Cited by 1,121Gut microbiota and healthRuminant Nutrition and Digestive PhysiologyAnimal Nutrition and Physiology

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Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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Dowd, Scot E, Callaway, Todd R, Wolcott, Randall D, Sun, Yan, McKeehan, Trevor, Hagevoort, Robert G, Edrington, Thomas S·2008·BMC Microbiology

DOI 10.1186/1471-2180-8-125PMC PMC2515157

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Abstract

BACKGROUND: The microbiota of an animal's intestinal tract plays important roles in the animal's overall health, productivity and well-being. There is still a scarcity of information on the microbial diversity in the gut of livestock species such as cattle. The primary reason for this lack of data relates to the expense of methods needed to generate such data. Here we have utilized a bacterial tag-encoded FLX 16s rDNA amplicon pyrosequencing (bTEFAP) approach that is able to perform diversity analyses of gastrointestinal populations. bTEFAP is relatively inexpensive in terms of both time and labor due to the implementation of a novel tag priming method and an efficient bioinformatics pipeline. We have evaluated the microbiome from the feces of 20 commercial, lactating dairy cows. RESULTS: Ubiquitous bacteria detected from the cattle feces included Clostridium, Bacteroides, Porpyhyromonas, Ruminococcus, Alistipes, Lachnospiraceae, Prevotella, Lachnospira, Enterococcus, Oscillospira, Cytophage, Anaerotruncus, and Acidaminococcus spp. Foodborne pathogenic bacteria were detected in several of the cattle, a total of 4 cows were found to be positive for Salmonella spp (tentative enterica) and 6 cows were positive for Campylobacter spp. (tentative lanienae). CONCLUSION: Using bTEFAP we have examined the microbiota in the feces of cattle. As these methods continue to mature we will better understand the ecology of the major populations of bacteria the lower intestinal tract. This in turn will allow for a better understanding of ways in which the intestinal microbiome contributes to animal health, productivity and wellbeing.

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Impact of dietary fiber/starch ratio in shaping caecal microbiota in rabbits
Zhu, Y., Wang, C., & Li, F. (2015) · Canadian Journal of Microbiology · doi:10.1139/cjm-2015-0201 · Cited by 70
“The forward primer (LinkerA-tag-530F) was 5=-CCATCTCATCCCTGCGTGTCTCCGACTCAGXXXXXXX GTGCCAGCMGCNGCGG-3=, and the reverse primer (LinkerB1100R) was 5=-CCTATCCCCTGTGTGCCTTGGCAGTCTCAGGG GTTNCGNTCGTTG-3= (Dowd et al. 2008).”
Background
Soil prokaryotic communities in Chernobyl waste disposal trench T22 are modulated by organic matter and radionuclide contamination
Theodorakopoulos, N., Février, L., Barakat, M., Ortet, P., Christen, R., Piette, L., Levchuk, S., Beaugelin-Seiller, K., Sergeant, C., Berthomieu, C., et al. (2017) · FEMS Microbiology Ecology · doi:10.1093/femsec/fix079 · Cited by 71
“For the pyrosequencing analyses, amplicons from the V4 region of the 16S rRNA geneswere generated by PCR using the universal primer set 530f (5′-GTGCCAGCMGCNGCGG-3′; Dowd et al. 2008) and 802r (5′-TACNVGGGTATCTAATCC-3′; Claesson et al. 2009).”
Method
Sex differences in response to a high fat, high sucrose diet in both the gut microbiome and hypothalamic astrocytes and microglia
Daly, C. M., Saxena, J., Singh, J., Bullard, M. R., Bondy, E. O., Saxena, A., Buffalino, R. E., Melville, M. F., & Freeman, L. R. (2022) · Nutritional Neuroscience · doi:10.1080/1028415x.2020.1752996 · Cited by 66
High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation
Messer, L. F., Mahaffey, C., Robinson, C. M., Jeffries, T. C., Baker, K. G., Isaksson, J. B., Ostrowski, M. D., Doblin, M. A., Brown, M. V., & Seymour, J. R. (2015) · The ISME Journal · doi:10.1038/ismej.2015.205 · Cited by 70
“…Molecular Research LP, Shallowater, TX, USA) following an additional 10 PCR cycles with custom barcoded nifH1 and nifH2 The ISME Journal The ISME Journal primers under the same PCR reaction conditions (Dowd et al., 2008; Farnelid et al., 2011, 2013; Messer et al., 2015; Supplementary Information).”
Method
Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice
Rogers, G. B., Kozlowska, J., Keeble, J. E., Metcalfe, K., Fao, M., Dowd, S. E., Mason, A. J., McGuckin, M. A., & Bruce, K. D. (2014) · Scientific Reports · doi:10.1038/srep05437 · Cited by 75
The Effect of Silver Nanoparticles on Seasonal Change in Arctic Tundra Bacterial and Fungal Assemblages
Kumar, N., Palmer, G. R., Shah, V., & Walker, V. K. (2014) · PLoS ONE · doi:10.1371/journal.pone.0099953 · Cited by 70
“performed as described [33], [34], [35] using the bacterium-biased primers, Gray28F (59-TTTGATCNTGGCTCAG) and Gray519r (59-GTNTTACNGCGGCKGCTG) and the fungus-biased primers, SSUFungiF (59-TGGAGGGCAAGTCTGGTG) and SSUFungiR (59-TCGGCATAGTTTATGGTTAAG).”
Method
Effects of NaCl concentration on anode microbes in microbial fuel cells
Miyahara, M., Kouzuma, A., & Watanabe, K. (2015) · AMB Express · doi:10.1186/s13568-015-0123-6 · Cited by 70
Colonic aberrant crypt formation accompanies an increase of opportunistic pathogenic bacteria in C57BL/6 mice fed a high-fat diet
Zeng, H., Ishaq, S. L., Liu, Z., & Bukowski, M. R. (2017) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2017.11.001 · Cited by 70
Effect of live yeast Saccharomyces cerevisiae supplementation on the performance and cecum microbial profile of suckling piglets
Kiros, T. G. G., Luise, D., Derakhshani, H., Petri, R. M., Trevisi, P., d'Inca, R., Auclair, E., & Kessel, A. G. V. (2019) · PLoS ONE · doi:10.1371/journal.pone.0219557 · Cited by 73
Changes in the intestinal bacterial community, short-chain fatty acid profile, and intestinal development of preweaned Holstein calves. 2. Effects of gastrointestinal site and age
Castro, J. J., Gomez, A. M., White, B. A., Loften, J. R., & Drackley, J. K. (2016) · Journal of Dairy Science · doi:10.3168/jds.2016-11007 · Cited by 69
Intestinal Microbial Diversity and Perioperative Complications
Ralls, M. W., Miyasaka, E. A., & Teitelbaum, D. H. (2013) · Journal of Parenteral and Enteral Nutrition · doi:10.1177/0148607113486482 · Cited by 72
Effect of replacing solvent-extracted canola meal with high-oil traditional canola, high-oleic acid canola, or high-erucic acid rapeseed meals on rumen fermentation, digestibility, milk production, and milk fatty acid composition in lactating dairy cows
Hristov, A. N., Domitrovich, C., Wachter, A., Cassidy, T. W., Lee, C., Shingfield, K. J., Kairenius, P. K., Davis, J. B., & Brown, J. (2011) · Journal of Dairy Science · doi:10.3168/jds.2011-4283 · Cited by 69
“This is not surprising, as nitrous oxide emission is insignificant on the barn floor or from simulated storage systems (Adviento-Borbe et al., 2010; Arriaga et al., 2010) because of the lack of nitrifying and denitrifying microorganisms in cattle feces (Dowd et al., 2008).”
Background
Comparison of bacterial diversity in full scale anammox bioreactors operated under different conditions
González‐Martínez, A., Osorio, F., Morillo, J. A., Rodríguez–Sánchez, A., González-López, J., Abbas, B. A., & van Loosdrecht, M. C. M. (2015) · Biotechnology Progress · doi:10.1002/btpr.2151 · Cited by 69
“Tag-pyrosequencing was conducted by Research and Testing Laboratory (Lubbock, USA) on a GS FLX1 platform (Roche, Branford, USA) targeting the V3-V6 hypervariable regions of bacterial 16S rRNA genes using the primer pair 530F (50-GTGCCAGCMGCNGCGG-30) - 1100R (50-GGGTTNCGNTCGTTR-30).(11)”
Method
Comparison of Bacterial Communities in Sands and Water at Beaches with Bacterial Water Quality Violations
Halliday, E., McLellan, S. L., Amaral‐Zettler, L., Sogin, M. L., & Gast, R. J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0090815 · Cited by 73
“Sequence tags from the indicator Enterococcus were recovered on days that had exceeded water quality standards, but the rarity of Enterococcus in this and other pyrosequencing datasets [27,44] illustrates how the concentrations of indicators that cause concern from a monitoring perspective are relatively rare within t…”
Background
Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms
Lawes, J. C., Neilan, B. A., Brown, M. V., Clark, G. F., & Johnston, E. L. (2016) · Biofouling · doi:10.1080/08927014.2015.1126581 · Cited by 72
“Resultant sequences were then de-noised and chimeras removed (see Dowd et al. 2008, 2008; Edgar 2010).”
BackgroundMethod
Thermally enhanced in situ bioremediation of groundwater contaminated with chlorinated solvents – A field test
Němeček, J., Steinová, J., Špánek, R., Pluhař, T., Pokorný, P., Najmanová, P., Knytl, V., & Černík, M. (2017) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2017.12.047 · Cited by 68
Zooming Into the Microbiota of Home-Made and Industrial Kefir Produced in Greece Using Classical Microbiological and Amplicon-Based Metagenomics Analyses
Κάζου, Μ., Grafakou, A., Tsakalidou, E., & Georgalaki, M. D. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.621069 · Cited by 68
Protons accumulation during anodic phase turned to advantage for oxygen reduction during cathodic phase in reversible bioelectrodes
Blanchet, E., Pécastaings, S., Erable, B., Roques, C. G., & Bergel, A. (2014) · Bioresource Technology · doi:10.1016/j.biortech.2014.09.076 · Cited by 68
“Microbial diversity screening and data processing were carried out at Research and Testing Laboratory (Lubbock TX) using meth-ods described previously (Dowd et al., 2008).”
Method
Eutrophication has no short-term effect on the Cymbastela stipitata holobiont
Luter, H. M., Gibb, K. S., & Webster, N. S. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00216 · Cited by 68
Comparative bioaugmentation with a consortium and a single strain in a phenanthrene-contaminated soil: Impact on the bacterial community and biodegradation
Festa, S., Coppotelli, B. M., & Morelli, I. S. (2015) · Applied Soil Ecology · doi:10.1016/j.apsoil.2015.08.025 · Cited by 68
Colonization of cucumber seeds by bacteria during germination
Ofek, M., Hadar, Y., & Minz, D. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02551.x · Cited by 69
The transition from freshwater to marine iron‐oxidizing bacterial lineages along a salinity gradient on the S heepscot R iver, M aine, USA
McBeth, J., Fleming, E. J., & Emerson, D. (2013) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12033 · Cited by 67
“Tagged pyrosequencing samples were analysed at Research and Testing Laboratory (Lubbock, TX), as described in (Dowd et al., 2008).”
Method
Diversity, Distribution and Hydrocarbon Biodegradation Capabilities of Microbial Communities in Oil-Contaminated Cyanobacterial Mats from a Constructed Wetland
Abed, R. M. M., Al-Kharusi, S., Prigent, S., & Headley, T. R. (2014) · PLoS ONE · doi:10.1371/journal.pone.0114570 · Cited by 66
“Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) was performed as described before [25, 26] using the GS FLX titanium sequencing kit XLR70.”
Method
Segregation of the Anodic Microbial Communities in a Microbial Fuel Cell Cascade
Hodgson, D. M., Smith, A., Dahale, S., Stratford, J. P., Li, J. V., Grüning, A., Bushell, M. E., Marchesi, J. R., & Avignone-Rossa, C. A. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00699 · Cited by 67
A High-Throughput DNA-Sequencing Approach for Determining Sources of Fecal Bacteria in a Lake Superior Estuary
Brown, C. M., Staley, C. M., Wang, P., Dalzell, B. J., Chun, C. L., & Sadowsky, M. J. (2017) · Environmental Science & Technology · doi:10.1021/acs.est.7b01353 · Cited by 67
Potential role of rumen microbiota in altering average daily gain and feed efficiency in meat goats fed simple and mixed pastures using bacterial tag-encoded FLX amplicon pyrosequencing1
Min, B. R., Gurung, N. K., Shange, R. S., & Solaiman, S. G. (2019) · Journal of Animal Science · doi:10.1093/jas/skz193 · Cited by 67
The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica
Uribe‐Lorío, L., Brenes‐Guillén, L., Hernández‐Ascencio, W., Mora‐Amador, R., González, G., Ramírez-Umaña, C., Dı́ez, B., & Pedrós‐Alió, C. (2019) · MicrobiologyOpen · doi:10.1002/mbo3.893 · Cited by 67
“Dowd et al. (2008) described the subsequent PCR and sequencing.”
Culture-Independent Characterization of Bacteria and Fungi in a Poultry Bioaerosol Using Pyrosequencing: A New Approach
Nonnenmann, M. W., Bextine, B. R., Dowd, S. E., Gilmore, K., & Levin, J. (2010) · Journal of Occupational and Environmental Hygiene · doi:10.1080/15459624.2010.526893 · Cited by 66
When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition
Blanchet, M., Pringault, O., Panagiotopoulos, C., Lefèvre, D., Charrìère, B., Ghiglione, J., Fernández, C., Aparicio, F. L., Marrasé, C., Catala, P., et al. (2016) · Aquatic Sciences · doi:10.1007/s00027-016-0477-0 · Cited by 72
“The V1-V3 hypervariable regions of bacterial 16S rRNA genes were amplified using primers 27F-519R, as recommended by Dowd et al. (2008).”
Method
Consumption of florfenicol-medicated feed alters the composition of the channel catfish intestinal microbiota including enriching the relative abundance of opportunistic pathogens
Wang, E., Yuan, Z., Wang, K., Gao, D., Liu, Z., & Liles, M. R. (2018) · Aquaculture · doi:10.1016/j.aquaculture.2018.11.019 · Cited by 69
Bibliometric analysis of publications on Campylobacter: (2000–2015)
Sweileh, W. M., Al‐Jabi, S. W., Sawalha, A. F., AbuTaha, A. S., & Zyoud, S. H. (2016) · Journal of Health Population and Nutrition · doi:10.1186/s41043-016-0076-7 · Cited by 65
“However, the title/ abstract search will yield many false positive results in which the main focus is not on Campylobacter per se [43] [44] [45] [46] [47] [48] [49] [50] [51] .”
Background
Bacterial communities in tetrachloroethene-polluted groundwaters: A case study
Kotik, M., Davidova, A. N., Voříšková, J., & Baldrián, P. (2013) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2013.02.082 · Cited by 64
Photoperiod modulates gut bacteria composition in male Siberian hamsters (Phodopus sungorus)
Bailey, M. T., Walton, J. C., Dowd, S. E., Weil, Z. M., & Nelson, R. J. (2010) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2009.12.010 · Cited by 64
“…ends and tags were removed and sequences were depleted of any non-bacteria ribosome sequences and chimeras using custom software described previously (Dowd et al., 2008) and the Black Box Chimera Check software B2C2 (described and freely available at http://www.researchandtesting.com/B2C2.html).”
Influential
Anaerobic co-digestion of commercial laundry wastewater and domestic sewage in a pilot-scale EGSB reactor: The influence of surfactant concentration on microbial diversity
Centurion, V. B., de Moura, A. G. L., Delforno, T. P., Okada, D. Y., dos Santos, V. P., Varesche, M. B. A., & Oliveira, V. M. (2017) · International Biodeterioration & Biodegradation · doi:10.1016/j.ibiod.2017.11.017 · Cited by 64
Use of cassette-electrode microbial fuel cell for wastewater treatment
Miyahara, M., Hashimoto, K., & Watanabe, K. (2012) · Journal of Bioscience and Bioengineering · doi:10.1016/j.jbiosc.2012.09.003 · Cited by 63
Effect of Air Nanobubbles on Oxygen Transfer, Oxygen Uptake and, Diversity of Aerobic Microbial Consortium in Activated Sludge Reactors
Yaparatne, S., Doherty, Z. E., Magdaleno, A. L., Matula, E. E., MacRae, J. D., Garcia‐Segura, S., & Apul, O. G. (2022) · Bioresource Technology · doi:10.1016/j.biortech.2022.127090 · Cited by 63
Conversion of activated-sludge reactors to microbial fuel cells for wastewater treatment coupled to electricity generation
Yoshizawa, T., Miyahara, M., Kouzuma, A., & Watanabe, K. (2014) · Journal of Bioscience and Bioengineering · doi:10.1016/j.jbiosc.2014.04.009 · Cited by 63
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
Holmsgaard, P. N., Norman, A., Hede, S. C., Poulsen, P. H. B., Al‐Soud, W. A., Hansen, L. H., & Sørensen, S. J. (2011) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2011.06.019 · Cited by 63
Analysis of microbial community adaptation in mesophilic hydrogen fermentation from food waste by tagged 16S rRNA gene pyrosequencing
Laothanachareon, T., Kanchanasuta, S., Mhuanthong, W., Phalakornkule, C., Pisutpaisal, N., & Champreda, V. (2014) · Journal of Environmental Management · doi:10.1016/j.jenvman.2014.05.019 · Cited by 63
“The tagged amplicon pyrosequencing approach is the current method of choice as it allows for high-throughput quantitative parallel analysis of microbial community structures and functions from different environmental and engineered systems (Dowd et al., 2008).”
Method
Gastrointestinal Bacterial and Methanogenic Archaea Diversity Dynamics Associated with Condensed Tannin-Containing Pine Bark Diet in Goats Using 16S rDNA Amplicon Pyrosequencing
Min, B. R., Solaiman, S. G., Shange, R. S., & Eun, J.-S. (2014) · International Journal of Microbiology · doi:10.1155/2014/141909 · Cited by 65
“The bTEFAP and data processingwere performed as described previously [10].”
Method
Diversity of Bacterial Communities of Fitness Center Surfaces in a U.S. Metropolitan Area
Mukherjee, N., Dowd, S. E., Wise, A., Kedia, S., Vohra, V., & Banerjee, P. (2014) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph111212544 · Cited by 64
“[33,34] and that has been utilized to describe a wide range of environmental- and health-related microbiomes [33–35].”
Background
Ecological Succession of Bacterial Communities during Conventionalization of Germ-Free Mice
Gillilland, M. G., Erb‐Downward, J. R., Bassis, C. M., Shen, M. C., Toews, G. B., Young, V. B., & Huffnagle, G. B. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.05239-11 · Cited by 68
Nanosilver-Mediated Change in Human Intestinal Microbiota
McDonald, P. D. J. A. (2014) · Journal of Nanomedicine & Nanotechnology · doi:10.4172/2157-7439.1000235 · Cited by 64
Influent wastewater microbiota and temperature influence anaerobic membrane bioreactor microbial community
Seib, M. D., Berg, K. J., & Zitomer, D. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.05.098 · Cited by 63
Microbiota profile in new-onset pediatric Crohn’s disease: data from a non-Western population
Mouzan, M. I. E., Winter, H. S., Assiri, A., Korolev, K. S., Sarkhy, A. A. A., Dowd, S. E., Mofarreh, M. A. A., & Menon, R. (2018) · Gut Pathogens · doi:10.1186/s13099-018-0276-3 · Cited by 63
Combined abiotic and biotic in-situ reduction of hexavalent chromium in groundwater using nZVI and whey: A remedial pilot test
Němeček, J., Pokorný, P., Lacinová, L., Černík, M., Masopustová, Z., Lhotský, O., Filipová, A., & Cajthaml, T. (2015) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2015.07.056 · Cited by 68
“Dynazyme II DNA Polymerase (Finnzymes) with the 16S eubacterial primers eub530f (5'GTGCCAGCMGCNGCGG) and modified eub1100r (5'-GGGTTNCGNTCGTTGCG) [23] were used for amplifying the V4-V6 region of 16S rRNA genes.”
Method
Microbial symbionts of honeybees: a promising tool to improve honeybee health
Crotti, E., Sansonno, L., Prosdocimi, E. M., Vacchini, V., Hamdi, C., Cherif, A., Gonella, E., Marzorati, M., & Balloi, A. (2013) · New Biotechnology · doi:10.1016/j.nbt.2013.05.004 · Cited by 62
Biological Phosphorus Removal During High-Rate, Low-Temperature, Anaerobic Digestion of Wastewater
Keating, C., Chin, J. P., Hughes, D., Manesiotis, P., Cysneiros, D., Mahony, T., Smith, C. J., McGrath, J. W., & O’Flaherty, V. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00226 · Cited by 62
Influence of Season and Feedlot Location on Prevalence and Virulence Factors of Seven Serogroups of Escherichia coli in Feces of Western-Canadian Slaughter Cattle
Stanford, K., Johnson, R. P., Alexander, T. W., McAllister, T. A., & Reuter, T. (2016) · PLoS ONE · doi:10.1371/journal.pone.0159866 · Cited by 62
Microbial community analysis of fouled reverse osmosis membranes used in water recycling
Ayache, C., Manes, C.-L. D. O., Pidou, M., Croué, J.-P., & Gernjak, W. (2013) · Water Research · doi:10.1016/j.watres.2013.03.006 · Cited by 61
Evaluation of composition and individual variability of rumen microbiota in yaks by 16S rRNA high-throughput sequencing technology
Guo, W., Li, Y., Wang, L., Wang, J., Xu, Q., Yan, T., & Bai, X. (2015) · Anaerobe · doi:10.1016/j.anaerobe.2015.04.010 · Cited by 63

Authors: Dowd, S. E., Callaway, T. R., Wolcott, R. D., Sun, Y., McKeehan, T., Hagevoort, R. G., & Edrington, T. S.
Affiliations: Agricultural Research Service (US)
Corresponding author: Dowd, Scot E
ORCID: Dowd, Scot E
Callaway, Todd R
Edrington, Thomas S
Venue: BMC Microbiology
Publisher: Springer Science and Business Media LLC
Published: 2008
Volume: 8
Issue: 1
Pages: 125
ISSN: 1471-2180 (ISSN-L)
DOI: 10.1186/1471-2180-8-125
PMC: PMC2515157
OpenAlex: W2105807803
Cited by: 1,121
References: 80
Citations by year: 2026: 16 · 2025: 23 · 2024: 32 · 2023: 32 · 2022: 45 · 2021: 65 · 2020: 52 · 2019: 60 · 2018: 68 · 2017: 105 · 2016: 116 · 2015: 121 · 2014: 129 · 2013: 99 · 2012: 75
FWCI: 11.37
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by
Locations: BMC Microbiology (publishedVersion, cc-by)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders: U.S. Department of Agriculture
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
Keywords: fecal microbiota, bacterial diversity, dairy cattle, Clostridium, Bacteroides, Ruminococcus, Lachnospiraceae, foodborne pathogens, Salmonella, Campylobacter, gut microbiota
MeSH terms: Animals, Bacteria, Cattle, DNA, Bacterial, DNA, Ribosomal, Feces, Female, RNA, Ribosomal, 16S, Polymerase Chain Reaction, Sequence Analysis, DNA, Gastrointestinal Tract, Biodiversity

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Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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