The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Amplification of TruSeq ancient DNA libraries with AccuPrime Pfx: consequences on nucleotide misincorporation and methylation patterns
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
PCR amplification can significantly alter library composition because DNA polymerases show preferences for templates of particular sizes and/or base composition and differ in proofreading capabilities for bypassing post-mortem DNA damage.
“PCR, however, does not simply restore sufficient amounts of material for downstream manipulation; it can also significantly alter the library composition as DNA polymerases show various preferences for templates of particular sizes and/or base composition 150 , as well as differing in 'proofreading' capabilities for bypassing post-mortem DNA damage 48,151 .”
From Ancient DNA analysis (2021) · cites this paper as [151]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The complete genome sequence of a Neanderthal from the Altai Mountains
Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. F., & Orlando, L. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt193 · Cited by 1,669
Self-citationDabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314445110 · Cited by 1,443
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature · doi:10.1038/nature12736 · Cited by 963
Self-citationAncient human genome sequence of an extinct Palaeo-Eskimo
Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature · doi:10.1038/nature08835 · Cited by 849
Self-citationGenome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
Wade, C. M., Giulotto, E., Sigurdsson, S., Zoli, M., Gnerre, S., Imsland, F., Lear, T. L., Adelson, D. L., Bailey, E., Bellone, R. R., et al. (2009) · Science · doi:10.1126/science.1178158 · Cited by 822
A mitochondrial genome sequence of a hominin from Sima de los Huesos
Meyer, M., Fu, Q., Aximu-Petri, A., Glocke, I., Nickel, B., Arsuaga, J.-L., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., et al. (2014) · Nature · doi:10.1038/nature12788 · Cited by 534
Improving ancient DNA read mapping against modern reference genomes
Schubert, M., Ginolhac, A., Lindgreen, S., Thompson, J. F., AL-Rasheid, K. A., Willerslev, E., Krogh, A., & Orlando, L. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-178 · Cited by 325
Self-citation
Flagged first, then by citations
Research works printed but not linked: 31
- 10.2144/000114176 · DOI
- 10.1073/pnas.0704665104 · DOI · Paper page
- 10.1093/nar/gkp1163 · DOI · Paper page
- 10.1371/journal.pone.0066948 · DOI
- 10.2144/000113809 · DOI · Paper page
- 10.1098/rstb.2013.0387 · DOI
- 10.1016/j.crvi.2009.12.013 · DOI
- 10.1016/j.jhevol.2014.06.015 · DOI
- 10.1038/nprot.2013.038 · DOI · Paper page
- 10.1126/science.1250368 · DOI · Paper page
- 10.1093/nar/gkt267 · DOI
- 10.1093/nar/24.7.1304 · DOI · Paper page
- 10.1038/nature08976 · DOI
- 10.1074/jbc.271.30.17692 · DOI
- 10.1186/1756-0500-5-337 · DOI
- 10.1101/pdb.prot5448 · DOI
- 10.1101/gr.122747.111 · DOI
- 10.1038/nature12323 · DOI · Paper page
- 10.1101/gr.163592.113 · DOI · Paper page
- 10.1038/nrg3772 · DOI
- 10.1126/science.1123360 · DOI
- 10.1038/nature11725 · DOI
- 10.1093/molbev/msl047 · DOI
- 10.1038/nprot.2014.063 · DOI · Paper page
- 10.1126/science.1238286 · DOI · Paper page
- 10.1371/journal.pone.0078575 · DOI · Paper page
- 10.1126/science.1236573 · DOI · Paper page
- 10.1038/srep05559 · DOI · Paper page
- 10.1371/journal.pone.0089676 · DOI
- 10.1371/journal.pone.0055950 · DOI
- 10.1016/0378-1119(94)90713-7 · DOI
Cited by
Sorted by citations
Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Self-citation
Metadata
- Authors
- Seguin-Orlando, A., Hoover, C. A., Vasiliev, S. K., Ovodov, N. D., Shapiro, B., Cooper, A., Rubin, E. M., Willerslev, E., & Orlando, L.
- Affiliations
- Kobenhavns UniversitetGeoGenetics, Copenhagen, Denmark
- DOE Joint Genome InstituteLawrence Berkeley National Laboratory, Walnut Creek, CA, USA
- Institute of Archaeology and EthnographyRussian Academy of Sciences, Novosibirsk, Russia
- Laboratory of Archaeology and Paleogeography of Central Siberia, Institute of Archaeology and Ethnography, Russian Academy of Sciences, Novosibirsk, Russia
- Department of Ecology and Evolutionary Biology University of California, Santa Cruz, CA, USA
- Australian Centre for Ancient DNA School of Earth and Environmental Sciences, The University of Adelaide, South Australia, Australia
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark
- Venue
- STAR: Science & Technology of Archaeological Research
- Publisher
- Informa UK Limited
- Published
- 2015-03-31
- Volume
- 1
- Issue
- 1
- Pages
- 1-9
- ISSN
- 2054-8923
- Cited by
- 15
- References
- 9
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
