Cited by 1,121Gut microbiota and healthRuminant Nutrition and Digestive PhysiologyAnimal Nutrition and Physiology

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Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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Dowd, Scot E, Callaway, Todd R, Wolcott, Randall D, Sun, Yan, McKeehan, Trevor, Hagevoort, Robert G, Edrington, Thomas S·2008·BMC Microbiology

DOI 10.1186/1471-2180-8-125PMC PMC2515157

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Abstract

BACKGROUND: The microbiota of an animal's intestinal tract plays important roles in the animal's overall health, productivity and well-being. There is still a scarcity of information on the microbial diversity in the gut of livestock species such as cattle. The primary reason for this lack of data relates to the expense of methods needed to generate such data. Here we have utilized a bacterial tag-encoded FLX 16s rDNA amplicon pyrosequencing (bTEFAP) approach that is able to perform diversity analyses of gastrointestinal populations. bTEFAP is relatively inexpensive in terms of both time and labor due to the implementation of a novel tag priming method and an efficient bioinformatics pipeline. We have evaluated the microbiome from the feces of 20 commercial, lactating dairy cows. RESULTS: Ubiquitous bacteria detected from the cattle feces included Clostridium, Bacteroides, Porpyhyromonas, Ruminococcus, Alistipes, Lachnospiraceae, Prevotella, Lachnospira, Enterococcus, Oscillospira, Cytophage, Anaerotruncus, and Acidaminococcus spp. Foodborne pathogenic bacteria were detected in several of the cattle, a total of 4 cows were found to be positive for Salmonella spp (tentative enterica) and 6 cows were positive for Campylobacter spp. (tentative lanienae). CONCLUSION: Using bTEFAP we have examined the microbiota in the feces of cattle. As these methods continue to mature we will better understand the ecology of the major populations of bacteria the lower intestinal tract. This in turn will allow for a better understanding of ways in which the intestinal microbiome contributes to animal health, productivity and wellbeing.

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Basic local alignment search tool
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Background
Comparison of the Compositions of the Stool Microbiotas of Infants Fed Goat Milk Formula, Cow Milk-Based Formula, or Breast Milk
Tannock, G. W., Lawley, B., Munro, K., Pathmanathan, S. G., Zhou, S. J., Makrides, M., Gibson, R. A., Sullivan, T., Prosser, C. G., Lowry, D. J., et al. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03910-12 · Cited by 233
The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing
Suchodolski, J. S., Dowd, S. E., Westermarck, E., Steiner, J. M., Wolcott, R. D., Spillmann, T., & Harmoinen, J. (2009) · BMC Microbiology · doi:10.1186/1471-2180-9-210 · Cited by 239
“Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) based upon the V4-V5 region of the 16S rRNA gene was performed as described previously [39] at the Research and Testing Laboratory (Lubbock, TX.”
Method
Distinctly altered gut microbiota in the progression of liver disease
Xie, G., Wang, X., Liu, P., Wei, R., Chen, W., Rajani, C., Hernandez, B. Y., Alegado, R., Dong, B., Li, D., et al. (2016) · Oncotarget · doi:10.18632/oncotarget.8466 · Cited by 219
“Reads were clustered into operational taxonomic units (OUTs) were defined with clustering at 3% divergence (97% sequence similarity) [43, 45, 46].”
Method
The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer
Chun, J., Kim, K. Y., Lee, J.-H., & Choi, Y. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-101 · Cited by 225
“munities has been well documented for the Roche/454 Genome Sequencer (GS) 20 machine [5,6] and the GS FLX system [7-9], which produce sequence reads of approximately 100 bp and 250 bp in length, respectively.”
Method
Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis
Petri, R. M., Schwaiger, T., Penner, G. B., Beauchemin, K. A., Forster, R. J., McKinnon, J. J., & McAllister, T. A. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03983-12 · Cited by 218
Bacterial community composition and structure in an Urban River impacted by different pollutant sources
Ibekwe, A. M., Ma, J., & Murinda, S. E. (2016) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2016.05.168 · Cited by 222
“The order Bacteroidales is enriched within the gut microbiota of many mammals (Dowd et al., 2008; Cotta and Forster, 2006; Ishii et al., 2006; Fogarty and Voytek, 2005; Juteau et al., 2005), and specific species within this order have been proposed as fecal indicators (Weary et al., 2008).”
Background
Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing
Thoetkiattikul, H., Mhuantong, W., Laothanachareon, T., Tangphatsornruang, S., Pattarajinda, V., Eurwilaichitr, L., & Champreda, V. (2013) · Current Microbiology · doi:10.1007/s00284-013-0336-3 · Cited by 209
Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria
Farnelid, H., Andersson, A. F., Bertilsson, S., Al‐Soud, W. A., Hansen, L. H., Sørensen, S. J., Steward, G. F., Hagström, Å., & Riemann, L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0019223 · Cited by 220
“For 454 pyrosequencing of samples, adapters and samplespecific tags were added using custom primers (Table S1) in an additional PCR amplification of 10 cycles using the same PCR conditions [14].”
Method
Molecular Characterisation of Gastrointestinal Microbiota of Children With Autism (With and Without Gastrointestinal Dysfunction) and Their Neurotypical Siblings
Gondalia, S. V., Palombo, E. A., Knowles, S. R., Cox, S. B., Meyer, D., & Austin, D. W. (2012) · Autism Research · doi:10.1002/aur.1253 · Cited by 208
Pyrosequencing Reveals the Influence of Organic and Conventional Farming Systems on Bacterial Communities
Li, R., Khafipour, E., Krause, D. O., Entz, M. H., de Kievit, T. R., & Fernando, W. G. D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0051897 · Cited by 207
“In brief, a mixture of Hot Start, HotStar high fidelity Taq polymerases, and Titanium reagents were used to perform a one-step PCR (35 cycles) with primers 28F (GAGTTTGATCMTGGCTCAG) and 519R (GTNTTACNGCGGCKGCTG), which covered the variable regions V1–V3 of the bacterial 16S rRNA genes [31].”
Method
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
Sanders, J. G., Beichman, A. C., Roman, J., Scott, J. J., Emerson, D., McCarthy, J. J., & Girguis, P. R. (2015) · Nature Communications · doi:10.1038/ncomms9285 · Cited by 208
“PCR ampliﬁcation and 454 pyrosequencing of the V1–V3 regions were both performed at Research and Testing Laboratories (Lubbock, TX) using previously published protocols 35 .”
A review of feeding supplementary nitrate to ruminant animals: nitrate toxicity, methane emissions, and production performance
Lee, C., & Beauchemin, K. A. (2014) · Canadian Journal of Animal Science · doi:10.4141/cjas-2014-069 · Cited by 231
Studying Bacterial Multispecies Biofilms: Where to Start?
Røder, H. L., Sørensen, S. J., & Burmølle, M. (2016) · Trends in Microbiology · doi:10.1016/j.tim.2016.02.019 · Cited by 209
“community in the targeted environments [17,18].”
The Effects of a Probiotic Yeast on the Bacterial Diversity and Population Structure in the Rumen of Cattle
Pinloche, E., McEwan, N. R., Marden, J. P., Bayourthe, C., Auclair, E., & Newbold, C. J. (2013) · PLoS ONE · doi:10.1371/journal.pone.0067824 · Cited by 205
“A popular way to handle those large datasets is to cluster the sequences at a defined sequence identity threshold, select a representative sequence of each OTU and then identify the selected sequence using phylogeny [40,41,42].”
Background
Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables
Jackson, C. R., Randolph, K. C., Osborn, S. L., & Tyler, H. L. (2013) · BMC Microbiology · doi:10.1186/1471-2180-13-274 · Cited by 206
“Bacterial tag-encoded FLX amplicon 454 pyrosequencing (bTEFAP) [45] was conducted on the 16S rRNA gene amplicons of each sample, through a dedicated sequencing facility (MR DNA, Shallowater, TX).”
Method
Intensive care unit environmental surfaces are contaminated by multidrug-resistant bacteria in biofilms: combined results of conventional culture, pyrosequencing, scanning electron microscopy, and confocal laser microscopy
Hu, H., Johani, K., Gosbell, I. B., Jacombs, A., Almatroudi, A., Whiteley, G. S., Deva, A. K., Jensen, S. O., & Vickery, K. (2015) · Journal of Hospital Infection · doi:10.1016/j.jhin.2015.05.016 · Cited by 198
“Pyrosequencing was performed using the Titanium platform (Roche, Basel, Switzerland) in a commercial facility (Molecular Research DNA Lab, Shallowater, TX, USA), as previously described.(23) Pyrosequencing data were analysed by QIIME software (Werner Lab, Cortland, NY, USA).”
Method
Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome
Sibley, C. D., Grinwis, M. E., Field, T. R., Eshaghurshan, C. S., Faria, M. M. P., Dowd, S. E., Parkins, M. D., Rabin, H. R., & Surette, M. G. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022702 · Cited by 196
“NET and C# analysis pipeline the resulting BLASTn outputs were compiled and validated using sequence identity methods; data reduction analysis was performed as described previously [74–82].”
Method
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
Mandaković, D., Rojas, C., Maldonado, J. E., Latorre, M., Travisany, D., Delage, E., Bihouée, A., Jean, G., Díaz, F. P., Fernández-Gómez, B., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-23931-0 · Cited by 184
Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer
de Oliveira, M. N. V., Jewell, K. A., Freitas, F. S., Benjamin, L. A., Tótola, M. R., Borges, A. C., Moraes, C. A., & Suen, G. (2013) · Veterinary Microbiology · doi:10.1016/j.vetmic.2013.02.013 · Cited by 184
Gut microbiome composition is associated with temperament during early childhood
Christian, L. M., Galley, J. D., Hade, E. M., Schoppe-Sullivan, S., Kamp Dush, C., & Bailey, M. T. (2015) · Brain, Behavior, and Immunity · doi:10.1016/j.bbi.2014.10.018 · Cited by 191
“Bacterial tag-encoded FLX-Amplicon Pyrosequencing (bTEFAP) was performed as previously described (Dowd et al., 2008a,b).”
Method
Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers
Galley, J. D., Bailey, M. T., Dush, C. M. K., Schoppe‐Sullivan, S. J., & Christian, L. M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0113026 · Cited by 184
“bTEFAP Bacterial tag-encoded FLX-Amplicon Pyrosequencing (bTEFAP) was performed as previously described [21,22].”
Method
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
Shepherd, M. L., Swecker, W. S., Jensen, R. V., & Ponder, M. A. (2011) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2011.02434.x · Cited by 187
“93%) (Dowd et al., 2008).”
BackgroundResultInfluential
Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons
López‐Velasco, G., Welbaum, G. E., Boyer, R. R., Mane, S. P., & Ponder, M. A. (2011) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2011.04969.x · Cited by 176
“2007), intestinal tract (Andersson et al. 2008; Dowd et al. 2008), soils (Roesch et al.”
Background
Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition
Lladó, S., Žifčáková, L., Větrovský, T., Eichlerová, I., & Baldrián, P. (2015) · Biology and Fertility of Soils · doi:10.1007/s00374-015-1072-6 · Cited by 176
“The V4–V6 hypervariable regions of the 16S rRNA gene of each bacterial isolate were amplified using the eubacterial primers eub530F/eub1100aR, modified from Dowd et al. (2008).”
Method
Assessing the Impact of Copper and Zinc Oxide Nanoparticles on Soil: A Field Study
Collins, D., Luxton, T. P., Kumar, N., Shah, S., Walker, V. K., & Shah, V. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042663 · Cited by 174
Evaluation of the bacterial diversity among and within individual venous leg ulcers using bacterial tag-encoded FLX and Titanium amplicon pyrosequencing and metagenomic approaches
Wolcott, R. D., Gontcharova, V., Sun, Y., & Dowd, S. E. (2009) · BMC Microbiology · doi:10.1186/1471-2180-9-226 · Cited by 174
“The current study was undertaken to better characterize the bacterial ecology of VLU using modern next-generation approaches [8-13].”
BackgroundMethod
Black Box Chimera Check (B2C2): a Windows-Based Software for Batch Depletion of Chimeras from Bacterial 16S rRNA Gene Datasets
Gontcharova, V., Youn, E., Wolcott, R. D., Hollister, E. B., Gentry, T. J., & Dowd, S. E. (2010) · The Open Microbiology Journal · doi:10.2174/1874285801004010047 · Cited by 176
“Bacterial tag-encoded FLX Amplicon Pyrosequencing (bTEFAP) is a newly described method for evaluating microbial diversity within complex environments [3-5], based upon the 16S rRNA gene or any other gene.”
Method
Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis
Steelman, S. M., Chowdhary, B. P., Dowd, S. E., Suchodolski, J. S., & Janečka, J. E. (2012) · BMC Veterinary Research · doi:10.1186/1746-6148-8-231 · Cited by 173
“Sequences were depleted of chimeras and assignments to putative species (>97% similarity) were done with BlastN [58] against a manually curated database compiled from NCBI by the Research and Testing Laboratory (Lubbock, TX) [38].”
BackgroundMethodInfluential
Investigation of bacterial diversity in the feces of cattle fed different diets1
Kim, M.-H., Kim, J., Kuehn, L. A., Bono, J. L., Berry, E. D., Kalchayanand, N., Freetly, H. C., Benson, A. K., & Wells, J. E. (2013) · Journal of Animal Science · doi:10.2527/jas.2013-6841 · Cited by 176
Animal-to-animal variation in fecal microbial diversity among beef cattle
Durso, L. M., Harhay, G. P., Smith, T. P. L., Bono, J. L., DeSantis, T. Z., Harhay, D. M., Andersen, G. L., Keen, J. E., Laegreid, W. W., & Clawson, M. L. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00207-10 · Cited by 168
“5% of the total beef sequences but 19% of the dairy pyrosequences (1).”
BackgroundMethodResultInfluential
Phenazine Content in the Cystic Fibrosis Respiratory Tract Negatively Correlates with Lung Function and Microbial Complexity
Hunter, R. C., Klepac‐Ceraj, V., Lorenzi, M. M., Grotzinger, H., Martin, T. R., & Newman, D. K. (2012) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2012-0088oc · Cited by 169
Retracted
Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after the Deepwater Horizon oil spill
Liu, Z., & Liu, J. (2013) · MicrobiologyOpen · doi:10.1002/mbo3.89 · Cited by 166
“Bacterial diversity was studied via the bacterial tagencoded FLX amplicon pyrosequencing (bTEFAP) using eubacterial primers 28F 5′TTTGATCNTGGCTCAG-3′ and 519R 5′-GTNTTACNGCGGCKGCTG-3′ to amplify the 500 bp region of 16S rRNA gene (Dowd et al. 2008; Smith et al. 2010).”
Method
Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response
Oshkin, I. Y., Beck, D. A. C., Lamb, A. E., Tchesnokova, V. L., Benuska, G., McTaggart, T. L., Kalyuzhnaya, M., Dedysh, S. N., Lidstrom, M. E., & Chistoserdova, L. (2014) · The ISME Journal · doi:10.1038/ismej.2014.203 · Cited by 166
“16S rRNA gene amplicon pyrosequencing was carried out as previously described (Dowd et al., 2008).”
Method
Pyrosequencing-based characterization of gastrointestinal bacteria of Atlantic salmon ( Salmo salar L.) within a commercial mariculture system
Zarkasi, K. Z., Abell, G. C. J., Taylor, R. S., Neuman, C., Hatje, E., Tamplin, M. L., Katouli, M., & Bowman, J. P. (2014) · Journal of Applied Microbiology · doi:10.1111/jam.12514 · Cited by 168
“1993) was carried out by Research and Testing Laboratories (Lubbock, Texas) using a Roche 454 FLX instruments with titanium reagents as previously detailed by Dowd et al., (2008). Approximately 3000 raw reads were obtained per sample.”
Method
Atlantic Salmon (Salmo salar L.) Gastrointestinal Microbial Community Dynamics in Relation to Digesta Properties and Diet
Zarkasi, K. Z., Taylor, R. S., Abell, G. C. J., Tamplin, M. L., Glencross, B. D., & Bowman, J. P. (2016) · Microbial Ecology · doi:10.1007/s00248-015-0728-y · Cited by 165
Board-invited review: Rumen microbiology: Leading the way in microbial ecology1,2
Krause, D. O., Nagaraja, T. G., Wright, A.-D. G., & Callaway, T. R. (2013) · Journal of Animal Science · doi:10.2527/jas.2012-5567 · Cited by 162
Community fingerprinting in a sequencing world
van Dorst, J. M., Bissett, A. B., Palmer, A. S., Brown, M. V., Snape, I., Stark, J. S., Raymond, B., McKinlay, J. P., Ji, M., Winsley, T. J., et al. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12308 · Cited by 172
“The DNA was used as a template for amplification of the 16S rDNA gene with the universal primers, 28F and 519R (Dowd et al., 2008).”
Method
A Comparison of Bacterial Composition in Diabetic Ulcers and Contralateral Intact Skin
Gontcharova, V., Youn, E., Sun, Y., Wolcott, R. D., & Dowd, S. E. (2010) · The Open Microbiology Journal · doi:10.2174/1874285801004010008 · Cited by 156
Self-citation
Modulation of the faecal microbiome of healthy adult dogs by inclusion of potato fibre in the diet
Panasevich, M. R., Kerr, K. R., Dilger, R. N., Fahey, G. C., Jr., Guérin‐Deremaux, L., Lynch, G. L., Wils, D., Suchodolski, J. S., Steer, J. M., Dowd, S. E., et al. (2014) · British Journal Of Nutrition · doi:10.1017/s0007114514003274 · Cited by 166
“The physiological relevance of these results was further investigated by conducting post hoc Pearson’s correlation analysis with faecal SCFA data reported previously((14)) and qPCR data.”
Method
Bacterial Succession in the Broiler Gastrointestinal Tract
Ranjitkar, S., Lawley, B., Tannock, G. W., & Engberg, R. M. (2016) · Applied and Environmental Microbiology · doi:10.1128/aem.02549-15 · Cited by 157
“from DNA using a two-step protocol as described previously (30).”
Method
Pyrosequencing of Tagged 16S rRNA Gene Amplicons for Rapid Deciphering of the Microbiomes of Fermented Foods Such as Pearl Millet Slurries
Humblot, C., & Guyot, J. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00451-09 · Cited by 155
“also showed good representation of all samples of cattle feces with 1,732 to 3,224 sequences (4).”
Background
The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics
López‐Mondéjar, R., Voříšková, J., Větrovský, T., & Baldrián, P. (2015) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2015.04.008 · Cited by 153
454‐sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
Lekberg, Y., Schnoor, T. K., Kjøller, R., Gibbons, S. M., Hansen, L. H., Al‐Soud, W. A., Sørensen, S. J., & Rosendahl, S. (2011) · Journal of Ecology · doi:10.1111/j.1365-2745.2011.01894.x · Cited by 160
“Additionally, three different 10-base tags were included between linker A and the glo454 primer (Dowd et al. 2008), allowing all 48 samples to be distributed among sixteen 454-sectors with three samples in each sector.”
Background
The alligator gut microbiome and implications for archosaur symbioses
Keenan, S. W., Engel, A. S., & Elsey, R. M. (2013) · Scientific Reports · doi:10.1038/srep02877 · Cited by 153
Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing
Zhou, Z., Meng, H., Liu, Y., Gu, J., & Li, M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02148 · Cited by 151
“…community with sufficient sequence coverage and equal sampling scale, which enables robust and comprehensive assessment on reflecting microbial distribution pattern (Dowd et al., 2008; Schloss et al., 2009; Caporaso et al., 2010, 2012; Angiuoli et al., 2011; Quast et al., 2013; Cole et al., 2014).”
Background
Cattle Tick Rhipicephalus microplus-Host Interface: A Review of Resistant and Susceptible Host Responses
Tabor, A. E., Ali, A., Rehman, G., Garcia, G. R., Zangirolamo, A. F., Malardo, T., & Jonsson, N. N. (2017) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2017.00506 · Cited by 158
“The differences in the composition of their microbiota (Dowd et al., 2008; Durso et al., 2010, 2012; de Oliveira et al., 2013; Mao et al., 2015), as well as the distinct volatile organic compounds (VOC) produced by B. t. taurus and B. t. indicus cattle may corroborate the contrasting tick…”
Background

Authors: Dowd, S. E., Callaway, T. R., Wolcott, R. D., Sun, Y., McKeehan, T., Hagevoort, R. G., & Edrington, T. S.
Affiliations: Agricultural Research Service (US)
Corresponding author: Dowd, Scot E
ORCID: Dowd, Scot E
Callaway, Todd R
Edrington, Thomas S
Venue: BMC Microbiology
Publisher: Springer Science and Business Media LLC
Published: 2008
Volume: 8
Issue: 1
Pages: 125
ISSN: 1471-2180 (ISSN-L)
DOI: 10.1186/1471-2180-8-125
PMC: PMC2515157
OpenAlex: W2105807803
Cited by: 1,121
References: 80
Citations by year: 2026: 16 · 2025: 23 · 2024: 32 · 2023: 32 · 2022: 45 · 2021: 65 · 2020: 52 · 2019: 60 · 2018: 68 · 2017: 105 · 2016: 116 · 2015: 121 · 2014: 129 · 2013: 99 · 2012: 75
FWCI: 11.37
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by
Locations: BMC Microbiology (publishedVersion, cc-by)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders: U.S. Department of Agriculture
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
Keywords: fecal microbiota, bacterial diversity, dairy cattle, Clostridium, Bacteroides, Ruminococcus, Lachnospiraceae, foodborne pathogens, Salmonella, Campylobacter, gut microbiota
MeSH terms: Animals, Bacteria, Cattle, DNA, Bacterial, DNA, Ribosomal, Feces, Female, RNA, Ribosomal, 16S, Polymerase Chain Reaction, Sequence Analysis, DNA, Gastrointestinal Tract, Biodiversity

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Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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