Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 188

The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.

The biology of DHX9 and its potential as a therapeutic target

Open access
Lee, Teresa, Pelletier, Jerry·2106·Oncotarget

Abstract

// Teresa Lee 1 and Jerry Pelletier 1,2,3 1 Department of Biochemistry, McGill University, Montreal, Quebec, Canada 2 Department of Oncology, McGill University, Montreal, Quebec, Canada 3 Department of Rosalind and Morris Goodman Cancer Research Center, McGill University, Montreal, Quebec, Canada Correspondence to: Jerry Pelletier, email: // Keywords : DHX9, helicase, RNA helicase A, DExD/H-box, Maleless Received : February 09, 2016 Accepted : March 16, 2016 Published : March 28, 2016 Abstract DHX9 is member of the DExD/H-box family of helicases with a “DEIH” sequence at its eponymous DExH-box motif. Initially purified from human and bovine cells and identified as a homologue of the Drosophila Maleless (MLE) protein, it is an NTP-dependent helicase consisting of a conserved helicase core domain, two double-stranded RNA-binding domains at the N-terminus, and a nuclear transport domain and a single-stranded DNA-binding RGG-box at the C-terminus. With an ability to unwind DNA and RNA duplexes, as well as more complex nucleic acid structures, DHX9 appears to play a central role in many cellular processes. Its functions include regulation of DNA replication, transcription, translation, microRNA biogenesis, RNA processing and transport, and maintenance of genomic stability. Because of its central role in gene regulation and RNA metabolism, there are growing implications for DHX9 in human diseases and their treatment. This review will provide an overview of the structure, biochemistry, and biology of DHX9, its role in cancer and other human diseases, and the possibility of targeting DHX9 in chemotherapy.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.18632/oncotarget.8446

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 9 references

Research works printed but not linked: 206

  1. Grosse, 1994, Nuclear DNA helicase II unwinds both DNA and RNA, Biochemistry, 33, 3906, 10.1021/bi00179a016 · doi:10.1021/bi00179a016
  2. Vasquez, 2010, Human DHX9 helicase unwinds triple-helical DNA structures, Biochemistry, 49, 6992, 10.1021/bi100795m · DOI
  3. Jankowsky, 2010, RNA Helicases, 1, 10.1039/9781849732215 · doi:10.1039/9781849732215
  4. Linder, 2006, The DEAD-box protein family of RNA helicases, Gene, 367, 17, 10.1016/j.gene.2005.10.019 · DOI · Paper page
  5. Wigley, 2007, Structure and mechanism of helicases and nucleic acid translocases, Annu Rev Biochem, 76, 23, 10.1146/annurev.biochem.76.052305.115300 · DOI · Paper page
  6. Jankowsky, 2010, SF1 and SF2 helicases: family matters, Curr Opin Struct Biol, 20, 313, 10.1016/j.sbi.2010.03.011 · DOI · Paper page
  7. Linder, 2004, DEAD-box proteins: the driving forces behind RNA metabolism, Nat Rev Mol Cell Biol, 5, 232, 10.1038/nrm1335 · DOI · Paper page
  8. Linder, 2006, Dead-box proteins: a family affair--active and passive players in RNP-remodeling, Nucleic Acids Res, 34, 4168, 10.1093/nar/gkl468 · DOI · Paper page
  9. Nagamine, 2012, The DEAH-box helicase RHAU is an essential gene and critical for mouse hematopoiesis, Blood, 119, 4291, 10.1182/blood-2011-08-362954 · DOI
  10. Wessel, 2011, The DEAD-box RNA helicase Vasa functions in embryonic mitotic progression in the sea urchin, Development, 138, 2217, 10.1242/dev.065052 · DOI
  11. Ji, 2015, The novel helicase helG (DHX30) is expressed during gastrulation in mice and has a structure similar to a human DExH box helicase, Stem Cells Dev, 24, 372, 10.1089/scd.2014.0077 · DOI
  12. Furuichi, 2015, Helicases and human diseases, Front Genet, 6, 39
  13. Brosh, 2013, DNA helicases involved in DNA repair and their roles in cancer, Nat Rev Cancer, 13, 542, 10.1038/nrc3560 · DOI · Paper page
  14. Fuller-Pace, 2013, DEAD box RNA helicase functions in cancer, RNA Biol, 10, 121, 10.4161/rna.23312 · DOI
  15. Hur, 2015, Helicases in Antiviral Immunity: Dual Properties as Sensors and Effectors, Trends Biochem Sci, 40, 576, 10.1016/j.tibs.2015.08.001 · DOI
  16. Hurwitz, 1993, Human RNA helicase A is homologous to the maleless protein of Drosophila, J Biol Chem, 268, 16822, 10.1016/S0021-9258(19)85490-X · DOI
  17. Hurwitz, 1992, A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to 5′ direction, J Biol Chem, 267, 4398, 10.1016/S0021-9258(18)42849-9 · DOI
  18. Grosse, 1995, Molecular cloning of the gene encoding nuclear DNA helicase II. A bovine homologue of human RNA helicase A and Drosophila Mle protein, J Biol Chem, 270, 16422, 10.1074/jbc.270.27.16422 · doi:10.1074/jbc.270.27.16422
  19. Oishi, 1975, Maleless a recessive autosomal mutant of Drosophila melanogaster that specifically kills male zygotes, Genetics, 81, 135, 10.1093/genetics/81.1.135 · doi:10.1093/genetics/81.1.135
  20. Baker, 1991, The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila, Cell, 66, 935, 10.1016/0092-8674(91)90439-6 · DOI
  21. Hurwitz, 1998, Molecular analysis of the cDNA and genomic DNA encoding mouse RNA helicase A, Genomics, 47, 365, 10.1006/geno.1997.5139 · doi:10.1006/geno.1997.5139
  22. Kelly, 2005, RNA helicase A is important for germline transcriptional control proliferation and meiosis in C. elegans, Mech Dev, 122, 707, 10.1016/j.mod.2004.12.002 · DOI
  23. Lindsey, 1997, A novel nucleic acid helicase gene identified by promoter trapping in Arabidopsis, Plant J, 11, 1307, 10.1046/j.1365-313X.1997.11061307.x · doi:10.1046/j.1365-313x.1997.11061307.x
  24. Hurwitz, 1999, The human RNA helicase A (DDX9) gene maps to the prostate cancer susceptibility locus at chromosome band 1q25 and its pseudogene (DDX9P) to 13q22 respectively, Somat Cell Mol Genet, 25, 33, 10.1023/B:SCAM.0000007138.44216.3a · doi:10.1023/b:scam.0000007138.44216.3a
  25. Grosse, 1997, Domain structure of human nuclear DNA helicase II (RNA helicase A), J Biol Chem, 272, 11487, 10.1074/jbc.272.17.11487 · DOI
  26. Kleiman, 2014, Helicase associated 2 domain is essential for helicase activity of RNA helicase A, Biochim Biophys Acta, 1844, 1757, 10.1016/j.bbapap.2014.07.001 · DOI
  27. Kleiman, 2014, Role of the OB-fold of RNA helicase A in the synthesis of HIV-1 RNA, Biochim Biophys Acta, 1839, 1069, 10.1016/j.bbagrm.2014.08.008 · DOI
  28. Nakajima, 2006, The nuclear import of RNA helicase A is mediated by importin-alpha3, Biochem Biophys Res Commun, 340, 125, 10.1016/j.bbrc.2005.11.161 · DOI
  29. Grosse, 1999, Nucleolar localization of murine nuclear DNA helicase II (RNA helicase A), J Cell Sci, 112, 2693, 10.1242/jcs.112.16.2693 · doi:10.1242/jcs.112.16.2693
  30. Schuler, 2010, Crystal structure of human RNA helicase A (DHX9): structural basis for unselective nucleotide base binding in a DEAD-box variant protein, J Mol Biol, 400, 768, 10.1016/j.jmb.2010.05.046 · DOI
  31. Yuan, 2013, Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9), Nucleic Acids Res, 41, 3457, 10.1093/nar/gkt042 · DOI
  32. Muto, 2012, Solution structures of the double-stranded RNA-binding domains from RNA helicase A, Proteins, 80, 1699, 10.1002/prot.24059 · DOI
  33. Muto, 2013, (1)H (13)C and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A, Biomol NMR Assign, 7, 69, 10.1007/s12104-012-9380-3 · doi:10.1007/s12104-012-9380-3
  34. Hurwitz, 1997, The NTPase/helicase activities of Drosophila maleless an essential factor in dosage compensation, EMBO J, 16, 2671, 10.1093/emboj/16.10.2671 · doi:10.1093/emboj/16.10.2671
  35. Grosse, 2010, WRN helicase unwinds Okazaki fragment-like hybrids in a reaction stimulated by the human DHX9 helicase, Nucleic Acids Res, 38, 4722, 10.1093/nar/gkq240 · DOI
  36. Pelletier, 2015, Establishment of a Primary Screening Assay for the DHX9 Helicase, Comb Chem High Throughput Screen, 18, 855, 10.2174/1386207318666151019093433 · doi:10.2174/1386207318666151019093433
  37. Grosse, 2011, Human DHX9 helicase preferentially unwinds RNA-containing displacement loops (R-loops) and G-quadruplexes, DNA Repair (Amst), 10, 654, 10.1016/j.dnarep.2011.04.013 · DOI
  38. Kogoma, 1996, Recombination by replication, Cell, 85, 625, 10.1016/S0092-8674(00)81229-5 · DOI
  39. Kowalczykowski, 2000, Initiation of genetic recombination and recombination-dependent replication, Trends Biochem Sci, 25, 156, 10.1016/S0968-0004(00)01569-3 · DOI · Paper page
  40. Haber, 1999, DNA recombination: the replication connection, Trends Biochem Sci, 24, 271, 10.1016/S0968-0004(99)01413-9 · DOI · Paper page
  41. Baaklini, 2003, The problem of hypernegative supercoiling and R-loop formation in transcription, Front Biosci, 8, d210, 10.2741/970 · DOI
  42. Li, 2011, R-loop-mediated genomic instability is caused by impairment of replication fork progression, Genes Dev, 25, 2041, 10.1101/gad.17010011 · DOI · Paper page
  43. Helleday, 2009, Transcription-associated recombination in eukaryotes: link between transcription replication and recombination, Mutagenesis, 24, 203, 10.1093/mutage/gen072 · DOI
  44. Aguilera, 2015, R loops: new modulators of genome dynamics and function, Nat Rev Genet, 16, 583, 10.1038/nrg3961 · DOI · Paper page
  45. Mirkin, 2008, Discovery of alternative DNA structures: a heroic decade (1979-1989), Front Biosci, 13, 1064, 10.2741/2744 · DOI
  46. Vasquez, 2010, Non-B DNA structure-induced genetic instability and evolution, Cell Mol Life Sci, 67, 43, 10.1007/s00018-009-0131-2 · DOI · Paper page
  47. Wells, 2004, Non-B DNA conformations genomic rearrangements and human disease, J Biol Chem, 279, 47411, 10.1074/jbc.R400028200 · DOI · Paper page
  48. Stahl, 1991, Simian-virus-40 large-T-antigen-catalyzed DNA and RNA unwinding reactions, Eur J Biochem, 195, 49, 10.1111/j.1432-1033.1991.tb15674.x · doi:10.1111/j.1432-1033.1991.tb15674.x
  49. Seidman, 2001, Unwinding of a DNA triple helix by the Werner and Bloom syndrome helicases, J Biol Chem, 276, 3024, 10.1074/jbc.M006784200 · DOI
  50. Hickson, 2006, Mobile D-loops are a preferred substrate for the Bloom's syndrome helicase, Nucleic Acids Res, 34, 2269, 10.1093/nar/gkl258 · DOI
  51. Wang, 2009, The Werner syndrome helicase/exonuclease processes mobile D-loops through branch migration and degradation, PLoS One, 4, e4825, 10.1371/journal.pone.0004825 · DOI
  52. Vindigni, 2008, The Human RecQ helicases BLM and RECQ1 display distinct DNA substrate specificities, J Biol Chem, 283, 17766, 10.1074/jbc.M709749200 · DOI
  53. Hickson, 2009, Dissolution of double Holliday junctions by the concerted action of BLM and topoisomerase IIIalpha, Methods Mol Biol, 582, 91, 10.1007/978-1-60761-340-4_8 · DOI
  54. Orren, 2011, The Werner and Bloom syndrome proteins help resolve replication blockage by converting (regressed) holliday junctions to functional replication forks, Biochemistry, 50, 6774, 10.1021/bi2001054 · DOI
  55. Maizels, 1998, The Bloom's syndrome helicase unwinds G4 DNA, J Biol Chem, 273, 27587, 10.1074/jbc.273.42.27587 · DOI · Paper page
  56. Hickson, 2001, The Bloom's and Werner's syndrome proteins are DNA structure-specific helicases, Nucleic Acids Res, 29, 2843, 10.1093/nar/29.13.2843 · DOI · Paper page
  57. McKenna, 2012, The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boundary, Nucleic Acids Res, 40, 4110, 10.1093/nar/gkr1306 · DOI
  58. Vaughn, 2008, G4 resolvase 1 binds both DNA and RNA tetramolecular quadruplex with high affinity and is the major source of tetramolecular quadruplex G4-DNA and G4-RNA resolving activity in HeLa cell lysates, J Biol Chem, 283, 34626, 10.1074/jbc.M806277200 · DOI
  59. Nakajima, 2001, Dual roles of RNA helicase A in CREB-dependent transcription, Mol Cell Biol, 21, 4460, 10.1128/MCB.21.14.4460-4469.2001 · DOI
  60. Nishikura, 1995, Mutagenic analysis of double-stranded RNA adenosine deaminase a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts, J Biol Chem, 270, 17098, 10.1074/jbc.270.29.17098 · DOI
  61. Sen, 1992, Identification of the double-stranded RNA-binding domain of the human interferon-inducible protein kinase, J Biol Chem, 267, 7671, 10.1016/S0021-9258(18)42567-7 · DOI
  62. Grosse, 1999, Pre-mRNA and mRNA binding of human nuclear DNA helicase II (RNA helicase A), J Cell Sci, 112, 1055, 10.1242/jcs.112.7.1055 · DOI
  63. Newport, 1991, Assembly/disassembly of the nuclear envelope membrane: cell cycle-dependent binding of nuclear membrane vesicles to chromatin in vitro, Cell, 65, 209, 10.1016/0092-8674(91)90155-R · doi:10.1016/0092-8674(91)90155-r
  64. Wong-Staal, 1999, The carboxyl terminus of RNA helicase A contains a bidirectional nuclear transport domain, Mol Cell Biol, 19, 3540, 10.1128/MCB.19.5.3540 · DOI
  65. David, 2004, Arginine methylation of RNA helicase a determines its subcellular localization, J Biol Chem, 279, 22795, 10.1074/jbc.C300512200 · DOI
  66. Schlisio, 2014, RNA helicase A is a downstream mediator of KIF1Bbeta tumor-suppressor function in neuroblastoma, Cancer Discov, 4, 434, 10.1158/2159-8290.CD-13-0362 · DOI
  67. Horinouchi, 1999, Leptomycin B inactivates CRM1/exportin 1 by covalent modification at a cysteine residue in the central conserved region, Proc Natl Acad Sci U S A, 96, 9112, 10.1073/pnas.96.16.9112 · DOI · Paper page
  68. Wang, 1997, Leptomycin B is an inhibitor of nuclear export: inhibition of nucleo-cytoplasmic translocation of the human immunodeficiency virus type 1 (HIV-1) Rev protein and Rev-dependent mRNA, Chem Biol, 4, 139, 10.1016/S1074-5521(97)90257-X · DOI · Paper page
  69. Nakajima, 2005, Relevance of nuclear localization and functions of RNA helicase A, Int J Mol Med, 15, 555
  70. Hozak, 2002, The localization of nuclear DNA helicase II in different nuclear compartments is linked to transcription, Exp Cell Res, 279, 260, 10.1006/excr.2002.5617 · DOI
  71. Tang, 2007, Molecular determinants of nucleolar translocation of RNA helicase A, Exp Cell Res, 313, 3743, 10.1016/j.yexcr.2007.07.037 · doi:10.1016/j.yexcr.2007.07.037
  72. Grosse, 2004, Nuclear DNA helicase II (RNA helicase A) binds to an F-actin containing shell that surrounds the nucleolus, Exp Cell Res, 293, 248, 10.1016/j.yexcr.2003.10.018 · doi:10.1016/j.yexcr.2003.10.018
  73. Odeberg, 2015, Proteomics Tissue-based map of the human proteome, Science, 347, 1260419, 10.1126/science.1260419 · DOI · Paper page
  74. Ponten, 2010, Towards a knowledge-based Human Protein Atlas, Nat Biotechnol, 28, 1248, 10.1038/nbt1210-1248 · DOI · Paper page
  75. Knepper, 2013, Proteome-wide measurement of protein half-lives and translation rates in vasopressin-sensitive collecting duct cells, J Am Soc Nephrol, 24, 1793, 10.1681/ASN.2013030279 · DOI
  76. Pelletier, 2014, Suppression of the DHX9 helicase induces premature senescence in human diploid fibroblasts in a p53-dependent manner, J Biol Chem, 289, 22798, 10.1074/jbc.M114.568535 · DOI
  77. Pelletier, 2016, Tumor Cell Survival Dependence on the DHX9 DExH-Box Helicase, Oncogene, 10.1038/onc.2016.52 · DOI
  78. Hurwitz, 1998, RNA helicase A is essential for normal gastrulation, Proc Natl Acad Sci U S A, 95, 13709, 10.1073/pnas.95.23.13709 · DOI
  79. Smidt, 2013, LMX1B is part of a transcriptional complex with PSPC1 and PSF, PLoS One, 8, e53122, 10.1371/journal.pone.0053122 · DOI
  80. Lahesmaa, 2012, RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation, Stem Cells, 30, 452, 10.1002/stem.1013 · DOI
  81. Tsurimoto, 2002, A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein, J Biol Chem, 277, 40362, 10.1074/jbc.M206194200 · DOI
  82. Lee, 1997, Identification of DNA replication and cell cycle proteins that interact with PCNA, Nucleic Acids Res, 25, 5041, 10.1093/nar/25.24.5041 · DOI
  83. Lee, 2003, RNA helicase A interacts with dsDNA and topoisomerase IIalpha, Nucleic Acids Res, 31, 2253, 10.1093/nar/gkg328 · DOI
  84. Grosse, 2004, DNA-dependent protein kinase (DNA-PK) phosphorylates nuclear DNA helicase II/RNA helicase A and hnRNP proteins in an RNA-dependent manner, Nucleic Acids Res, 32, 1, 10.1093/nar/gkg933 · DOI
  85. Zannis-Hadjopoulos, 2008, Ku is involved in cell growth DNA replication and G1-S transition, J Cell Sci, 121, 590, 10.1242/jcs.021352 · DOI
  86. Zhang, 2005, Nuclear DNA helicase II (RNA helicase A) interacts with Werner syndrome helicase and stimulates its exonuclease activity, J Biol Chem, 280, 31303, 10.1074/jbc.M503882200 · DOI
  87. Bambara, 2013, Okazaki fragment metabolism, Cold Spring Harb Perspect Biol, 5
  88. Bohr, 2000, Ku complex interacts with and stimulates the Werner protein, Genes Dev, 14, 907, 10.1101/gad.14.8.907 · DOI · Paper page
  89. Cox, 2003, Characterisation of the interaction between WRN the helicase/exonuclease defective in progeroid Werner's syndrome and an essential replication factor PCNA, Mech Ageing Dev, 124, 167, 10.1016/S0047-6374(02)00131-8 · DOI
  90. Vasquez, 2013, DHX9 helicase is involved in preventing genomic instability induced by alternatively structured DNA in human cells, Nucleic Acids Res, 41, 10345, 10.1093/nar/gkt804 · DOI
  91. Lipps, 2015, G-quadruplexes and their regulatory roles in biology, Nucleic Acids Res, 43, 8627, 10.1093/nar/gkv862 · DOI · Paper page
  92. Mechali, 2012, Genome-scale identification of active DNA replication origins, Methods, 57, 158, 10.1016/j.ymeth.2012.06.015 · DOI
  93. Mechali, 2011, Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features, Genome Res, 21, 1438, 10.1101/gr.121830.111 · DOI · Paper page
  94. Lemaitre, 2012, Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs, Nat Struct Mol Biol, 19, 837, 10.1038/nsmb.2339 · DOI · Paper page
  95. Sale, 2010, Epigenetic instability due to defective replication of structured DNA, Mol Cell, 40, 703, 10.1016/j.molcel.2010.11.009 · DOI · Paper page
  96. Mirkin, 2013, DNA replication: driving past four-stranded snags, Nature, 497, 449, 10.1038/nature12244 · DOI
  97. Zhang, 2005, Actinomycin D induces histone gamma-H2AX foci and complex formation of gamma-H2AX with Ku70 and nuclear DNA helicase II, J Biol Chem, 280, 9586, 10.1074/jbc.M411444200 · DOI
  98. Sun, 2010, Functional proteomic analysis of promyelocytic leukaemia nuclear bodies in irradiation-induced MCF-7 cells, J Biochem, 148, 659, 10.1093/jb/mvq105 · DOI
  99. Hozak, 2002, Nuclear DNA helicase II is recruited to IFN-alpha-activated transcription sites at PML nuclear bodies, J Cell Biol, 158, 463, 10.1083/jcb.200202035 · doi:10.1083/jcb.200202035
  100. Yasui, 2008, A polycomb group protein PHF1 is involved in the response to DNA double-strand breaks in human cell, Nucleic Acids Res, 36, 2939, 10.1093/nar/gkn146 · DOI
  101. Lucchesi, 1980, Control of X chromosome transcription by the maleless gene in Drosophila, Nature, 285, 573, 10.1038/285573a0 · doi:10.1038/285573a0
  102. Kuroda, 1996, RNA-dependent association of the Drosophila maleless protein with the male X chromosome, Genes Cells, 1, 325, 10.1046/j.1365-2443.1996.26027.x · doi:10.1046/j.1365-2443.1996.26027.x
  103. Kuroda, 2000, Ordered assembly of roX RNAs into MSL complexes on the dosage-compensated X chromosome in Drosophila, Curr Biol, 10, 136, 10.1016/S0960-9822(00)00311-0 · doi:10.1016/s0960-9822(00)00311-0
  104. Montminy, 1989, Cyclic AMP stimulates somatostatin gene transcription by phosphorylation of CREB at serine 133, Cell, 59, 675, 10.1016/0092-8674(89)90013-5 · DOI · Paper page
  105. Montminy, 1997, RNA helicase A mediates association of CBP with RNA polymerase II, Cell, 90, 1107, 10.1016/S0092-8674(00)80376-1 · DOI · Paper page
  106. Nakajima, 2003, Aromatic residues are required for RNA helicase A mediated transactivation, Int J Mol Med, 12, 175
  107. Nakajima, 2008, MLE activates transcription via the minimal transactivation domain in Drosophila, Int J Mol Med, 21, 469
  108. Parvin, 2003, The multiple nuclear functions of BRCA1: transcription ubiquitination and DNA repair, Curr Opin Cell Biol, 15, 345, 10.1016/S0955-0674(03)00042-5 · DOI
  109. Parvin, 1998, BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase A, Nat Genet, 19, 254, 10.1038/930 · DOI · Paper page
  110. de Lanerolle, 2004, Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II, Nat Cell Biol, 6, 1094, 10.1038/ncb1182 · DOI · Paper page
  111. Zeng, 2009, RNA helicase A acts as a bridging factor linking nuclear beta-actin with RNA polymerase II, Biochem J, 420, 421, 10.1042/BJ20090402 · DOI
  112. Okamoto, 2004, RNA helicase A interacts with nuclear factor kappaB p65 and functions as a transcriptional coactivator, Eur J Biochem, 271, 3741, 10.1111/j.1432-1033.2004.04314.x · DOI
  113. Collins, 1997, CREB-binding protein/p300 are transcriptional coactivators of p65, Proc Natl Acad Sci U S A, 94, 2927, 10.1073/pnas.94.7.2927 · DOI · Paper page
  114. Kato, 2002, Ligand-selective potentiation of rat mineralocorticoid receptor activation function 1 by a CBP-containing histone acetyltransferase complex, Mol Cell Biol, 22, 3698, 10.1128/MCB.22.11.3698-3706.2002 · DOI
  115. Nakajima, 2003, Antithetic effects of MBD2a on gene regulation, Mol Cell Biol, 23, 2645, 10.1128/MCB.23.8.2645-2657.2003 · DOI
  116. Lee, 2004, A functional interaction between RHA and Ubc9 an E2-like enzyme specific for Sumo-1, J Mol Biol, 341, 15, 10.1016/j.jmb.2004.06.004 · DOI
  117. Haneji, 2007, The transcriptional factor Osterix directly interacts with RNA helicase A, Biochem Biophys Res Commun, 355, 347, 10.1016/j.bbrc.2007.01.150 · doi:10.1016/j.bbrc.2007.01.150
  118. Mathews, 2003, Selective regulation of gene expression by nuclear factor 110 a member of the NF90 family of double-stranded RNA-binding proteins, J Mol Biol, 332, 85, 10.1016/S0022-2836(03)00885-4 · DOI
  119. Aruga, 2007, ZIC2-dependent transcriptional regulation is mediated by DNA-dependent protein kinase poly(ADP-ribose) polymerase and RNA helicase A, J Biol Chem, 282, 9983, 10.1074/jbc.M610821200 · DOI
  120. Baylin, 2001, Sequence-specific DNA binding activity of RNA helicase A to the p16INK4a promoter, J Biol Chem, 276, 1634, 10.1074/jbc.M004481200 · DOI
  121. Safa, 2004, RNA helicase A in the MEF1 transcription factor complex up-regulates the MDR1 gene in multidrug-resistant cancer cells, J Biol Chem, 279, 17134, 10.1074/jbc.M311057200 · DOI
  122. Hung, 2001, Nuclear localization of EGF receptor and its potential new role as a transcription factor, Nat Cell Biol, 3, 802, 10.1038/ncb0901-802 · DOI · Paper page
  123. Hung, 2010, RNA helicase A is a DNA-binding partner for EGFR-mediated transcriptional activation in the nucleus, Proc Natl Acad Sci U S A, 107, 16125, 10.1073/pnas.1000743107 · DOI
  124. Haber, 2013, The IGF2 intronic miR-483 selectively enhances transcription from IGF2 fetal promoters and enhances tumorigenesis, Genes Dev, 27, 2543, 10.1101/gad.224170.113 · DOI
  125. Williams, 2009, An antiviral response directed by PKR phosphorylation of the RNA helicase A, PLoS Pathog, 5, e1000311, 10.1371/journal.ppat.1000311 · DOI
  126. Nakajima, 2001, A Role of RNA Helicase A in cis-Acting Transactivation Response Element-mediated Transcriptional Regulation of Human Immunodeficiency Virus Type 1, J Biol Chem, 276, 5445, 10.1074/jbc.M006892200 · DOI
  127. Kwon, 2006, TonEBP is inhibited by RNA helicase A via interaction involving the E'F loop, Biochem J, 393, 411, 10.1042/BJ20051082 · DOI
  128. Sonenberg, 1993, Remarks on the mechanism of ribosome binding to eukaryotic mRNAs, Gene Expr, 3, 317
  129. Sonenberg, 1994, Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation, EMBO J, 13, 1205, 10.1002/j.1460-2075.1994.tb06370.x · DOI · Paper page
  130. Sonenberg, 1990, Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F, Mol Cell Biol, 10, 1134, 10.1128/MCB.10.3.1134 · DOI · Paper page
  131. Boris-Lawrie, 1999, The 5′ RNA terminus of spleen necrosis virus contains a novel posttranscriptional control element that facilitates human immunodeficiency virus Rev/RRE-independent Gag production, J Virol, 73, 4847, 10.1128/JVI.73.6.4847-4855.1999 · DOI
  132. Boris-Lawrie, 2003, Primary sequence and secondary structure motifs in spleen necrosis virus RU5 confer translational utilization of unspliced human immunodeficiency virus type 1 reporter RNA, J Virol, 77, 11973, 10.1128/JVI.77.22.11973-11984.2003 · DOI
  133. Boris-Lawrie, 2006, RNA helicase A is necessary for translation of selected messenger RNAs, Nat Struct Mol Biol, 13, 509, 10.1038/nsmb1092 · DOI · Paper page
  134. Boris-Lawrie, 2011, Features of double-stranded RNA-binding domains of RNA helicase A are necessary for selective recognition and translation of complex mRNAs, J Biol Chem, 286, 5328, 10.1074/jbc.M110.176339 · DOI
  135. Boris-Lawrie, 2010, RNA helicase A modulates translation of HIV-1 and infectivity of progeny virions, Nucleic Acids Res, 38, 1686, 10.1093/nar/gkp1075 · DOI
  136. Stefanovic, 2010, Binding of LARP6 to the conserved 5′ stem-loop regulates translation of mRNAs encoding type I collagen, J Mol Biol, 395, 309, 10.1016/j.jmb.2009.11.020 · DOI
  137. Stefanovic, 2012, A novel role of RNA helicase A in regulation of translation of type I collagen mRNAs, RNA, 18, 321, 10.1261/rna.030288.111 · DOI
  138. Hammond, 2008, Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing, RNA, 14, 1539, 10.1261/rna.1155108 · DOI · Paper page
  139. Huang, 2009, Lin28 modulates cell growth and associates with a subset of cell cycle regulator mRNAs in mouse embryonic stem cells, RNA, 15, 357, 10.1261/rna.1368009 · DOI · Paper page
  140. Huang, 2010, Lin28-mediated post-transcriptional regulation of Oct4 expression in human embryonic stem cells, Nucleic Acids Res, 38, 1240, 10.1093/nar/gkp1071 · DOI
  141. Huang, 2009, Histone H2a mRNA interacts with Lin28 and contains a Lin28-dependent posttranscriptional regulatory element, Nucleic Acids Res, 37, 4256, 10.1093/nar/gkp372 · DOI
  142. Harel-Bellan, 2007, Lin-28 binds IGF-2 mRNA and participates in skeletal myogenesis by increasing translation efficiency, Genes Dev, 21, 1125, 10.1101/gad.415007 · DOI · Paper page
  143. Huang, 2011, Evidence that Lin28 stimulates translation by recruiting RNA helicase A to polysomes, Nucleic Acids Res, 39, 3724, 10.1093/nar/gkq1350 · DOI
  144. Das, 2009, p53 and little brother p53/47: linking IRES activities with protein functions, Oncogene, 28, 2766, 10.1038/onc.2009.138 · DOI
  145. Yang, 2007, p53 translational control: a new facet of p53 regulation and its implication for tumorigenesis and cancer therapeutics, Gene, 395, 1, 10.1016/j.gene.2007.01.029 · DOI
  146. Kastan, 1998, The complexity of p53 modulation: emerging patterns from divergent signals, Genes Dev, 12, 2973, 10.1101/gad.12.19.2973 · DOI · Paper page
  147. Das, 2006, Two internal ribosome entry sites mediate the translation of p53 isoforms, EMBO Rep, 7, 404, 10.1038/sj.embor.7400623 · DOI
  148. Zhang, 2006, The identification of an internal ribosomal entry site in the 5′-untranslated region of p53 mRNA provides a novel mechanism for the regulation of its translation following DNA damage, Oncogene, 25, 4613, 10.1038/sj.onc.1209483 · DOI
  149. Yang, 2015, Translational Control Protein 80 Stimulates IRES-Mediated Translation of p53 mRNA in Response to DNA Damage, Biomed Res Int, 2015, 708158
  150. Yang, 2015, Deregulation of Internal Ribosome Entry Site-Mediated p53 Translation in Cancer Cells with Defective p53 Response to DNA Damage, Mol Cell Biol, 35, 4006, 10.1128/MCB.00365-15 · DOI
  151. Amano, 2012, BRCA1 regulates microRNA biogenesis via the DROSHA microprocessor complex, J Cell Biol, 197, 201, 10.1083/jcb.201110008 · DOI
  152. Rana, 2007, RNA helicase A interacts with RISC in human cells and functions in RISC loading, Mol Cell, 26, 523, 10.1016/j.molcel.2007.04.016 · DOI · Paper page
  153. Luhrmann, 2002, Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method, Proc Natl Acad Sci U S A, 99, 16719, 10.1073/pnas.262483899 · DOI · Paper page
  154. Reddy, 2011, Expanded CUG repeats Dysregulate RNA splicing by altering the stoichiometry of the muscleblind 1 complex, J Biol Chem, 286, 38427, 10.1074/jbc.M111.255224 · DOI
  155. Dreyfuss, 2001, A functional interaction between the survival motor neuron complex and RNA polymerase II, J Cell Biol, 152, 75, 10.1083/jcb.152.1.75 · DOI · Paper page
  156. Terns, 2001, Macromolecular complexes: SMN--the master assembler, Curr Biol, 11, R862, 10.1016/S0960-9822(01)00517-6 · DOI
  157. Dreyfuss, 2001, The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1, Curr Biol, 11, 1079, 10.1016/S0960-9822(01)00316-5 · DOI
  158. Ohman, 2003, Coordination of editing and splicing of glutamate receptor pre-mRNA, RNA, 9, 309, 10.1261/rna.2750803 · DOI
  159. Ganetzky, 2000, The mle(napts) RNA helicase mutation in drosophila results in a splicing catastrophe of the para Na+ channel transcript in a region of RNA editing, Neuron, 25, 139, 10.1016/S0896-6273(00)80878-8 · DOI
  160. Ganetzky, 1991, napts a mutation affecting sodium channel activity in Drosophila is an allele of mle a regulator of X chromosome transcription, Cell, 66, 949, 10.1016/0092-8674(91)90440-A · DOI
  161. Grosse, 2002, Nuclear DNA helicase II/RNA helicase A binds to filamentous actin, J Biol Chem, 277, 843, 10.1074/jbc.M109393200 · doi:10.1074/jbc.m109393200
  162. Goldman, 2003, The nucleoskeleton: lamins and actin are major players in essential nuclear functions, Curr Opin Cell Biol, 15, 358, 10.1016/S0955-0674(03)00050-4 · DOI
  163. Wong-Staal, 1997, A cellular cofactor for the constitutive transport element of type D retrovirus, Science, 276, 1412, 10.1126/science.276.5317.1412 · DOI · Paper page
  164. Wong-Staal, 2000, Specific interaction between RNA helicase A and Tap two cellular proteins that bind to the constitutive transport element of type D retrovirus, J Biol Chem, 275, 32694, 10.1074/jbc.M003933200 · DOI
  165. Wong-Staal, 2001, Mapping the functional domains of HAP95 a protein that binds RNA helicase A and activates the constitutive transport element of type D retroviruses, J Biol Chem, 276, 30694, 10.1074/jbc.M102809200 · DOI
  166. Wong-Staal, 2000, A novel shuttle protein binds to RNA helicase A and activates the retroviral constitutive transport element, J Biol Chem, 275, 21396, 10.1074/jbc.M909887199 · doi:10.1074/jbc.m909887199
  167. Krausslich, 2000, Multiple copies of the Mason-Pfizer monkey virus constitutive RNA transport element lead to enhanced HIV-1 Gag expression in a context-dependent manner, Nucleic Acids Res, 28, 901, 10.1093/nar/28.4.901 · DOI
  168. Wong-Staal, 1999, A role for RNA helicase A in post-transcriptional regulation of HIV type 1, Proc Natl Acad Sci U S A, 96, 709, 10.1073/pnas.96.2.709 · DOI
  169. Moreno, 2009, Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells, Cancer Res, 69, 709, 10.1158/0008-5472.CAN-08-3415 · DOI
  170. Moreno, 2011, SOX4 interacts with plakoglobin in a Wnt3a-dependent manner in prostate cancer cells, BMC Cell Biol, 12, 50, 10.1186/1471-2121-12-50 · doi:10.1186/1471-2121-12-50
  171. Croce, 2008, Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer, Cancer Res, 68, 6162, 10.1158/0008-5472.CAN-08-0144 · DOI · Paper page
  172. Petersen, 2004, Analysis of the RNA helicase A gene in human lung cancer, Oncol Rep, 11, 253
  173. Yang, 2014, Conserved recurrent gene mutations correlate with pathway deregulation and clinical outcomes of lung adenocarcinoma in never-smokers, BMC Med Genomics, 7, 32
  174. Salomon, 2006, Epidermal growth factor receptor (EGFR) signaling in cancer, Gene, 366, 2, 10.1016/j.gene.2005.10.018 · DOI · Paper page
  175. Ueno, 2012, Role of epidermal growth factor receptor in breast cancer, Breast Cancer Res Treat, 136, 331, 10.1007/s10549-012-2289-9 · DOI · Paper page
  176. Harris, 1987, Epidermal growth factor receptors in non-small cell lung cancer, Br J Cancer, 55, 513, 10.1038/bjc.1987.104 · DOI · Paper page
  177. Schlessinger, 1985, Amplification and overexpression of the EGF receptor gene in primary human glioblastomas, J Cell Sci Suppl, 3, 161
  178. Parvin, 2003, Overexpression of a protein fragment of RNA helicase A causes inhibition of endogenous BRCA1 function and defects in ploidy and cytokinesis in mammary epithelial cells, Oncogene, 22, 983, 10.1038/sj.onc.1206195 · DOI
  179. BRCAs, 2009, Genetic sequence variations of BRCA1-interacting genes AURKA BAP1 BARD1 and DHX9 in French Canadian families with high risk of breast cancer, J Hum Genet, 54, 152, 10.1038/jhg.2009.6 · DOI
  180. Valvassori, 2008, Apoptotic genes as potential markers of metastatic phenotype in human osteosarcoma cell lines, Int J Oncol, 32, 17
  181. Pelletier, 2013, RNAi screening uncovers Dhx9 as a modifier of ABT-737 resistance in an E?-myc/Bcl-2 mouse model, Blood, 121, 3402, 10.1182/blood-2012-06-434365 · DOI
  182. Huang, 2006, The BH3 mimetic ABT-737 targets selective Bcl-2 proteins and efficiently induces apoptosis via Bak/Bax if Mcl-1 is neutralized, Cancer Cell, 10, 389, 10.1016/j.ccr.2006.08.027 · DOI · Paper page
  183. Letai, 2010, Acquired resistance to ABT-737 in lymphoma cells that up-regulate MCL-1 and BFL-1, Blood, 115, 3304, 10.1182/blood-2009-07-233304 · DOI · Paper page
  184. Denny, 1993, The Ewing's sarcoma EWS/FLI-1 fusion gene encodes a more potent transcriptional activator and is a more powerful transforming gene than FLI-1, Mol Cell Biol, 13, 7393, 10.1128/MCB.13.12.7393 · DOI · Paper page
  185. Uren, 2006, Oncoprotein EWS-FLI1 activity is enhanced by RNA helicase A, Cancer Res, 66, 5574, 10.1158/0008-5472.CAN-05-3293 · DOI
  186. Toretsky, 2009, A small molecule blocking oncogenic protein EWS-FLI1 interaction with RNA helicase A inhibits growth of Ewing's sarcoma, Nat Med, 15, 750, 10.1038/nm.1983 · DOI · Paper page
  187. Ludwig, 2015, An Oral Formulation of YK-4-279: Preclinical Efficacy and Acquired Resistance Patterns in Ewing Sarcoma, Mol Cancer Ther, 14, 1591, 10.1158/1535-7163.MCT-14-0334 · DOI
  188. Toretsky, 2014, Pharmacokinetic modeling optimizes inhibition of the ‘undruggable' EWS-FLI1 transcription factor in Ewing Sarcoma, Oncotarget, 5, 338, 10.18632/oncotarget.1495 · DOI
  189. Liang, 2006, Association of RNA helicase a with human immunodeficiency virus type 1 particles, J Biol Chem, 281, 12625, 10.1074/jbc.M510596200 · DOI
  190. Kleiman, 2013, Roles of the linker region of RNA helicase A in HIV-1 RNA metabolism, PLoS One, 8, e78596, 10.1371/journal.pone.0078596 · DOI
  191. Zhou, 2008, Comparisons of RNAi approaches for validation of human RNA helicase A as an essential factor in hepatitis C virus replication, J Virol Methods, 154, 216, 10.1016/j.jviromet.2008.08.005 · DOI
  192. Moorman, 2015, An unbiased proteomics approach to identify human cytomegalovirus RNA-associated proteins, Virology, 481, 13, 10.1016/j.virol.2015.02.008 · DOI
  193. Mathews, 1998, Activities of adenovirus virus-associated RNAs: purification and characterization of RNA binding proteins, Proc Natl Acad Sci U S A, 95, 8514, 10.1073/pnas.95.15.8514 · doi:10.1073/pnas.95.15.8514
  194. Arankalle, 2015, Identification and characterization of cellular proteins interacting with Hepatitis E virus untranslated regions, Virus Res, 208, 98, 10.1016/j.virusres.2015.06.006 · DOI
  195. Zhou, 2012, Identification of RNA helicase A as a cellular factor that interacts with influenza A virus NS1 protein and its role in the virus life cycle, J Virol, 86, 1942, 10.1128/JVI.06362-11 · DOI
  196. McFadden, 2013, Myxoma virus protein M029 is a dual function immunomodulator that inhibits PKR and also conscripts RHA/DHX9 to promote expanded host tropism and viral replication, PLoS Pathog, 9, e1003465, 10.1371/journal.ppat.1003465 · doi:10.1371/journal.ppat.1003465
  197. Xiao, 2013, RNA helicase is involved in the expression and replication of classical swine fever virus and interacts with untranslated region, Virus Res, 171, 257, 10.1016/j.virusres.2012.11.014 · doi:10.1016/j.virusres.2012.11.014
  198. Rieder, 2009, Identification of RNA helicase A as a new host factor in the replication cycle of foot-and-mouth disease virus, J Virol, 83, 11356, 10.1128/JVI.02677-08 · DOI
  199. Liu, 2011, DHX9 pairs with IPS-1 to sense double-stranded RNA in myeloid dendritic cells, J Immunol, 187, 4501, 10.4049/jimmunol.1101307 · DOI · Paper page
  200. Seya, 2015, Evolution of the DEAD box helicase family in chicken: chickens have no DHX9 ortholog, Microbiol Immunol, 59, 633, 10.1111/1348-0421.12322 · doi:10.1111/1348-0421.12322

200 of 206 shown

Cited by

See all 188

Metadata

Authors
Lee, T., & Pelletier, J.
Venue
Oncotarget
Published
2016-03-28
Volume
7
Issue
27
Pages
42716-42739
ISSN
1949-2553 (ISSN-L)
OpenAlex
W2315984338
Cited by
188
References
9
FWCI
6.62
Type
journal article
Language
en
Open access
diamond

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: The biology of DHX9 and its potential as a therapeutic target. https://app.cochat.ai/papers/10.18632/oncotarget.8446
The paper
Lee, T., & Pelletier, J. (2106). The biology of DHX9 and its potential as a therapeutic target. Oncotarget. https://doi.org/10.18632/oncotarget.8446

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.