Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

PLINK: a tool set for whole-genome association and population-based linkage analyses.

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Ancient Admixture in Human History

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Evolution, consequences and future of plant and animal domestication

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Signatures of Selection in Composite Vrindavani Cattle of India

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The genome-wide structure of two economically important indigenous Sicilian cattle breeds1

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Genome-Wide SNP Discovery in Indigenous Cattle Breeds of South Africa

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Genome-wide scan reveals genetic divergence and diverse adaptive selection in Chinese local cattle

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Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression

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Evidence of Bos javanicus x Bos indicus hybridization and major QTLs for birth weight in Indonesian Peranakan Ongole cattle

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Combining Landscape Genomics and Ecological Modelling to Investigate Local Adaptation of Indigenous Ugandan Cattle to East Coast Fever

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Revelation of genomic breed composition in a crossbred cattle of India with the help of Bovine50K BeadChip

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A Genetic Investigation of Island Jersey Cattle, the Foundation of the Jersey Breed: Comparing Population Structure and Selection to Guernsey, Holstein, and United States Jersey Cattle

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Conservation Genomic Analysis of the Croatian Indigenous Black Slavonian and Turopolje Pig Breeds

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Genetic diversity in South African Nguni cattle ecotypes based on microsatellite markers

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Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia

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Crossbreeding effects on growth and efficiency in beef cow–calf systems: evaluation of Angus, Caracu, Hereford and Nelore breed direct, maternal and heterosis effects

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The Neolithic and ‘Pastoralism’ Along the Nile: A Dissenting View

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Accounting for population structure and data quality in demographic inference with linkage disequilibrium methods

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Genome‐wide assessment of diversity and differentiation between original and modern Brown cattle populations

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The Neolithic Revolution, Animal Domestication, and Early Forms of Animal Agriculture

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Refining the genetic structure and relationships of European cattle breeds through meta-analysis of worldwide genomic SNP data, focusing on Italian cattle

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Assessing the genetic background and genomic relatedness of red cattle populations originating from Northern Europe

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Environmental versus geographical effects on genomic variation in wild soybean (Glycine soja) across its native range in northeast Asia

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Low levels of taurine introgression in the current Brazilian Nelore and Gir indicine cattle populations

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Conservation of a domestic metapopulation structured into related and partly admixed strains

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Origins and global context of Brucella abortus in Italy

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SNP panels for the estimation of dairy breed proportion and parentage assignment in African crossbred dairy cattle

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Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids

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Adaptive traits of indigenous cattle breeds: The Mediterranean Baladi as a case study

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Genomic analysis of indigenous goats in Southwest Asia reveals evidence of ancient adaptive introgression related to desert climate

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A genome-wide assessment of genetic diversity and population structure of Korean native cattle breeds

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Evaluation of Bovine High-Density SNP Genotyping Array in Indigenous Dairy Cattle Breeds

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Comparative analysis of five different methods to design a breed-specific SNP panel for cattle

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Fifteen Shades of Grey: Combined Analysis of Genome-Wide SNP Data in Steppe and Mediterranean Grey Cattle Sheds New Light on the Molecular Basis of Coat Color

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Genetic Diversity of Historical and Modern Populations of Russian Cattle Breeds Revealed by Microsatellite Analysis

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Researching on the fine structure and admixture of the worldwide chicken population reveal connections between populations and important events in breeding history

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Genomic data as the “hitchhiker's guide” to cattle adaptation: tracking the milestones of past selection in the bovine genome

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Eastern Mediterranean Mobility in the Bronze and Early Iron Ages: Inferences from Ancient DNA of Pigs and Cattle

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Analysis of genome and methylation changes in Chinese indigenous chickens over time provides insight into species conservation

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Genomic diversity and population structure of the indigenous Greek and Cypriot cattle populations

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Recovery of Native Genetic Background in Admixed Populations Using Haplotypes, Phenotypes, and Pedigree Information – Using Cika Cattle as a Case Breed

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Uniparental genetic systems: a male and a female perspective in the domestic cattle origin and evolution

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Genetic structure and admixture in sheep from terminal breeds in the United States

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Analysis of whole-genome re-sequencing data of ducks reveals a diverse demographic history and extensive gene flow between Southeast/South Asian and Chinese populations

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Global genomic diversity and conservation priorities for domestic animals are associated with the economies of their regions of origin

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Characterization of recombination features and the genetic basis in multiple cattle breeds

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On species delimitation, hybridization and population structure of cassava whitefly in Africa

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Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

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On the origin and diversification of Podolian cattle breeds: testing scenarios of European colonization using genome-wide SNP data

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Direct and maternal breed additive and heterosis effects on growth traits of beef cattle raised in southern Brazil1

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PRLH and SOD 1 gene variations associated with heat tolerance in Chinese cattle

Zeng, L., Chen, N., Ning, Q., Yao, Y., Chen, H., Dang, R., Zhang, H., & Lei, C. (2018) · Animal Genetics · doi:10.1111/age.12702 · Cited by 29

ANIMAL GENETIC RESOURCES: DEVELOPING THE RESEARCH OF ALLELE POOL OF RUSSIAN CATTLE BREEDS – MINIREVIEW

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Large mammal declines and the incipient loss of mammal-bird mutualisms in an African savanna ecosystem

Diplock, N., Johnston, K., Mellon, A., Mitchell, L. R., Moore, M., Schneider, D., Taylor, A. P., Whitney, J., Zegar, K., Kioko, J., et al. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202536 · Cited by 30

A genetically unique Chinese cattle population shows evidence of common ancestry with wild species when analysed with a reduced ascertainment bias SNP panel

Barbato, M., Reichel, M. P., Passamonti, M. M., Low, W. Y., Colli, L., Tearle, R. G., Williams, J. L., & Ajmone‐Marsan, P. (2020) · PLoS ONE · doi:10.1371/journal.pone.0231162 · Cited by 27

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance

Paguem, A., Abanda, B., Achukwi, M. D., Baskaran, P., Czemmel, S., Renz, A., & Eisenbarth, A. (2020) · BMC Genetics · doi:10.1186/s12863-020-00869-9 · Cited by 28

Climate, clothing, and agriculture in prehistory linking evidence, causes, and effects

Gilligan, I. (2019) · Cited by 27

Population structure and ancestry of Qinchuan cattle

Chen, N., Huang, J., Zulfiqar, A., Li, R., Xi, Y., Zhang, M., Dang, R., Lan, X., Chen, H., Ma, Y., et al. (2018) · Animal Genetics · doi:10.1111/age.12658 · Cited by 28

Genetics of randomly bred cats support the cradle of cat domestication being in the Near East

Nilson, S. M., Gandolfi, B., Grahn, R. A., Kurushima, J. D., Lipinski, M. J., Randi, E., Waly, N. E., Driscoll, C. A., Escobar, H. M., Schuster, R. K., et al. (2022) · Heredity · doi:10.1038/s41437-022-00568-4 · Cited by 26

Genome-wide association study for carcass weight in pasture-finished beef cattle in Hawai’i

Adhikari, M., Kantar, M. B., Longman, R. J., Lee, C. N., Oshiro, M. A., Caires, K. C., & He, Y. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1168150 · Cited by 27

Local and global patterns of admixture and population structure in Iranian native cattle

Karimi, K., Strucken, E. M., Moghaddar, N., Ferdosi, M., Esmailizadeh, A., & Gondro, C. (2016) · BMC Genetics · doi:10.1186/s12863-016-0416-z · Cited by 27

Genetic Analysis of Thai Cattle Reveals a Southeast Asian Indicine Ancestry

Wangkumhang, P., Wilantho, A., Shaw, P. J., Flori, L., Moazami-Goudarzi, K., Gautier, M., Duangjinda, M., Assawamakin, A., & Tongsima, S. (2015) · PeerJ · doi:10.7717/peerj.1318 · Cited by 26

Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits

Taye, M., Lee, W., Caetano-Anolles, K., Dessie, T., Cho, S., Jong Oh, S., Lee, H.-K., & Kim, H. (2018) · Cogent Food & Agriculture · doi:10.1080/23311932.2018.1552552 · Cited by 26

Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing

Vasoya, D., Law, A. S., Motta, P., Yu, M., Muwonge, A., Cook, E. A. J., Li, X., Bryson, K. J., MacCallam, A., Sitt, T., et al. (2016) · Immunogenetics · doi:10.1007/s00251-016-0945-7 · Cited by 26

Genetic diversity and population structure of a Peruvian cattle herd using SNP data

Corredor, F.-A., Figueroa, D., Estrada, R., Salazar, W., Quilcate, C., Vásquez, H. V., Gonzales, J., Maicelo, J. L., Medina, P., & Arbizu, C. I. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1073843 · Cited by 27

Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data

Nayak, S. S., Panigrahi, M., Rajawat, D., Ghildiyal, K., Sharma, A., Parida, S., Bhushan, B., Mishra, B., & Dutt, T. (2023) · Mammalian Genome · doi:10.1007/s00335-023-10021-4 · Cited by 27

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

da Fonseca, R. R., Ureña, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L., & Ginja, C. (2019) · BMC Genomics · doi:10.1186/s12864-019-5685-2 · Cited by 26

Genomic regions underlying positive selection in local, Alpine cattle breeds

Signer‐Hasler, H., Casanova, L., Barenco, A., Maitre, B., Bagnato, A., Vevey, M., Berger, B., Simčić, M., Boichon, D., Capitan, A., et al. (2023) · Animal Genetics · doi:10.1111/age.13295 · Cited by 27

Unraveling the Genetic Diversity and Population Structure of Bangladeshi Indigenous Cattle Populations Using 50K SNP Markers

Bhuiyan, M. S. A., Lee, S.-H., Hossain, S. M. J., Deb, G. K., Afroz, M. F., Lee, S., & Bhuiyan, A. K. F. H. (2021) · Animals · doi:10.3390/ani11082381 · Cited by 28

Iron age genomic data from Althiburos – Tunisia renew the debate on the origins of African taurine cattle

Ginja, C., Guimarães, S. M. F., da Fonseca, R. R., Rasteiro, R., Rodríguez-Varela, R., Simões, L. G., Sarmento, C. D., Belarte, M. C., Kallala, N., Torres, J. R., et al. (2023) · iScience · doi:10.1016/j.isci.2023.107196 · Cited by 27

The evolution of contemporary livestock species: Insights from mitochondrial genome

Jain, K., Panigrahi, M., Nayak, S. S., Rajawat, D., Sharma, A., Sahoo, S. P., Bhushan, B., & Dutt, T. (2024) · Gene · doi:10.1016/j.gene.2024.148728 · Cited by 25

Climate, Clothing, and Agriculture in Prehistory

Gilligan, I. (2018) · Cambridge University Press eBooks · doi:10.1017/9781108555883 · Cited by 27

Inference of Admixture Origins in Indigenous African Cattle

Kim, K., Kim, D., Hanotte, O., Lee, C., Kim, H., & Jeong, C. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad257 · Cited by 24

Relationships among and variation within rare breeds of swine1

Roberts, K. S., & Lamberson, W. R. (2015) · Journal of Animal Science · doi:10.2527/jas.2015-9001 · Cited by 24

Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

Bro‐Jørgensen, M. H., Carøe, C., Vieira, F. G., Nestor, S., Hallström, A., Gregersen, K. M., Etting, V., Gilbert, M. T. P., & Sinding, M. S. (2018) · Journal of Archaeological Science · doi:10.1016/j.jas.2018.09.001 · Cited by 28

Applying the Metafounders Approach for Genomic Evaluation in a Multibreed Beef Cattle Population

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Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization

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