., & Delpeyroux, F. (2003) · Emerging Infectious Diseases · doi:10.3201/eid0907.020692 · Cited by 138 · cited 1× · see citing works
“In the Philippines, type 1 cVDPV was involved in three poliomyelitis cases in 2001 (6, 8), and in Madagascar in 2002, type 2 cVDPV was the causative agent of four paralytic cases (9, 34).”
BackgroundComparative study of five methods for intratypic differentiation of polioviruses
van der Avoort, H. G., Hull, B. P., Hovi, T., Pallansch, M. A., Kew, O. M., Crainic, R., Wood, D. J., Mulders, M. N., & van Loon, A. M. (1995) · Journal of Clinical Microbiology · doi:10.1128/jcm.33.10.2562-2566.1995 · Cited by 122 · see citing works
Self-citationHovi, T., Stenvik, M., Partanen, H., & KANGAS, A. (2001) · Epidemiology and Infection · doi:10.1017/s0950268801005787 · Cited by 113 · see citing works
Self-citationIntertypic genomic rearrangements of poliovirus strains in vaccinees
Cammack, N. C., Phillips, A., Dunn, G., Patel, V., & Minor, P. D. (1988) · Virology · doi:10.1016/0042-6822(88)90113-4 · Cited by 111 · see citing works
Intertypic genomic rearrangements of poliovirus strains in vaccinees
CAMMACK, N., PHILLIPS, A., DUNN, G., PATEL, V, & MINOR, P. (1988) · Virology · doi:10.1016/s0042-6822(88)90113-4 · Cited by 111 · see citing works
Georgescu, M., Delpeyroux, F., Tardy-Panit, M., Balanant, J., Combiescu, M., Aubert-Combiescu, A., Guillot, S., & Crainic, R. (1994) · Journal of Virology · doi:10.1128/jvi.68.12.8089-8101.1994 · Cited by 109 · see citing works
Shulman, L. M., Manor, Y., Handsher, R., Delpeyroux, F., McDonough, M., Halmut, T., Silberstein, I., Alfandari, J., Quay, J., Fisher, T., et al. (2000) · Journal of Clinical Microbiology · doi:10.1128/jcm.38.10.3729-3734.2000 · Cited by 109 · see citing works
Pipkin, P. A., Wood, D. J., Racaniello, V. R., & Minor, P. D. (1993) · Journal of Virological Methods · doi:10.1016/0166-0934(93)90022-j · Cited by 105 · see citing works
Long-term circulation of vaccine-derived poliovirus that causes paralytic disease
Cherkasova, E. A., Korotkova, E. A., Yakovenko, M. L., Ivanova, O. E., Eremeeva, T. P., Chumakov, K. M., & Agol, V. I. (2002) · Journal of Virology · doi:10.1128/jvi.76.13.6791-6799.2002 · Cited by 103 · see citing works
Cherkasova, E., Laassri, M., Chizhikov, V., Korotkova, E., Dragunsky, E., Agol, V. I., & Chumakov, K. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1633511100 · Cited by 101 · see citing works
Lipskaya, G. Y., Muzychenko, A. R., Kutitova, O. K., Maslova, S. V., Equestre, M., Drozdov, S. G., Bercoff, R. P., & Agol, V. I. (1991) · Journal of Medical Virology · doi:10.1002/jmv.1890350415 · Cited by 97 · see citing works
Blomqvist, S., Bruu, A., Stenvik, M., & Hovi, T. (2003) · Journal of General Virology · doi:10.1099/vir.0.18708-0 · Cited by 94 · see citing works
Self-citationMartín, J. E.-S., Samoilovich, E., Dunn, G., Lackenby, A., Fel'dman, E. V., Heath, A., Svirchevskaya, E., Cooper, G., Yermalovich, M. A., & Minor, P. D. (2002) · Journal of Virology · doi:10.1128/jvi.76.21.10921-10928.2002 · Cited by 87 · see citing works
Nucleotide variation in Sabin type 2 poliovirus from an immunodeficient patient with poliomyelitis
Buttinelli, G., Donati, V., Fiore, S., Marturano, J., Plebani, A., Balestri, P., Soresina, A. R., Vivarelli, R., Delpeyroux, F., Martin, J., et al. (2003) · Journal of General Virology · doi:10.1099/vir.0.18974-0 · Cited by 73 · see citing works
Prolonged Detection of Indigenous Wild Polioviruses in Sewage from Communities in Egypt
El Bassioni, L. (2003) · American Journal of Epidemiology · doi:10.1093/aje/kwg202 · Cited by 70 · see citing works
Ranta, J., Hovi, T., & Arjas, E. (2001) · Risk Analysis · doi:10.1111/0272-4332.t01-1-216174 · Cited by 67 · see citing works
Self-citationTripartite genome organization of a natural type 2 vaccine/nonvaccine recombinant poliovirus
Georgescu, M., Delpeyroux, F., & Crainic, R. (1995) · Journal of General Virology · doi:10.1099/0022-1317-76-9-2343 · Cited by 64 · see citing works
Böttiger, M., & Herrström, E. (1992) · Scandinavian Journal of Infectious Diseases · doi:10.3109/00365549209052605 · Cited by 49 · see citing works
Hidalgo, S., Erro, M. G., Cisterna, D., & Freire, M. C. (2003) · Pediatric Infectious Disease Journal · doi:10.1097/01.inf.0000069792.60744.5b · Cited by 44 · see citing works
Circulation of a Type 2 Vaccine-Derived Poliovirus--Egypt, 1982-1993
(2001) · JAMA · doi:10.1001/jama.285.9.1148 · Cited by 34 · see citing works
Piirainen, L., Stenvik, M., Roivainen, M., Eskola, J., Beuvery, E. C., & Hovi, T. (1999) · Vaccine · doi:10.1016/s0264-410x(98)00325-9 · Cited by 19 · see citing works
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VACCINE-DERIVED POLIOVIRUSES AND THE ENDGAME STRATEGY FOR GLOBAL POLIO ERADICATION
Kew, O. M., Sutter, R. W., de Gourville, E. M., Dowdle, W. R., & Pallansch, M. A. (2005) · Annual Review of Microbiology · doi:10.1146/annurev.micro.58.030603.123625 · Cited by 703 · see citing works
Role of environmental poliovirus surveillance in global polio eradication and beyond
HOVI, T., SHULMAN, L. M., VAN DER AVOORT, H., DESHPANDE, J., ROIVAINEN, M., & DE GOURVILLE, E. M. (2012) · Epidemiology and Infection · doi:10.1017/s095026881000316x · Cited by 318 · see citing works
Self-citationCombelas, N., Holmblat, B., Joffret, M.-L., Colbère-Garapin, F., & Delpeyroux, F. (2011) · Viruses · doi:10.3390/v3081460 · Cited by 135 · see citing works
Reemergence of recombinant vaccine–derived poliovirus outbreak in Madagascar.
Rakoto‐Andrianarivelo, M., Gumede, N., Jegouic, S., Balanant, J., Andriamamonjy, S. N., Rabemanantsoa, S., Birmingham, M., Randriamanalina, B., Nkolomoni, L., Venter, M., et al. (2008) · The Journal of Infectious Diseases · doi:10.1086/587694 · Cited by 100 · see citing works
Mechanisms of genetic variation in polioviruses
Savolainen‐Kopra, C., & Blomqvist, S. (2010) · Reviews in Medical Virology · doi:10.1002/rmv.663 · Cited by 67 · see citing works
Self-citationCherkasova, E. A., Yakovenko, M. L., Rezapkin, G. V., Korotkova, E. A., Ivanova, O. E., Eremeeva, T. P., Krasnoproshina, L. I., Romanenkova, N. I., Rozaeva, N. R., Sirota, L., et al. (2005) · Journal of Virology · doi:10.1128/jvi.79.2.1062-1070.2005 · Cited by 55 · see citing works
- Authors
- Blomqvist, S., Savolainen, C., Laine, P., Hirttiö, P., Lamminsalo, E., Penttilä, E., Jöks, S., Roivainen, M., & Hovi, T.
- Affiliations
- Department of Microbiology, Enterovirus Laboratory, National Public Health Institute (KTL), 00300 Helsinki, Finland
- Central Laboratory of Virology, Health Protection Inspectorate, 11315 Tallinn, Estonia
- Corresponding author
- Blomqvist, Soile
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2004-05
- Volume
- 78
- Issue
- 9
- Pages
- 4876-4883
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC387693
- OpenAlex
- W2121087154
- Cited by
- 104
- References
- 39
- Citations by year
- 2026: 1 · 2025: 1 · 2023: 1 · 2022: 1 · 2020: 2 · 2019: 2 · 2018: 2 · 2017: 1 · 2016: 4 · 2015: 4 · 2014: 11 · 2013: 11 · 2012: 5
- FWCI
- 6.32
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Journal of Virology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- Topics
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Viral Infections and Immunology Research
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- circulating vaccine-derived poliovirus, wastewater, VP1 phylogeny, paralytic disease, oral polio vaccine, Estonia
- MeSH terms
- Amino Acid Sequence, Antibodies, Viral, Antigens, Viral, Child, Child, Preschool, Estonia, Humans, Infant, Molecular Sequence Data, Neutralization Tests, Poliovirus Vaccine, Oral, Serotyping, Sewage, Vaccination, Genome, Viral, Sequence Analysis, DNA, Poliovirus, Evolution, Molecular, Amino Acid Substitution
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