HNF4A is essential for specification of hepatic progenitors from human pluripotent stem cells
Open accessAbstract
The availability of pluripotent stem cells offers the possibility of using such cells to model hepatic disease and development. With this in mind, we previously established a protocol that facilitates the differentiation of both human embryonic stem cells and induced pluripotent stem cells into cells that share many characteristics with hepatocytes. The use of highly defined culture conditions and the avoidance of feeder cells or embryoid bodies allowed synchronous and reproducible differentiation to occur. The differentiation towards a hepatocyte-like fate appeared to recapitulate many of the developmental stages normally associated with the formation of hepatocytes in vivo. In the current study, we addressed the feasibility of using human pluripotent stem cells to probe the molecular mechanisms underlying human hepatocyte differentiation. We demonstrate (1) that human embryonic stem cells express a number of mRNAs that characterize each stage in the differentiation process, (2) that gene expression can be efficiently depleted throughout the differentiation time course using shRNAs expressed from lentiviruses and (3) that the nuclear hormone receptor HNF4A is essential for specification of human hepatic progenitor cells by establishing the expression of the network of transcription factors that controls the onset of hepatocyte cell fate.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In liver, HNF4A is required for normal development, including morphogenesis and differentiation, and controls other TFs critical in liver cell fate as well as genes necessary for hepatocyte functions.
“In liver, HNF4A is required for normal development (2), including morphogenesis (3) and differentiation (4), and controls other TFs critical in liver cell fate as well as genes necessary for hepatocyte functions.”
From Hepatocyte Nuclear Factor 4‐Alpha Is Essential for the Active Epigenetic State at Enhancers in Mouse Liver (2019) · cites this paper as [3]
Cites
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection.
Li, C., & Wong, W. H. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.98.1.31 · Cited by 3,133 · see citing works
Derivation of completely cell culture-derived mice from early-passage embryonic stem cells.
Nagy, A., Rossant, J., Nagy, R., Abramow-Newerly, W., & Roder, J. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.18.8424 · Cited by 2,328 · see citing works
Mutations in the hepatocyte nuclear factor-1α gene in maturity-onset diabetes of the young (MODY3)
Yamagata, K., Oda, N., Kaisaki, P. J., Menzel, S., Furuta, H., Vaxillaire, M., Southam, L., Cox, R., Lathrop, M. G., Boriraj, V. V., et al. (1996) · Nature · doi:10.1038/384455a0 · Cited by 1,610 · see citing works
Rubinson, D. A., Dillon, C. P., Kwiatkowski, A. V., Sievers, C., Yang, L., Kopinja, J. E., Rooney, D. L., Zhang, M., Ihrig, M. M., McManus, M. T., et al. (2003) · Nature Genetics · doi:10.1038/ng1117 · Cited by 1,499 · see citing works
Control of Pancreas and Liver Gene Expression by HNF Transcription Factors
Odom, D. T., Zizlsperger, N., Gordon, D. B., Bell, G. W., Rinaldi, N. J., Murray, H. L., Volkert, T. L., Schreiber, J., Rolfe, A., Gifford, D. K., et al. (2004) · Science · doi:10.1126/science.1089769 · Cited by 1,312 · see citing works
Highly efficient generation of human hepatocyte-like cells from induced pluripotent stem cells
Si-Tayeb, K., Noto, F. K., Nagaoka, M., Li, J., Battle, M. A., Duris, C., North, P. E., Dalton, S., & Duncan, S. A. (2010) · Hepatology · doi:10.1002/hep.23354 · Cited by 1,282 · see citing works
Self-citationHighly Efficient miRNA-Mediated Reprogramming of Mouse and Human Somatic Cells to Pluripotency
Anokye‐Danso, F., Trivedi, C. M., Juhr, D., Gupta, M., Cui, Z., Tian, Y., Zhang, Y., Yang, W., Gruber, P. J., Epstein, J. A., et al. (2011) · Cell stem cell · doi:10.1016/j.stem.2011.03.001 · Cited by 1,206 · see citing works
Hayhurst, G. P., Lee, Y.-H., Lambert, G., Ward, J. M., & Gonzalez, F. J. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.4.1393-1403.2001 · Cited by 1,107 · see citing works
Mutations in the hepatocyte nuclear factor-4α gene in maturity-onset diabetes of the young (MODY1)
Yamagata, K., Furuta, H., Oda, N., Kaisaki, P. J., Menzel, S., Cox, N. J., Fajans, S. S., Signorini, S. G., Stoffel, M., & Bell, G. I. (1996) · Nature · doi:10.1038/384458a0 · Cited by 975 · see citing works
Organogenesis and development of the liver
Si-Tayeb, K., Lemaigre, F. P., & Duncan, S. A. (2010) · Developmental Cell · doi:10.1016/j.devcel.2010.01.011 · Cited by 800 · see citing works
Self-citationiPS cells produce viable mice through tetraploid complementation
Zhao, X., Li, W., Lv, Z., Liu, L., Tong, M., Hai, T., Hao, J., Guo, C., Ma, Q., Wang, L., et al. (2009) · Nature · doi:10.1038/nature08267 · Cited by 778 · see citing works
Directed differentiation of human embryonic stem cells into functional hepatic cells†
Cai, J., Zhao, Y., Liu, Y., Ye, F., Song, Z., Qin, H., Meng, S., Chen, Y., Zhou, R., Song, X., et al. (2007) · Hepatology · doi:10.1002/hep.21582 · Cited by 628 · see citing works
Generation and Regeneration of Cells of the Liver and Pancreas
Zaret, K., & Grompe, M. (2008) · Science · doi:10.1126/science.1161431 · Cited by 601 · see citing works
Parviz, F., Matullo, C., Garrison, W. D., Savatski, L., Adamson, J. W., Ning, G., Kaestner, K. H., Rossi, J. M., Zaret, K. S., & Duncan, S. A. (2003) · Nature Genetics · doi:10.1038/ng1175 · Cited by 588 · see citing works
Self-citationThe initiation of liver development is dependent on Foxa transcription factors
Lee, C. S., Friedman, J. R., Fulmer, J. T., & Kaestner, K. H. (2005) · Nature · doi:10.1038/nature03649 · Cited by 581 · see citing works
Chen, W. S., Manova, K., Weinstein, D. C., Duncan, S. A., Plump, A. S., Prezioso, V. R., Bachvarova, R. F., & Darnell, J. E., Jr. (1994) · Genes & Development · doi:10.1101/gad.8.20.2466 · Cited by 553 · see citing works
Self-citationDifferentiation and Transplantation of Human Embryonic Stem Cell–Derived Hepatocytes
Basma, H., Soto–Gutiérrez, A., Yannam, G. R., Liu, L., Ito, R., Yamamoto, T., Ellis, E. C. S., Carson, S. D., Sato, S., Chen, Y., et al. (2008) · Gastroenterology · doi:10.1053/j.gastro.2008.10.047 · Cited by 509 · see citing works
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
Odom, D. T., Dowell, R. D., Jacobsen, E. S., Gordon, W., Danford, T. W., MacIsaac, K. D., Rolfe, P. A., Conboy, C. M., Gifford, D. K., & Fraenkel, E. (2007) · Nature Genetics · doi:10.1038/ng2047 · Cited by 506 · see citing works
Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha.
(2000) · PubMed Central · Cited by 489 · see citing works
Self-citationiPS cells can support full-term development of tetraploid blastocyst-complemented embryos.
Kang, L., Wang, J., Zhang, Y., Kou, Z.-H., & Gao, S.-R. (2009) · Cell Stem Cell · doi:10.1016/j.stem.2009.07.001 · Cited by 488 · see citing works
Adult mice generated from induced pluripotent stem cells
Boland, M. J., Hazen, J. L., Nazor, K. L., Rodriguez, A. R., Gifford, W. D., Martin, G., Kupriyanov, S., & Baldwin, K. (2009) · Nature · doi:10.1038/nature08310 · Cited by 479 · see citing works
Martı́nez-Barberá, J. P., Clements, M., Thomas, P. Q., Rodríguez, T. A., Meloy, D., Kioussis, D., & Beddington, R. S. P. (2000) · Development · doi:10.1242/dev.127.11.2433 · Cited by 474 · see citing works
McLean, A. B., D’Amour, K. A., Jones, K. L., Krishnamoorthy, M., Kulik, M. J., Reynolds, D. M., Sheppard, A. M., Liu, H., Xu, Y., Baetge, E. E., et al. (2007) · Stem Cells · doi:10.1634/stemcells.2006-0219 · Cited by 473 · see citing works
Mammalian hepatocyte differentiation requires the transcription factor HNF-4αPreprint
Li, J., Ning, G., & Duncan, S. A. (2000) · Genes & Development · doi:10.1101/gad.14.4.464 · Cited by 458 · see citing works
Self-citationEfficient Differentiation of Functional Hepatocytes from Human Embryonic Stem Cells
Agarwal, S., Holton, K., & Lanza, R. (2008) · Stem Cells · doi:10.1634/stemcells.2007-1102 · Cited by 402 · see citing works
Duncan, S. A., Manova, K., Chen, W. S., Hoodless, P. A., Weinstein, D. C., Bachvarova, R. F., & Darnell, J. E., Jr. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.16.7598 · Cited by 366 · see citing works
Self-citationNS21: Re-defined and modified supplement B27 for neuronal cultures
Chen, Y., Stevens, B., Chang, J., Milbrandt, J., Barres, B. A., & Hell, J. W. (2008) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2008.03.013 · Cited by 304 · see citing works
Duncan, S. A., Nagy, A., & Chan, W. (1997) · Development · doi:10.1242/dev.124.2.279 · Cited by 291 · see citing works
Self-citationBort, R., Signore, M., Tremblay, K. D., Martı́nez-Barberá, J. P., & Zaret, K. S. (2005) · Developmental Biology · doi:10.1016/j.ydbio.2005.11.006 · Cited by 285 · see citing works
Kyrmizi, I., Hatzis, P., Katrakili, N., Tronche, F., Gonzalez, F. J., & Talianidis, I. (2006) · Genes & Development · doi:10.1101/gad.390906 · Cited by 285 · see citing works
Bort, R., Martinez-Barbera, J. P., Beddington, R. S. P., & Zaret, K. S. (2004) · Development · doi:10.1242/dev.00965 · Cited by 267 · see citing works
Lemaigre, F. P. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.03.035 · Cited by 263 · see citing works
Ge, X., Yamamoto, S., Tsutsumi, S., Midorikawa, Y., Ihara, S., Wang, S. M., & Aburatani, H. (2005) · Genomics · doi:10.1016/j.ygeno.2005.04.008 · Cited by 248 · see citing works
Battle, M. A., Konopka, G., Parviz, F., Gaggl, A. L., Yang, C., Sladek, F. M., & Duncan, S. A. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0600246103 · Cited by 246 · see citing works
Self-citationDevelopment of the mammalian liver and ventral pancreas is dependent on GATA4
Watt, A. J., Zhao, R., Li, J., & Duncan, S. A. (2007) · BMC Developmental Biology · doi:10.1186/1471-213x-7-37 · Cited by 206 · see citing works
Self-citationNagaoka, M., Si‐Tayeb, K., Akaike, T., & Duncan, S. A. (2010) · BMC Developmental Biology · doi:10.1186/1471-213x-10-60 · Cited by 192 · see citing works
Self-citationKeng, V. W., Yagi, H., Ikawa, M., Nagano, T., Myint, Z. W., Yamada, K., Tanaka, T., Sato, A., Muramatsu, I., Okabe, M., et al. (2000) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2000.3548 · Cited by 183 · see citing works
Bolotin, E., Liao, H., Ta, T. C., Yang, C., Hwang‐Verslues, W. W., Evans, J. R., Jiang, T., & Sladek, F. M. (2009) · Hepatology · doi:10.1002/hep.23357 · Cited by 173 · see citing works
Characterization of the mouse HNF-4 gene and its expression during mouse embryogenesis
Taraviras, S. L., Monaghan, A. P., Schütz, G., & Kelsey, G. (1994) · Mechanisms of Development · doi:10.1016/0925-4773(94)90017-5 · Cited by 166 · see citing works
Suzuki, A., Sekiya, S., Büscher, D., Izpisúa Belmonte, J. C., & Taniguchi, H. (2008) · Development · doi:10.1242/dev.016634 · Cited by 136 · cited 1× · see citing works
“As a comparative standard, we chose to relate signal levels to those measured for TBX3 because TBX3 has been shown to be required for mouse liver development (Suzuki et al., 2008; Ludtke et al., 2009).”
BackgroundLüdtke, T. H. ‐., Christoffels, V. M., Petry, M., & Kispert, A. (2009) · Hepatology · doi:10.1002/hep.22700 · Cited by 117 · cited 3× · see citing works
“The raw signal values for TBX3 obtained from the oligonucleotide array data appear to mimic Tbx3 mRNA levels described during mouse hepatogenesis (Ludtke et al., 2009), with an average signal value of 943.”
BackgroundInfluentialDifferentiation of mouse and human embryonic stem cells into hepatic lineages
Shiraki, N., Umeda, K., Sakashita, N., Takeya, M., Kume, K., & Kume, S. (2008) · Genes to Cells · doi:10.1111/j.1365-2443.2008.01201.x · Cited by 112 · see citing works
Crucial role of vHNF1 in vertebrate hepatic specification
Lokmane, L., Haumaître, C., García-Villalba, P., Anselme, I., Schneider-Maunoury, S., & Cereghini, S. (2008) · Development · doi:10.1242/dev.023010 · Cited by 106 · see citing works
Griffo, G., Hamon-Benais, C., Angrand, P., Fox, M., West, L. F., Lecoq, O., Povey, S., Cassio, D., & Weiss, M. C. (1993) · The Journal of Cell Biology · doi:10.1083/jcb.121.4.887 · Cited by 71 · see citing works
Serum-Free Media for Neural Cell Cultures: Adult and Embryonic
Price, P. J., & Brewer, G. J. (2003) · Humana Press eBooks · doi:10.1385/1-59259-207-4:255 · Cited by 55 · see citing works
Konopka, G., Tekiela, J., Iverson, M., Wells, C. W., & Duncan, S. A. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m703592200 · Cited by 51 · see citing works
Self-citationthe Homeobox Gene Hex Regulates Hepatocyte Differentiation From Embryonic Stem Cell–Derived Endoderm
Kubo, A., Kim, Y. H., Irion, S., Kasuda, S., Takeuchi, M., Ohashi, K., Iwano, M., Dohi, Y., Saito, Y., Snodgrass, R., et al. (2009) · Hepatology · doi:10.1002/hep.23293 · Cited by 43 · see citing works
Chiao, E. T., Elazar, M., Xing, Y., Xiong, A., Kmet, M., Millan, M. T., Glenn, J. S., Wong, W. H., & Baker, J. C. (2008) · Stem Cells · doi:10.1634/stemcells.2007-0964 · Cited by 42 · see citing works
Guo, Y., Zhang, X., Huang, J., Zeng, Y. J., Liu, W., Geng, C., Li, K. W., Yang, D. C., Wu, S., Wei, H., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007641 · Cited by 36 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Deterministically patterned biomimetic human iPSC-derived hepatic model via rapid 3D bioprinting
Ma, X., Qu, X., Zhu, W. Z., Li, Y.-S. J., Yuan, S., Zhang, H., Liu, J., Wang, P., Lai, C. S. E., Zanella, F., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1524510113 · Cited by 880 · see citing works
In vitro generation of human pluripotent stem cell derived lung organoids
Dye, B. R., Hill, D. R., Ferguson, M. A. H., Tsai, Y.-H., Nagy, M. S., Dyal, R., Wells, J. M., Mayhew, C. N., Nattiv, R., Klein, O. D., et al. (2015) · eLife · doi:10.7554/elife.05098 · Cited by 824 · see citing works
Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
Gifford, C. A., Ziller, M. J., Gu, H., Trapnell, C., Donaghey, J., Tsankov, A., Shalek, A. K., Kelley, D. R., Shishkin, A. A., Issner, R., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.037 · Cited by 435 · see citing works
Orchestrating liver development
Gordillo, M., Evans, T., & Gouon-Evans, V. (2015) · Development · doi:10.1242/dev.114215 · Cited by 375 · see citing works
Baxter, M. A., Withey, S., Harrison, S. P., Segeritz, C., Zhang, F., Atkinson-Dell, R., Rowe, C., Gerrard, D. T., Sison-Young, R. L. C., Jenkins, R., et al. (2014) · Journal of Hepatology · doi:10.1016/j.jhep.2014.10.016 · Cited by 353 · see citing works
Zachos, N., Kovbasnjuk, O., Foulke-Abel, J. D., In, J. G., Blutt, S., de Jonge, H. D., Estes, M., & Donowitz, M. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.r114.635995 · Cited by 261 · see citing works
Transposable elements are the primary source of novelty in primate gene regulationPreprint
Trizzino, M., Park, Y., Beltrame, M. H., Aracena, K. A., Mika, K. M., Çalışkan, M., Perry, G. H., Lynch, V. J., & Brown, C. D. (2017) · Genome Research · doi:10.1101/gr.218149.116 · Cited by 273 · see citing works
Shlomai, A., Schwartz, R. E., Ramanan, V., Bhatta, A., de Jong, Y. P., Bhatia, S. N., & Rice, C. M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1412631111 · Cited by 258 · see citing works
The molecular functions of hepatocyte nuclear factors – In and beyond the liver
Lau, H. H., Ng, N. H. J., Loo, L. S. W., Jasmen, J. B., & Teo, A. K. K. (2018) · Journal of Hepatology · doi:10.1016/j.jhep.2017.11.026 · Cited by 250 · see citing works
Wells, J. M., & Spence, J. (2014) · Development · doi:10.1242/dev.097386 · Cited by 168 · see citing works
Cayo, M. A., Cai, J., DeLaForest, A., Noto, F. K., Nagaoka, M., Clark, B. S., Collery, R. F., Si‐Tayeb, K., & Duncan, S. A. (2012) · Hepatology · doi:10.1002/hep.25871 · Cited by 148 · see citing works
Self-citationEngrafted human stem cell–derived hepatocytes establish an infectious HCV murine model
Carpentier, A., Tesfaye, A., Chu, V., Nimgaonkar, I., Zhang, F., Lee, S. B., Thorgeirsson, S. S., Feinstone, S. M., & Liang, T. J. (2014) · Journal of Clinical Investigation · doi:10.1172/jci75456 · Cited by 146 · see citing works
Zhu, P., Wang, Y., Du, Y., He, L., Huang, G., Zhang, G., Yan, X., & Fan, Z. (2015) · Nature Communications · doi:10.1038/ncomms8122 · Cited by 141 · see citing works
Mapping gene regulatory circuitry of Pax6 during neurogenesis
Thakurela, S., Tiwari, N., Schick, S., Garding, A., Ivánek, R., Berninger, B., & Tiwari, V. K. (2016) · Cell Discovery · doi:10.1038/celldisc.2015.45 · Cited by 131 · see citing works
Bipotent transitional liver progenitor cells contribute to liver regeneration
Pu, W., Zhu, H., Zhang, M., Pikiolek, M., Ercan, C., Li, J., Huang, X., Han, X., Zhang, Z., Lv, Z., et al. (2023) · Nature Genetics · doi:10.1038/s41588-023-01335-9 · Cited by 138 · see citing works
Identification of a functional antioxidant response element at the HIF1A locus
Lacher, S. E., Levings, D. C., Freeman, S., & Slattery, M. G. (2018) · Redox Biology · doi:10.1016/j.redox.2018.08.014 · Cited by 117 · see citing works
Trynka, G., Westra, H.-J., Slowikowski, K., Hu, X., Xu, H., Stranger, B. E., Klein, R. J., Han, B., & Raychaudhuri, S. (2015) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.05.016 · Cited by 114 · see citing works
Yu, Y., Liu, H., Ikeda, Y., Amiot, B. P., Rinaldo, P., Duncan, S. A., & Nyberg, S. L. (2012) · Stem Cell Research · doi:10.1016/j.scr.2012.06.004 · Cited by 111 · see citing works
Self-citationBeggs, K. M., McGreal, S. R., McCarthy, A., Gunewardena, S., Lampe, J. N., Lau, C., & Apte, U. M. (2016) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2016.05.001 · Cited by 105 · see citing works
Stem cell-derived polarized hepatocytes
Thi, V. L. D., Wu, X., Belote, R. L., Andréo, U., Takacs, C. N., Fernandez, J., Vale-Silva, L. A., Prallet, S., Decker, C. C., Fu, R., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-15337-2 · Cited by 100 · see citing works
Deng, X., Qiu, R., Wu, Y., Li, Z., Xie, P., Zhang, J., Zhou, J., Zeng, L., Tang, J., Maharjan, A., et al. (2013) · Liver International · doi:10.1111/liv.12239 · Cited by 92 · see citing works
Zhang, K., Wang, M., Zhao, Y., & Wang, W. (2019) · Science Advances · doi:10.1126/sciadv.aav3262 · Cited by 82 · see citing works
Kim, H., Im, I., Jeon, J. S., Kang, E.-H., Lee, H., Jo, S., Kim, J., Woo, D., Choi, Y. J., Kim, H. J., et al. (2022) · Biomaterials · doi:10.1016/j.biomaterials.2022.121575 · Cited by 82 · see citing works
Hormonal Regulation of Liver Cytochrome P450 Enzymes
Waxman, D. J., & Chang, T. K. H. (2015) · Springer eBooks · doi:10.1007/978-3-319-12108-6_11 · Cited by 78 · see citing works
Human Pluripotent Stem Cell-Derived Endoderm for Modeling Development and Clinical Applications
Yiangou, L., Ross, A., Goh, K. J., & Vallier, L. (2018) · Cell stem cell · doi:10.1016/j.stem.2018.03.016 · Cited by 78 · see citing works
Magner, N. L., Jung, Y., Wu, J., Nolta, J. A., Zern, M. Α., & Zhou, P. (2013) · Stem Cells · doi:10.1002/stem.1478 · Cited by 77 · see citing works
Thakur, A., Wong, J. C. H., Wang, E. Y., Lotto, J., Kim, D., Cheng, J., Mingay, M., Cullum, R., Moudgil, V., Ahmed, N., et al. (2019) · Hepatology · doi:10.1002/hep.30631 · Cited by 75 · see citing works
“(1) In liver, HNF4A is required for normal development,(2) including morphogenesis(3) and differentiation,(4) and controls other TFs critical in liver cell fate as well as genes necessary for hepatocyte functions.”
BackgroundPan-Genotype Hepatitis E Virus Replication in Stem Cell–Derived Hepatocellular Systems
Wu, X., Thi, V. L. D., Liu, P., Takacs, C. N., Xiang, K., Andrus, L., Gouttenoire, J., Moradpour, D., & Rice, C. M. (2017) · Gastroenterology · doi:10.1053/j.gastro.2017.10.041 · Cited by 72 · see citing works
Peters, D. T., Henderson, C. A., Warren, C. R., Friesen, M., Xia, F., Becker, C. E., Musunuru, K., & Cowan, C. A. (2016) · Development · doi:10.1242/dev.132209 · Cited by 68 · see citing works
Human Induced Pluripotent Stem Cells in Hepatology
Gerbal‐Chaloin, S., Funakoshi, N., Caillaud, A., Gondeau, C., Champon, B., & Si‐Tayeb, K. (2013) · American Journal Of Pathology · doi:10.1016/j.ajpath.2013.09.026 · Cited by 64 · see citing works
Self-citationGATA6 is essential for endoderm formation from human pluripotent stem cells
Fisher, J. B., Pulakanti, K., Rao, S., & Duncan, S. A. (2017) · Biology Open · doi:10.1242/bio.026120 · Cited by 62 · see citing works
Self-citationLimited oxygen in standard cell culture alters metabolism and function of differentiated cells
Tan, J., Virtue, S., Norris, D. M., Conway, O. J., Yang, M. H., Bidault, G., Gribben, C., Lugtu, F., Kamzolas, I., Krycer, J. R., et al. (2024) · The EMBO Journal · doi:10.1038/s44318-024-00084-7 · Cited by 61 · see citing works
The Pharmacology of Regenerative Medicine
Christ, G. J., Saul, J. M., Furth, M. E., & Andersson, K. (2013) · Pharmacological Reviews · doi:10.1124/pr.112.007393 · Cited by 61 · see citing works
Wijetunga, N. A., Pascual, M., Tozour, J. N., Delahaye, F., Alani, M. T., Adeyeye, M., Wolkoff, A. W., Verma, A. K., & Greally, J. M. (2016) · Oncogene · doi:10.1038/onc.2016.340 · Cited by 55 · see citing works
DeLaForest, A., Furio, F. D., Jing, R., Ludwig-Kubinski, A., Twaroski, K., Urick, A., Pulakanti, K., Rao, S., & Duncan, S. A. (2018) · Genes · doi:10.3390/genes10010021 · Cited by 56 · see citing works
Self-citationPan, J., Silva, T. C., Gull, N., Yang, Q., Plummer, J., Chen, S., Daigo, K., Hamakubo, T., Gery, S., Ding, L., et al. (2020) · Cancer Research · doi:10.1158/0008-5472.can-20-0390 · Cited by 55 · see citing works
Ng, N. H. J., Jasmen, J. B., Lim, C. S., Lau, H. H., Krishnan, V. G., Kadiwala, J., Kulkarni, R. N., Ræder, H., Vallier, L., Hoon, S., et al. (2019) · iScience · doi:10.1016/j.isci.2019.05.032 · Cited by 54 · see citing works
Takayama, K., Kawabata, K., Nagamoto, Y., Inamura, M., Ohashi, K., Okuno, H., Yamaguchi, T., Tashiro, K., Sakurai, F., Hayakawa, T., et al. (2013) · Development · doi:10.1242/dev.103168 · Cited by 54 · see citing works
Sgodda, M., Dai, Z., Zweigerdt, R., Sharma, A. D., Ott, M., & Cantz, T. (2017) · Stem Cells and Development · doi:10.1089/scd.2017.0023 · Cited by 53 · see citing works
Twaroski, K., Mallanna, S. K., Jing, R., Furio, F. D., Urick, A., & Duncan, S. A. (2015) · Genes & Development · doi:10.1101/gad.268961.115 · Cited by 52 · see citing works
Self-citationPrimate-specific ZNF808 is essential for pancreatic development in humans
Franco, E. D., Owens, N. D. L., Montaser, H., Wakeling, M. N., Saarimäki‐Vire, J., Triantou, A., Ibrahim, H., Balboa, D., Caswell, R. C., Jennings, R. E., et al. (2023) · Nature Genetics · doi:10.1038/s41588-023-01565-x · Cited by 51 · see citing works
Shi, X., Cheng, Q., Xu, L., Yan, J., Jiang, M., He, J., Xu, M., Stefanović-Račić, M., SIPULA, I. J., O'Doherty, R. M., et al. (2013) · Molecular and Cellular Biology · doi:10.1128/mcb.01094-13 · Cited by 51 · see citing works
Transcriptional Networks in Liver and Intestinal DevelopmentPreprint
Sheaffer, K. L., & Kaestner, K. H. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a008284 · Cited by 50 · see citing works
Si‐Tayeb, K., Idriss, S., Champon, B., Caillaud, A., Pichelin, M., Arnaud, L., Lemarchand, P., May, C. L., Zibara, K., & Cariou, B. (2015) · Disease Models & Mechanisms · doi:10.1242/dmm.022277 · Cited by 50 · see citing works
Self-citationA Gutsy Task: Generating Intestinal Tissue from Human Pluripotent Stem Cells
Finkbeiner, S. R., & Spence, J. (2013) · Digestive Diseases and Sciences · doi:10.1007/s10620-013-2620-2 · Cited by 53 · see citing works
GATA4 loss of function in liver cancer impedes precursor to hepatocyte transition
Enane, F. O., Shuen, T. W. H., Gu, X., Ebrahem, Q., Przychodzen, B. P., Makishima, H., Bodo, J., Ng, J., Chee, C. L., Ba, R., et al. (2017) · Journal of Clinical Investigation · doi:10.1172/jci93488 · Cited by 48 · see citing works
Cozzolino, A. M., Alonzi, T., Santangelo, L., Mancone, C., Conti, B., Steindler, C., Musone, M., Cicchini, C., Tripodi, M., & Marchetti, A. (2012) · Journal of Hepatology · doi:10.1016/j.jhep.2012.08.023 · Cited by 48 · see citing works
Ko, H. L., Zhuo, Z., & Ren, E. C. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.02.033 · Cited by 48 · see citing works
Fetal liver development and implications for liver disease pathogenesis
Lotto, J., Stephan, T. L., & Hoodless, P. A. (2023) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-023-00775-2 · Cited by 47 · see citing works
Wu, N., Zhang, Y., Wang, H.-T., Li, D., Dai, H., Zhang, Q.-Q., Zhang, J., Ma, Y., Xia, Q., Bian, J., et al. (2016) · Cancer Biology & Therapy · doi:10.1080/15384047.2016.1177675 · Cited by 47 · see citing works
Gene regulatory networks in differentiation and direct reprogramming of hepatic cells
Gérard, C., Tys, J., & Lemaigre, F. P. (2016) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2016.12.003 · Cited by 46 · see citing works
Xue, D., Narisu, N., Taylor, D. L., Zhang, M., Grenko, C. M., Taylor, H. J., Yan, T., Tang, X., Sinha, N., Zhu, J., et al. (2023) · Cell Metabolism · doi:10.1016/j.cmet.2023.09.013 · Cited by 46 · see citing works
Mallanna, S. K., Cayo, M. A., Twaroski, K., Gundry, R. L., & Duncan, S. A. (2016) · Stem Cell Reports · doi:10.1016/j.stemcr.2016.07.016 · Cited by 44 · see citing works
Self-citationHNF4α in Hepatocyte Health and Disease
Kotulkar, M., Robarts, D. R., & Apte, U. M. (2023) · Seminars in Liver Disease · doi:10.1055/a-2097-0660 · Cited by 43 · see citing works
Algorithm for cellular reprogramming
Ronquist, S., Patterson, G., Muir, L. A., Lindsly, S., Chen, H., Brown, M. A., Wicha, M. S., Bloch, A. M., Brockett, R. W., & Rajapakse, I. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1712350114 · Cited by 40 · see citing works
Tissue Engineering: Future Perspectives
Furth, M., & Atala, A. (2014) · Elsevier eBooks · doi:10.1016/b978-0-12-398358-9.00006-9 · Cited by 22 · see citing works
Chaudhari, P., Tian, L., Deshmukh, A. P., & Jang, Y.-Y. (2016) · Experimental Biology and Medicine · doi:10.1177/1535370216657901 · Cited by 39 · see citing works
Yilmaz, A., Braverman-Gross, C., Bialer-Tsypin, A., Peretz, M., & Benvenisty, N. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.06.023 · Cited by 39 · see citing works
Elucidating the Proximal Tubule HNF4A Gene Regulatory Network in Human Kidney Organoids
Yoshimura, Y., Muto, Y., Omachi, K., Miner, J. H., & Humphreys, B. D. (2023) · Journal of the American Society of Nephrology · doi:10.1681/asn.0000000000000197 · Cited by 38 · see citing works
Gene manipulation in liver ductal organoids by optimized recombinant adeno-associated virus vectors
Wei, J., Ran, G., Wang, X., Jiang, N., Liang, J., Lin, X., Ling, C., & Zhao, B. T. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra119.008616 · Cited by 36 · see citing works
The Use of Induced Pluripotent Stem Cells for the Study and Treatment of Liver Diseases
Hansel, M., Dávila, J., Vosough, M., Gramignoli, R., Skvorak, K. J., Dorko, K., Marongiu, F., Blake, W., & Strom, S. C. (2016) · Current Protocols in Toxicology · doi:10.1002/0471140856.tx1413s67 · Cited by 39 · see citing works
Jing, R., Duncan, C. B., & Duncan, S. A. (2017) · Development · doi:10.1242/dev.146845 · Cited by 36 · see citing works
Self-citationProtocol for directed differentiation of human pluripotent stem cells toward a hepatocyte fate
Cai, J. (2010) · StemBook · doi:10.3824/stembook.1.52.1 · Cited by 35 · see citing works
Fekry, B., Ribas‐Latre, A., Baumgartner, C., Mohamed, A. M. T., Kolonin, M. G., Sladek, F. M., Younes, M., & Eckel‐Mahan, K. L. (2019) · Cancer Research · doi:10.1158/0008-5472.can-19-1277 · Cited by 35 · see citing works
Savic, D., Roberts, B. S., Carleton, J. B., Partridge, E. C., White, M. A., Cohen, B. A., Cooper, G. M., Gertz, J., & Myers, R. (2015) · Genome Research · doi:10.1101/gr.191593.115 · Cited by 33 · see citing works
Celastrol, an oral heat shock activator, ameliorates multiple animal disease models of cell death
Sharma, S., Mishra, R., Walker, B. L., Deshmukh, S., Zampino, M., Patel, J. A., Anamalai, M., SIMPSON, D. L., Singh, I. S., Kaushal, S., et al. (2014) · Cell Stress and Chaperones · doi:10.1007/s12192-014-0536-1 · Cited by 33 · see citing works
A Pathway to Personalizing Therapy for Metastases Using Liver-on-a-Chip Platforms
Khazali, A. S., Clark, A. M., & Wells, A. H. (2017) · Stem Cell Reviews and Reports · doi:10.1007/s12015-017-9735-3 · Cited by 31 · see citing works
Taniguchi, H., Fujimoto, A., Kono, H., Furuta, M., Fujita, M., & Nakagawa, H. (2018) · Oncotarget · doi:10.18632/oncotarget.25456 · Cited by 32 · see citing works
Varghese, D. S., Alawathugoda, T. T., & Ansari, S. A. (2019) · Stem Cells International · doi:10.1155/2019/5968236 · Cited by 32 · see citing works
Divergent WNT signaling and drug sensitivity profiles within hepatoblastoma tumors and organoids
Kluiver, T. A., Lu, Y., Schubert, S. A., Kraaier, L. J., Ringnalda, F. C. A. S., Lijnzaad, P., DeMartino, J., Megchelenbrink, W., Amo-Addae, V., Eising, S., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-52757-w · Cited by 31 · see citing works
Tamminen, K., Balboa, D., Toivonen, S., Pakarinen, M., Wiener, Z., Alitalo, K., & Otonkoski, T. (2015) · PLoS ONE · doi:10.1371/journal.pone.0134551 · Cited by 31 · see citing works
Tryndyak, V., Marrone, A. K., Latendresse, J. R., Muskhelishvili, L., Beland, F. A., & Pogribny, I. P. (2015) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2015.10.001 · Cited by 31 · see citing works
Lorvellec, M., Scottoni, F., Crowley, C., Fiadeiro, R., Maghsoudlou, P., Pellegata, A. F., Mazzacuva, F., Gjinovci, A., Lyne, A.-M., Zulini, J., et al. (2017) · PLoS ONE · doi:10.1371/journal.pone.0189586 · Cited by 30 · see citing works
Ramaker, R. C., Hardigan, A. A., Goh, S.-T., Partridge, E. C., Wold, B. J., Cooper, S. J., & Myers, R. (2020) · Genome Research · doi:10.1101/gr.260463.119 · Cited by 30 · see citing works
Yan, C., Yang, Q., Shen, H., Spitsbergen, J. M., & Gong, Z. (2017) · Oncotarget · doi:10.18632/oncotarget.20357 · Cited by 29 · see citing works
RetractedKogiso, T., Nagahara, H., Otsuka, M., Shiratori, K., & Dowdy, S. F. (2013) · Hepatology International · doi:10.1007/s12072-013-9432-5 · Cited by 26 · see citing works
Tomizawa, M., Shinozaki, F., Motoyoshi, Y., Sugiyama, T., Yamamoto, S., & Ishige, N. (2016) · Journal of Cellular Biochemistry · doi:10.1002/jcb.25494 · Cited by 27 · see citing works
CEN‐tools: an integrative platform to identify the contexts of essential genes
Sharma, S., Dinçer, C., Weidemüller, P., Wright, G. J., & Petsalaki, E. (2020) · Molecular Systems Biology · doi:10.15252/msb.20209698 · Cited by 25 · see citing works
Hu, X., Yan, X., Hu, Y., Huang, J., Cao, S., Ren, T., Tang, Y., Li, L., Zheng, L., & Wang, Q. (2015) · Hepatology Research · doi:10.1111/hepr.12618 · Cited by 25 · see citing works
Umeda, K., Suzuki, K., Yamazoe, T., Shiraki, N., Higuchi, Y., Tokieda, K., Kume, K., Mitani, K., & Kume, S. (2012) · Stem Cell Research · doi:10.1016/j.scr.2012.11.003 · Cited by 24 · see citing works
Davoodian, N., Lotfi, A. S., Soleimani, M., Mola, S. J., & Arjmand, S. (2014) · Journal of Physiology and Biochemistry · doi:10.1007/s13105-014-0346-z · Cited by 24 · see citing works
Palaria, A., Angelo, J. R., Guertin, T. M., Mager, J., & Tremblay, K. D. (2018) · Hepatology · doi:10.1002/hep.29769 · Cited by 24 · see citing works
Toivonen, S., Malinen, M. M., Küblbeck, J., Petsalo, A., Urtti, A. O., Honkakoski, P., & Otonkoski, T. (2016) · Tissue Engineering Part A · doi:10.1089/ten.tea.2016.0127 · Cited by 24 · see citing works
Liver Renewal: Detecting Misrepair and Optimizing Regeneration
Machado, M. V., & Diehl, A. M. (2014) · Mayo Clinic Proceedings · doi:10.1016/j.mayocp.2013.10.009 · Cited by 24 · see citing works
Nagaoka, M., Kobayashi, M., Chie, K., Mallanna, S. K., & Duncan, S. A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0136350 · Cited by 23 · see citing works
Self-citationThe Use of Human Pluripotent Stem Cells for Modeling Liver Development and Disease
Heslop, J. A., & Duncan, S. A. (2018) · Hepatology · doi:10.1002/hep.30288 · Cited by 23 · see citing works
Self-citationEffects of Co-Culture Media on Hepatic Differentiation of hiPSC with or without HUVEC Co-Culture
Freyer, N., Greuel, S., Knöspel, F., Strahl, N., Amini, L., Jacobs, F., Monshouwer, M., & Zeilinger, K. (2017) · International Journal of Molecular Sciences · doi:10.3390/ijms18081724 · Cited by 23 · see citing works
Török, G., Erdei, Z., Lilienberg, J., Apáti, Á., & Homolya, L. (2020) · PLoS ONE · doi:10.1371/journal.pone.0227751 · Cited by 23 · see citing works
Signalling pathways and transcriptional regulators orchestrating liver development and cancer
Campbell, S. A., Stephan, T. L., Lotto, J., Cullum, R., Drissler, S., & Hoodless, P. A. (2021) · Development · doi:10.1242/dev.199814 · Cited by 22 · see citing works
Rhee, S., Guerrero-Zayas, M.-I., Wallingford, M. C., Ortíz-Pineda, P. A., Mager, J., & Tremblay, K. D. (2013) · PLoS ONE · doi:10.1371/journal.pone.0058828 · Cited by 22 · see citing works
Chen, K.-T., Pernelle, K., Tsai, Y.-H., Wu, Y., Hsieh, J.-Y., Liao, K., Guguen‐Guillouzo, C., & Wang, H. (2014) · Journal of Hepatology · doi:10.1016/j.jhep.2014.07.025 · Cited by 21 · see citing works
Engineered Platforms for Maturing Pluripotent Stem Cell–Derived Liver Cells for Disease Modeling
Yuan, Y., Cotton, K., Samarasekera, D. N., & Khetani, S. R. (2023) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2023.01.013 · Cited by 21 · see citing works
Hu, X., Xie, P., Li, W., Li, Z., & Shan, H. (2016) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2016.08.026 · Cited by 21 · see citing works
Tissue-Engineered Bile Ducts for Disease Modeling and Therapy
Wang, Z., Faria, J., Penning, L. C., Masereeuw, R., & Spee, B. (2020) · Tissue Engineering Part C Methods · doi:10.1089/ten.tec.2020.0283 · Cited by 21 · see citing works
Tan, H., Leung, C. O., Chan, K. K., Ho, D. W., Leung, M., Wong, C., Ng, I. O., & Lo, R. C. (2019) · International Journal of Cancer · doi:10.1002/ijc.32248 · Cited by 22 · see citing works
Balancing metabolism and regeneration in liver diseases through HNF4α targeting
Dender, C. V., Vandewalle, J., & Libert, C. (2025) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2025.04.003 · Cited by 20 · see citing works
Oncogenic STRAP Supports Hepatocellular Carcinoma Growth by Enhancing Wnt/β-Catenin Signaling
Wang, W., Li, S., Liu, P., Sideras, K., van de Werken, H. J. G., van der Heide, M., Cao, W., Lavrijsen, M., Peppelenbosch, M. P., Bruno, M. J., et al. (2018) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-18-0054 · Cited by 20 · see citing works
Delamare, M., Roy, A. L., Pacault, M., Schmitt, L., Garrec, C., Maaziz, N., Myllykoski, M., Rimbert, A., Karaghiannis, V., Aral, B., et al. (2023) · Haematologica · doi:10.3324/haematol.2023.282913 · Cited by 21 · see citing works
Self-citationHurrell, T., Segeritz, C., Vallier, L., Lilley, K. S., & Cromarty, D. (2019) · Scientific Reports · doi:10.1038/s41598-019-39400-1 · Cited by 20 · see citing works
Wang, A., & Sander, M. (2012) · Journal of molecular medicine · doi:10.1007/s00109-012-0923-y · Cited by 18 · see citing works
- Authors
- DeLaForest, A., Nagaoka, M., Si-Tayeb, K., Noto, F. K., Konopka, G., Battle, M. A., & Duncan, S. A.
- Affiliations
- Medical College of Wisconsin (US)
- Department of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA.
- David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.
- Corresponding author
- Duncan, Stephen A.
- ORCID
- Duncan, Stephen A.
- Venue
- Development
- Publisher
- The Company of Biologists
- Published
- 2011-10-01
- Volume
- 138
- Issue
- 19
- Pages
- 4143-4153
- ISSN
- 0950-1991 (ISSN-L)
- 1477-9129
- PMC
- PMC3171218
- OpenAlex
- W1997086295
- Cited by
- 219
- References
- 49
- Citations by year
- 2026: 8 · 2025: 13 · 2024: 9 · 2023: 17 · 2022: 9 · 2021: 12 · 2020: 16 · 2019: 13 · 2018: 11 · 2017: 22 · 2016: 22 · 2015: 18 · 2014: 16 · 2013: 15 · 2012: 10
- FWCI
- 5.72
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Development (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Jerry M. Lewis, M.D. Mental Health Research Foundation
- National Heart, Lung, and Blood Institute (HL094857, R01HL094857)
- National Human Genome Research Institute (U01HG006398, HG006398)
- National Institute of Diabetes and Digestive and Kidney Diseases (DK 55743, R01DK055743, DK087377, RC1DK087377)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Keywords
- HNF4α, hepatic progenitor cells, hepatocyte differentiation, human embryonic stem cells, induced pluripotent stem cells, nuclear receptors, transcription factors, gene expression profiling, shRNA knockdown, liver development
- MeSH terms
- Animals, Cell Differentiation, Humans, Liver, Lentivirus, Gene Expression Regulation, Developmental, Cell Lineage, Hepatocytes, RNA, Small Interfering, Pluripotent Stem Cells, Cell Proliferation, Mice, Hepatocyte Nuclear Factor 4
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review